RNA–Protein interactions for RNA: ENST00000600310.5

UPF1-209, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 4

Gene UPF1, Length 750 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-209ENST00000600310 IGLV5-39A0A0G2JS06 123 aa12.37□□□□□ -0.43
UPF1-209ENST00000600310 CKS1BP61024 79 aa12.37□□□□□ -0.43
UPF1-209ENST00000600310 COX7B2Q8TF08 81 aa12.37□□□□□ -0.43
UPF1-209ENST00000600310 C6orf48Q9UBA6 75 aa12.37□□□□□ -0.43
UPF1-209ENST00000600310 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP12.37□□□□□ -0.43
UPF1-209ENST00000600310 CXCL5P42830 114 aa12.36□□□□□ -0.43
UPF1-209ENST00000600310 CIRBPQ14011 172 aaKnown RBP12.36□□□□□ -0.43
UPF1-209ENST00000600310 TRBV30A0A0K0K1B3 111 aa12.35□□□□□ -0.43
UPF1-209ENST00000600310 LOC107984640A0A0U1RRK4 108 aa12.35□□□□□ -0.43
UPF1-209ENST00000600310 SYS1-DBNDD2H3BUS1 97 aa12.35□□□□□ -0.43
UPF1-209ENST00000600310 PANO1I0J062 215 aa12.35□□□□□ -0.43
UPF1-209ENST00000600310 HAMPP81172 84 aa12.35□□□□□ -0.43
UPF1-209ENST00000600310 TMEM223A0PJW6 202 aa12.34□□□□□ -0.43
UPF1-209ENST00000600310 CHTF8P0CG12 524 aa12.34□□□□□ -0.43
UPF1-209ENST00000600310 SCXQ7RTU7 201 aa12.34□□□□□ -0.43
UPF1-209ENST00000600310 A0A096LNI7 61 aa12.33□□□□□ -0.44
UPF1-209ENST00000600310 PLNP26678 52 aa12.33□□□□□ -0.44
UPF1-209ENST00000600310 SPACA4Q8TDM5 124 aa12.33□□□□□ -0.44
UPF1-209ENST00000600310 DPM2O94777 84 aa12.32□□□□□ -0.44
UPF1-209ENST00000600310 TLX1NBP0CAT3 122 aa12.32□□□□□ -0.44
UPF1-209ENST00000600310 CIRBP-AS1Q8TBR5 109 aa12.32□□□□□ -0.44
UPF1-209ENST00000600310 PMCHL2Q9BQD1 86 aa12.32□□□□□ -0.44
UPF1-209ENST00000600310 APOBP04114 4563 aaKnown RBP12.31□□□□□ -0.44
UPF1-209ENST00000600310 IGKV2-24A0A0C4DH68 120 aa12.31□□□□□ -0.44
UPF1-209ENST00000600310 S100A6P06703 90 aa12.31□□□□□ -0.44
UPF1-209ENST00000600310 PTTG1IPP53801 180 aa12.31□□□□□ -0.44
UPF1-209ENST00000600310 PET117Q6UWS5 81 aa12.31□□□□□ -0.44
UPF1-209ENST00000600310 LINC00474Q9P2X8 69 aa12.31□□□□□ -0.44
UPF1-209ENST00000600310 DNAH8Q96JB1 4490 aa12.31□□□□□ -0.44
UPF1-209ENST00000600310 IGKCP01834 107 aa12.3□□□□□ -0.44
UPF1-209ENST00000600310 C3orf79P0CE67 100 aa12.3□□□□□ -0.44
UPF1-209ENST00000600310 GAGE2BQ13066 116 aa12.3□□□□□ -0.44
UPF1-209ENST00000600310 HIST3H2BBQ8N257 126 aa12.3□□□□□ -0.44
UPF1-209ENST00000600310 MAJINQ3KP22 176 aa12.29□□□□□ -0.44
UPF1-209ENST00000600310 LINC01545Q5VT33 79 aa12.29□□□□□ -0.44
UPF1-209ENST00000600310 DPH3Q96FX2 82 aa12.29□□□□□ -0.44
UPF1-209ENST00000600310 A0A087WYN8 130 aa12.28□□□□□ -0.44
UPF1-209ENST00000600310 RPL18AQ02543 176 aaKnown RBP12.28□□□□□ -0.44
UPF1-209ENST00000600310 C9orf116Q5BN46 136 aaPredicted RBP12.28□□□□□ -0.44
UPF1-209ENST00000600310 ABCA13Q86UQ4 5058 aa12.28□□□□□ -0.44
UPF1-209ENST00000600310 NDUFC2-KCTD14E9PQ53 114 aa12.27□□□□□ -0.45
UPF1-209ENST00000600310 S100A2P29034 98 aa12.27□□□□□ -0.45
UPF1-209ENST00000600310 KRTDAPP60985 99 aa12.27□□□□□ -0.45
UPF1-209ENST00000600310 Q6ZRP5 223 aa12.27□□□□□ -0.45
UPF1-209ENST00000600310 KRTAP4-5Q9BYR2 181 aa12.27□□□□□ -0.45
UPF1-209ENST00000600310 HSPG2P98160 4391 aa12.27□□□□□ -0.45
UPF1-209ENST00000600310 HIST1H2BLQ99880 126 aa12.26□□□□□ -0.45
UPF1-209ENST00000600310 PLAC8Q9NZF1 115 aa12.26□□□□□ -0.45
UPF1-209ENST00000600310 SFTA2Q6UW10 78 aa12.25□□□□□ -0.45
UPF1-209ENST00000600310 Q8N1X5 172 aa12.25□□□□□ -0.45
UPF1-209ENST00000600310 SMR3BP02814 79 aaPredicted RBP12.24□□□□□ -0.45
UPF1-209ENST00000600310 HERVK_113P61574 105 aa12.24□□□□□ -0.45
UPF1-209ENST00000600310 SNRPEP62304 92 aaKnown RBP12.24□□□□□ -0.45
UPF1-209ENST00000600310 STPG4Q8N801 248 aa12.24□□□□□ -0.45
UPF1-209ENST00000600310 C5orf52A6NGY3 159 aa12.23□□□□□ -0.45
UPF1-209ENST00000600310 GAGE2EQ4V326 116 aa12.23□□□□□ -0.45
UPF1-209ENST00000600310 ZNF625Q96I27 306 aaPredicted RBP12.23□□□□□ -0.45
UPF1-209ENST00000600310 GAGE2DQ9UEU5 116 aa12.23□□□□□ -0.45
UPF1-209ENST00000600310 C20orf202A1L168 122 aa12.21□□□□□ -0.45
UPF1-209ENST00000600310 EPM2AB3EWF7 344 aa12.21□□□□□ -0.45
UPF1-209ENST00000600310 LEPROTO15243 131 aa12.21□□□□□ -0.45
UPF1-209ENST00000600310 PLEKHB2Q96CS7 222 aa12.21□□□□□ -0.45
UPF1-209ENST00000600310 A0A1W2PNN7 141 aa12.2□□□□□ -0.46
UPF1-209ENST00000600310 E9PLD3 99 aa12.18□□□□□ -0.46
UPF1-209ENST00000600310 TSPEAR-AS2P59090 65 aa12.18□□□□□ -0.46
UPF1-209ENST00000600310 LINC00528Q8N1L1 170 aa12.18□□□□□ -0.46
UPF1-209ENST00000600310 NDUFA12Q9UI09 145 aa12.18□□□□□ -0.46
UPF1-209ENST00000600310 ERG28Q9UKR5 140 aa12.18□□□□□ -0.46
UPF1-209ENST00000600310 FAM229AH3BQW9 127 aa12.17□□□□□ -0.46
UPF1-209ENST00000600310 J3QQQ9 107 aa12.17□□□□□ -0.46
UPF1-209ENST00000600310 COX17Q14061 63 aa12.17□□□□□ -0.46
UPF1-209ENST00000600310 C9orf129Q5T035 196 aaKnown RBP12.17□□□□□ -0.46
UPF1-209ENST00000600310 PFN2P35080 140 aa12.16□□□□□ -0.46
UPF1-209ENST00000600310 AKR1D1P51857 326 aa12.16□□□□□ -0.46
UPF1-209ENST00000600310 HERV-K104P63124 156 aa12.16□□□□□ -0.46
UPF1-209ENST00000600310 MYMXA0A1B0GTQ4 84 aa12.15□□□□□ -0.46
UPF1-209ENST00000600310 Q5VSD8 79 aa12.15□□□□□ -0.46
UPF1-209ENST00000600310 XAGE1AQ9HD64 81 aa12.15□□□□□ -0.46
UPF1-209ENST00000600310 LGALS3P17931 250 aaKnown RBP12.14□□□□□ -0.47
UPF1-209ENST00000600310 FAM168BA1KXE4 195 aa12.13□□□□□ -0.47
UPF1-209ENST00000600310 NMUP48645 174 aa12.13□□□□□ -0.47
UPF1-209ENST00000600310 KRTAP7-1Q8IUC3 87 aa12.12□□□□□ -0.47
UPF1-209ENST00000600310 LINC00587B1AMM8 73 aa12.11□□□□□ -0.47
UPF1-209ENST00000600310 ATOH7Q8N100 152 aa12.11□□□□□ -0.47
UPF1-209ENST00000600310 C7orf33Q8WU49 177 aa12.11□□□□□ -0.47
UPF1-209ENST00000600310 PLA2G1BP04054 148 aaKnown RBP12.1□□□□□ -0.47
UPF1-209ENST00000600310 LINC00158P58513 81 aa12.1□□□□□ -0.47
UPF1-209ENST00000600310 MEIG1Q5JSS6 88 aa12.1□□□□□ -0.47
UPF1-209ENST00000600310 FAM19A5Q7Z5A7 132 aaPredicted RBP12.1□□□□□ -0.47
UPF1-209ENST00000600310 SND1-IT1Q9HBX3 110 aa12.1□□□□□ -0.47
UPF1-209ENST00000600310 IGKV2D-26A0A0A0MRZ7 120 aa12.08□□□□□ -0.48
UPF1-209ENST00000600310 SMIM13P0DJ93 91 aa12.08□□□□□ -0.48
UPF1-209ENST00000600310 SERTAD4-AS1Q5TG53 156 aa12.08□□□□□ -0.48
UPF1-209ENST00000600310 PHF5AQ7RTV0 110 aaKnown RBP12.08□□□□□ -0.48
UPF1-209ENST00000600310 PLA2G2DQ9UNK4 145 aa12.08□□□□□ -0.48
UPF1-209ENST00000600310 A0A0U1RRA0 63 aa12.07□□□□□ -0.48
UPF1-209ENST00000600310 RPL37AP61513 92 aaKnown RBP12.07□□□□□ -0.48
UPF1-209ENST00000600310 FAT1Q14517 4588 aa12.07□□□□□ -0.48
UPF1-209ENST00000600310 M0QXV9 152 aa12.06□□□□□ -0.48
UPF1-209ENST00000600310 KRTAP10-4P60372 401 aaPredicted RBP12.06□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 104.6 ms