RNA–Protein interactions for RNA: ENST00000600012.5

UPF1-208, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 5

Gene UPF1, Length 501 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-208ENST00000600012 A0A087WZ39 114 aa8.37□□□□□ -1.07
UPF1-208ENST00000600012 TSPEAR-AS2P59090 65 aa8.37□□□□□ -1.07
UPF1-208ENST00000600012 TTTY13Q9BZ97 58 aa8.37□□□□□ -1.07
UPF1-208ENST00000600012 IGHV1-58A0A0C4DH39 117 aa8.36□□□□□ -1.07
UPF1-208ENST00000600012 COX7A2LO14548 114 aa8.36□□□□□ -1.07
UPF1-208ENST00000600012 C14orf144Q96I85 54 aa8.36□□□□□ -1.07
UPF1-208ENST00000600012 FAT1Q14517 4588 aa8.36□□□□□ -1.07
UPF1-208ENST00000600012 IGLV5-39A0A0G2JS06 123 aa8.35□□□□□ -1.07
UPF1-208ENST00000600012 FAM229AH3BQW9 127 aa8.35□□□□□ -1.07
UPF1-208ENST00000600012 LEPROTO15243 131 aa8.35□□□□□ -1.07
UPF1-208ENST00000600012 PCP2Q8IVA1 136 aa8.35□□□□□ -1.07
UPF1-208ENST00000600012 IGLV5-52A0A0A0MRZ9 124 aa8.34□□□□□ -1.07
UPF1-208ENST00000600012 J3QQQ9 107 aa8.34□□□□□ -1.07
UPF1-208ENST00000600012 PSCAO43653 123 aa8.34□□□□□ -1.07
UPF1-208ENST00000600012 SMR3BP02814 79 aaPredicted RBP8.34□□□□□ -1.07
UPF1-208ENST00000600012 MALP21145 153 aa8.34□□□□□ -1.07
UPF1-208ENST00000600012 NTN5Q8WTR8 489 aaPredicted RBP8.34□□□□□ -1.07
UPF1-208ENST00000600012 PLEKHB2Q96CS7 222 aa8.34□□□□□ -1.07
UPF1-208ENST00000600012 TOMM7Q9P0U1 55 aa8.34□□□□□ -1.07
UPF1-208ENST00000600012 VPS13BQ7Z7G8 4022 aa8.33□□□□□ -1.08
UPF1-208ENST00000600012 COX8AP10176 69 aa8.33□□□□□ -1.08
UPF1-208ENST00000600012 LGALS3P17931 250 aaKnown RBP8.33□□□□□ -1.08
UPF1-208ENST00000600012 LINC01561Q8N1V8 128 aa8.33□□□□□ -1.08
UPF1-208ENST00000600012 ORAOV1Q8WV07 137 aa8.33□□□□□ -1.08
UPF1-208ENST00000600012 RMI2Q96E14 147 aa8.33□□□□□ -1.08
UPF1-208ENST00000600012 LRCOL1A6NCL2 159 aa8.32□□□□□ -1.08
UPF1-208ENST00000600012 COX7B2Q8TF08 81 aa8.32□□□□□ -1.08
UPF1-208ENST00000600012 MYCBP2O75592 4640 aa8.31□□□□□ -1.08
UPF1-208ENST00000600012 ZNF815PA8K554 130 aa8.31□□□□□ -1.08
UPF1-208ENST00000600012 TSTD3H0UI37 97 aa8.31□□□□□ -1.08
UPF1-208ENST00000600012 HAMPP81172 84 aa8.31□□□□□ -1.08
UPF1-208ENST00000600012 SLC25A34Q6PIV7 304 aa8.31□□□□□ -1.08
UPF1-208ENST00000600012 APOMO95445 188 aa8.3□□□□□ -1.08
UPF1-208ENST00000600012 SPAG11BQ08648 103 aa8.3□□□□□ -1.08
UPF1-208ENST00000600012 BOD1L2Q8IYS8 172 aa8.3□□□□□ -1.08
UPF1-208ENST00000600012 C15orf56Q8N910 161 aa8.3□□□□□ -1.08
UPF1-208ENST00000600012 UQCR10Q9UDW1 63 aa8.3□□□□□ -1.08
UPF1-208ENST00000600012 SRRM2Q9UQ35 2752 aaKnown RBP8.3□□□□□ -1.08
UPF1-208ENST00000600012 MYMXA0A1B0GTQ4 84 aa8.29□□□□□ -1.08
UPF1-208ENST00000600012 HIGD2BQ4VC39 106 aa8.29□□□□□ -1.08
UPF1-208ENST00000600012 Q8IZM0 81 aa8.29□□□□□ -1.08
UPF1-208ENST00000600012 Q8N814 137 aa8.29□□□□□ -1.08
UPF1-208ENST00000600012 LINC00526Q96FQ7 95 aa8.29□□□□□ -1.08
UPF1-208ENST00000600012 TM2D2Q9BX73 214 aa8.29□□□□□ -1.08
UPF1-208ENST00000600012 NDUFA12Q9UI09 145 aa8.29□□□□□ -1.08
UPF1-208ENST00000600012 PCP4L1A6NKN8 68 aa8.28□□□□□ -1.08
UPF1-208ENST00000600012 LECT2O14960 151 aa8.28□□□□□ -1.08
UPF1-208ENST00000600012 PRSS2P07478 247 aa8.28□□□□□ -1.08
UPF1-208ENST00000600012 KIAA0087Q14695 138 aa8.28□□□□□ -1.08
UPF1-208ENST00000600012 CFAP161Q6P656 301 aa8.28□□□□□ -1.08
UPF1-208ENST00000600012 MIEN1Q9BRT3 115 aa8.28□□□□□ -1.08
UPF1-208ENST00000600012 USP17L23D6RBM5 183 aa8.27□□□□□ -1.09
UPF1-208ENST00000600012 J3QL48 77 aa8.27□□□□□ -1.09
UPF1-208ENST00000600012 NDUFA1O15239 70 aa8.27□□□□□ -1.09
UPF1-208ENST00000600012 DLEU1O43261 78 aa8.27□□□□□ -1.09
UPF1-208ENST00000600012 C2orf91Q6ZV80 131 aa8.27□□□□□ -1.09
UPF1-208ENST00000600012 COX11Q9Y6N1 276 aa8.27□□□□□ -1.09
UPF1-208ENST00000600012 HNRNPA3P51991 378 aaKnown RBP8.26□□□□□ -1.09
UPF1-208ENST00000600012 WFDC2Q14508 124 aa8.26□□□□□ -1.09
UPF1-208ENST00000600012 C6orf226Q5I0X4 101 aa8.26□□□□□ -1.09
UPF1-208ENST00000600012 C2orf82Q6UX34 121 aa8.26□□□□□ -1.09
UPF1-208ENST00000600012 ZNF625Q96I27 306 aaPredicted RBP8.26□□□□□ -1.09
UPF1-208ENST00000600012 FAM30AQ9NZY2 134 aa8.26□□□□□ -1.09
UPF1-208ENST00000600012 A0A0J9YXY3 114 aa8.25□□□□□ -1.09
UPF1-208ENST00000600012 SCGB1D4Q6XE38 83 aa8.25□□□□□ -1.09
UPF1-208ENST00000600012 GVQW2A0A096LPI5 108 aaPredicted RBP8.24□□□□□ -1.09
UPF1-208ENST00000600012 ZNF561-AS1K7EIQ3 104 aa8.24□□□□□ -1.09
UPF1-208ENST00000600012 PLA2G1BP04054 148 aaKnown RBP8.24□□□□□ -1.09
UPF1-208ENST00000600012 DDTP30046 118 aa8.24□□□□□ -1.09
UPF1-208ENST00000600012 CKS1BP61024 79 aa8.24□□□□□ -1.09
UPF1-208ENST00000600012 CXCL5P42830 114 aa8.23□□□□□ -1.09
UPF1-208ENST00000600012 UNQ6190/PRO20217Q6UXQ8 127 aa8.23□□□□□ -1.09
UPF1-208ENST00000600012 Q6ZSA8 131 aa8.23□□□□□ -1.09
UPF1-208ENST00000600012 HERV-K104P63124 156 aa8.22□□□□□ -1.09
UPF1-208ENST00000600012 MEIG1Q5JSS6 88 aa8.22□□□□□ -1.09
UPF1-208ENST00000600012 C10orf25Q5T742 122 aa8.22□□□□□ -1.09
UPF1-208ENST00000600012 CAMK2N2Q96S95 79 aa8.22□□□□□ -1.09
UPF1-208ENST00000600012 A0A0U1RRA0 63 aa8.21□□□□□ -1.1
UPF1-208ENST00000600012 LINC00528Q8N1L1 170 aa8.21□□□□□ -1.1
UPF1-208ENST00000600012 HIGD1BQ9P298 99 aa8.21□□□□□ -1.1
UPF1-208ENST00000600012 KRTAP29-1A8MX34 341 aaPredicted RBP8.2□□□□□ -1.1
UPF1-208ENST00000600012 SMIM13P0DJ93 91 aa8.2□□□□□ -1.1
UPF1-208ENST00000600012 CTAG1AP78358 180 aa8.2□□□□□ -1.1
UPF1-208ENST00000600012 SFTA2Q6UW10 78 aa8.2□□□□□ -1.1
UPF1-208ENST00000600012 Q6ZRU5 148 aa8.2□□□□□ -1.1
UPF1-208ENST00000600012 C2orf48Q96LS8 159 aa8.2□□□□□ -1.1
UPF1-208ENST00000600012 LITAFQ99732 161 aa8.2□□□□□ -1.1
UPF1-208ENST00000600012 C6orf48Q9UBA6 75 aa8.2□□□□□ -1.1
UPF1-208ENST00000600012 C9orf116Q5BN46 136 aaPredicted RBP8.19□□□□□ -1.1
UPF1-208ENST00000600012 DAND5Q8N907 189 aa8.19□□□□□ -1.1
UPF1-208ENST00000600012 ERG28Q9UKR5 140 aa8.19□□□□□ -1.1
UPF1-208ENST00000600012 DNAH8Q96JB1 4490 aa8.19□□□□□ -1.1
UPF1-208ENST00000600012 IGLV2-33A0A075B6J2 118 aaPredicted RBP8.18□□□□□ -1.1
UPF1-208ENST00000600012 TMEM238C9JI98 176 aa8.18□□□□□ -1.1
UPF1-208ENST00000600012 TIMM17BO60830 172 aa8.18□□□□□ -1.1
UPF1-208ENST00000600012 SLPIP03973 132 aa8.18□□□□□ -1.1
UPF1-208ENST00000600012 PFN2P35080 140 aa8.18□□□□□ -1.1
UPF1-208ENST00000600012 SYCNQ0VAF6 134 aa8.18□□□□□ -1.1
UPF1-208ENST00000600012 ADAMTSL4-AS1Q5T5F5 129 aa8.18□□□□□ -1.1
UPF1-208ENST00000600012 LINC00587B1AMM8 73 aa8.17□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 64.8 ms