RNA–Protein interactions for RNA: ENST00000597172.5

TRIM28-208, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 577 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-208ENST00000597172 SMR3BP02814 79 aaPredicted RBP6.2□□□□□ -1.42
TRIM28-208ENST00000597172 IGHV3-64A0A075B6Q5 118 aa6.19□□□□□ -1.42
TRIM28-208ENST00000597172 IGLV5-39A0A0G2JS06 123 aa6.19□□□□□ -1.42
TRIM28-208ENST00000597172 LRCOL1A6NCL2 159 aa6.19□□□□□ -1.42
TRIM28-208ENST00000597172 H3BRM9 83 aa6.19□□□□□ -1.42
TRIM28-208ENST00000597172 WFDC2Q14508 124 aa6.19□□□□□ -1.42
TRIM28-208ENST00000597172 KIAA0087Q14695 138 aa6.19□□□□□ -1.42
TRIM28-208ENST00000597172 ANKRD39Q53RE8 183 aa6.19□□□□□ -1.42
TRIM28-208ENST00000597172 C15orf56Q8N910 161 aa6.19□□□□□ -1.42
TRIM28-208ENST00000597172 IGHV1-58A0A0C4DH39 117 aa6.18□□□□□ -1.42
TRIM28-208ENST00000597172 MALP21145 153 aa6.18□□□□□ -1.42
TRIM28-208ENST00000597172 FAT3Q8TDW7 4589 aa6.18□□□□□ -1.42
TRIM28-208ENST00000597172 IGKV2D-26A0A0A0MRZ7 120 aa6.17□□□□□ -1.42
TRIM28-208ENST00000597172 USP17L23D6RBM5 183 aa6.17□□□□□ -1.42
TRIM28-208ENST00000597172 E9PLD3 99 aa6.17□□□□□ -1.42
TRIM28-208ENST00000597172 LECT2O14960 151 aa6.17□□□□□ -1.42
TRIM28-208ENST00000597172 LEPROTO15243 131 aa6.17□□□□□ -1.42
TRIM28-208ENST00000597172 PSCAO43653 123 aa6.17□□□□□ -1.42
TRIM28-208ENST00000597172 LINC00526Q96FQ7 95 aa6.17□□□□□ -1.42
TRIM28-208ENST00000597172 APOMO95445 188 aa6.16□□□□□ -1.42
TRIM28-208ENST00000597172 SLPIP03973 132 aa6.16□□□□□ -1.42
TRIM28-208ENST00000597172 TSPEAR-AS2P59090 65 aa6.16□□□□□ -1.42
TRIM28-208ENST00000597172 HIGD2BQ4VC39 106 aa6.16□□□□□ -1.42
TRIM28-208ENST00000597172 CFAP161Q6P656 301 aa6.16□□□□□ -1.42
TRIM28-208ENST00000597172 ORAOV1Q8WV07 137 aa6.16□□□□□ -1.42
TRIM28-208ENST00000597172 GVQW2A0A096LPI5 108 aaPredicted RBP6.15□□□□□ -1.42
TRIM28-208ENST00000597172 HERVK_113P61574 105 aa6.15□□□□□ -1.42
TRIM28-208ENST00000597172 Q8IZM0 81 aa6.15□□□□□ -1.42
TRIM28-208ENST00000597172 COX7B2Q8TF08 81 aa6.15□□□□□ -1.42
TRIM28-208ENST00000597172 NTN5Q8WTR8 489 aaPredicted RBP6.15□□□□□ -1.42
TRIM28-208ENST00000597172 TOMM7Q9P0U1 55 aa6.15□□□□□ -1.42
TRIM28-208ENST00000597172 FAT4Q6V0I7 4981 aa6.14□□□□□ -1.43
TRIM28-208ENST00000597172 A0A087WTM6 91 aa6.14□□□□□ -1.43
TRIM28-208ENST00000597172 J3QQQ9 107 aa6.14□□□□□ -1.43
TRIM28-208ENST00000597172 SMIM6P0DI80 62 aa6.14□□□□□ -1.43
TRIM28-208ENST00000597172 SPAG11BQ08648 103 aa6.14□□□□□ -1.43
TRIM28-208ENST00000597172 C6orf226Q5I0X4 101 aa6.14□□□□□ -1.43
TRIM28-208ENST00000597172 C2orf82Q6UX34 121 aa6.14□□□□□ -1.43
TRIM28-208ENST00000597172 PLEKHB2Q96CS7 222 aa6.14□□□□□ -1.43
TRIM28-208ENST00000597172 VAMP8Q9BV40 100 aa6.14□□□□□ -1.43
TRIM28-208ENST00000597172 TTTY13Q9BZ97 58 aa6.14□□□□□ -1.43
TRIM28-208ENST00000597172 PAM16Q9Y3D7 125 aa6.14□□□□□ -1.43
TRIM28-208ENST00000597172 HSBP1L1C9JCN9 74 aa6.13□□□□□ -1.43
TRIM28-208ENST00000597172 ZNF561-AS1K7EIQ3 104 aa6.13□□□□□ -1.43
TRIM28-208ENST00000597172 SPATA45Q537H7 98 aa6.13□□□□□ -1.43
TRIM28-208ENST00000597172 C10orf25Q5T742 122 aa6.13□□□□□ -1.43
TRIM28-208ENST00000597172 PCP2Q8IVA1 136 aa6.13□□□□□ -1.43
TRIM28-208ENST00000597172 ZNF625Q96I27 306 aaPredicted RBP6.13□□□□□ -1.43
TRIM28-208ENST00000597172 PRSS2P07478 247 aa6.12□□□□□ -1.43
TRIM28-208ENST00000597172 NMUP48645 174 aa6.12□□□□□ -1.43
TRIM28-208ENST00000597172 UNQ6190/PRO20217Q6UXQ8 127 aa6.12□□□□□ -1.43
TRIM28-208ENST00000597172 LINC00518Q8N0U6 118 aa6.12□□□□□ -1.43
TRIM28-208ENST00000597172 Q8N814 137 aa6.12□□□□□ -1.43
TRIM28-208ENST00000597172 C2orf48Q96LS8 159 aa6.12□□□□□ -1.43
TRIM28-208ENST00000597172 C12orf57Q99622 126 aa6.12□□□□□ -1.43
TRIM28-208ENST00000597172 NDUFA12Q9UI09 145 aa6.12□□□□□ -1.43
TRIM28-208ENST00000597172 NDUFA1O15239 70 aa6.11□□□□□ -1.43
TRIM28-208ENST00000597172 LGALS3P17931 250 aaKnown RBP6.11□□□□□ -1.43
TRIM28-208ENST00000597172 C14orf177Q52M58 125 aa6.11□□□□□ -1.43
TRIM28-208ENST00000597172 C14orf144Q96I85 54 aa6.11□□□□□ -1.43
TRIM28-208ENST00000597172 IGLV2-33A0A075B6J2 118 aaPredicted RBP6.1□□□□□ -1.43
TRIM28-208ENST00000597172 F8WDY8 70 aa6.1□□□□□ -1.43
TRIM28-208ENST00000597172 COX8AP10176 69 aa6.1□□□□□ -1.43
TRIM28-208ENST00000597172 CKS1BP61024 79 aa6.1□□□□□ -1.43
TRIM28-208ENST00000597172 S100A12P80511 92 aa6.1□□□□□ -1.43
TRIM28-208ENST00000597172 SYCNQ0VAF6 134 aa6.1□□□□□ -1.43
TRIM28-208ENST00000597172 C9orf116Q5BN46 136 aaPredicted RBP6.1□□□□□ -1.43
TRIM28-208ENST00000597172 Q6ZRU5 148 aa6.1□□□□□ -1.43
TRIM28-208ENST00000597172 BOD1L2Q8IYS8 172 aa6.1□□□□□ -1.43
TRIM28-208ENST00000597172 CAMK2N2Q96S95 79 aa6.1□□□□□ -1.43
TRIM28-208ENST00000597172 PGPEP1Q9NXJ5 209 aa6.1□□□□□ -1.43
TRIM28-208ENST00000597172 TP73-AS1Q9UF72 201 aa6.1□□□□□ -1.43
TRIM28-208ENST00000597172 MYMXA0A1B0GTQ4 84 aa6.09□□□□□ -1.43
TRIM28-208ENST00000597172 ZNF815PA8K554 130 aa6.09□□□□□ -1.43
TRIM28-208ENST00000597172 FUSP35637 526 aaKnown RBP eCLIP6.09□□□□□ -1.43
TRIM28-208ENST00000597172 CXCL5P42830 114 aa6.09□□□□□ -1.43
TRIM28-208ENST00000597172 CNBPP62633 177 aaKnown RBP6.09□□□□□ -1.43
TRIM28-208ENST00000597172 C6orf48Q9UBA6 75 aa6.09□□□□□ -1.43
TRIM28-208ENST00000597172 A0A0J9YXY3 114 aa6.08□□□□□ -1.44
TRIM28-208ENST00000597172 DLEU1O43261 78 aa6.08□□□□□ -1.44
TRIM28-208ENST00000597172 RNF151Q2KHN1 245 aa6.08□□□□□ -1.44
TRIM28-208ENST00000597172 TRBV30A0A0K0K1B3 111 aa6.07□□□□□ -1.44
TRIM28-208ENST00000597172 OXTP01178 125 aa6.07□□□□□ -1.44
TRIM28-208ENST00000597172 KRTAP10-1P60331 282 aa6.07□□□□□ -1.44
TRIM28-208ENST00000597172 HERV-K104P63124 156 aa6.07□□□□□ -1.44
TRIM28-208ENST00000597172 CARD19Q96LW7 228 aa6.07□□□□□ -1.44
TRIM28-208ENST00000597172 PRO1933Q9H354 126 aa6.07□□□□□ -1.44
TRIM28-208ENST00000597172 MUC2Q02817 5179 aa6.06□□□□□ -1.44
TRIM28-208ENST00000597172 EREGO14944 169 aa6.06□□□□□ -1.44
TRIM28-208ENST00000597172 ADAMTSL4-AS1Q5T5F5 129 aa6.06□□□□□ -1.44
TRIM28-208ENST00000597172 SLC25A34Q6PIV7 304 aa6.06□□□□□ -1.44
TRIM28-208ENST00000597172 SFTA2Q6UW10 78 aa6.06□□□□□ -1.44
TRIM28-208ENST00000597172 C9orf163Q8N9P6 203 aa6.06□□□□□ -1.44
TRIM28-208ENST00000597172 LITAFQ99732 161 aa6.06□□□□□ -1.44
TRIM28-208ENST00000597172 ERG28Q9UKR5 140 aa6.06□□□□□ -1.44
TRIM28-208ENST00000597172 DNAH8Q96JB1 4490 aa6.05□□□□□ -1.44
TRIM28-208ENST00000597172 TNXBP22105 4242 aa6.05□□□□□ -1.44
TRIM28-208ENST00000597172 A0A0U1RRA0 63 aa6.05□□□□□ -1.44
TRIM28-208ENST00000597172 SMIM13P0DJ93 91 aa6.05□□□□□ -1.44
TRIM28-208ENST00000597172 PFN2P35080 140 aa6.05□□□□□ -1.44
Retrieved 100 of 20,778 RNA–protein pairs in 30.9 ms