RNA–Protein interactions for RNA: ENST00000596672.5

LIG1-213, Transcript of DNA ligase 1, humanhuman

TSL 3

Gene LIG1, Length 792 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-213ENST00000596672 ATOH7Q8N100 152 aa6.6□□□□□ -1.35
LIG1-213ENST00000596672 STPG4Q8N801 248 aa6.6□□□□□ -1.35
LIG1-213ENST00000596672 PLAC8Q9NZF1 115 aa6.6□□□□□ -1.35
LIG1-213ENST00000596672 IGHV3-64A0A075B6Q5 118 aa6.59□□□□□ -1.35
LIG1-213ENST00000596672 GVQW2A0A096LPI5 108 aaPredicted RBP6.59□□□□□ -1.35
LIG1-213ENST00000596672 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP6.59□□□□□ -1.35
LIG1-213ENST00000596672 H7C423 109 aa6.59□□□□□ -1.35
LIG1-213ENST00000596672 HINT1P49773 126 aaPredicted RBP6.59□□□□□ -1.35
LIG1-213ENST00000596672 ODF1Q14990 250 aa6.59□□□□□ -1.35
LIG1-213ENST00000596672 OR5A1Q8NGJ0 315 aa6.59□□□□□ -1.35
LIG1-213ENST00000596672 CDC42SE2Q9NRR3 84 aa6.59□□□□□ -1.35
LIG1-213ENST00000596672 A0A096LNI7 61 aa6.58□□□□□ -1.36
LIG1-213ENST00000596672 CCL25O15444 150 aa6.58□□□□□ -1.36
LIG1-213ENST00000596672 OXTP01178 125 aa6.58□□□□□ -1.36
LIG1-213ENST00000596672 XCL1P47992 114 aa6.58□□□□□ -1.36
LIG1-213ENST00000596672 PTTG1IPP53801 180 aa6.58□□□□□ -1.36
LIG1-213ENST00000596672 UBE2V1Q13404 147 aa6.58□□□□□ -1.36
LIG1-213ENST00000596672 RNASE13Q5GAN3 156 aaKnown RBP6.58□□□□□ -1.36
LIG1-213ENST00000596672 AMMECR1LQ6DCA0 310 aa6.58□□□□□ -1.36
LIG1-213ENST00000596672 ERASQ7Z444 233 aa6.58□□□□□ -1.36
LIG1-213ENST00000596672 OPRPNQ99935 248 aaPredicted RBP6.58□□□□□ -1.36
LIG1-213ENST00000596672 IGIPA6NJ69 53 aa6.57□□□□□ -1.36
LIG1-213ENST00000596672 NPSP0C0P6 89 aa6.57□□□□□ -1.36
LIG1-213ENST00000596672 COX8AP10176 69 aa6.57□□□□□ -1.36
LIG1-213ENST00000596672 SEC11AP67812 179 aa6.57□□□□□ -1.36
LIG1-213ENST00000596672 ZC2HC1BQ5TFG8 222 aa6.57□□□□□ -1.36
LIG1-213ENST00000596672 TMEM141Q96I45 108 aa6.57□□□□□ -1.36
LIG1-213ENST00000596672 LINC01549A6NIU2 74 aa6.56□□□□□ -1.36
LIG1-213ENST00000596672 MAJINQ3KP22 176 aa6.56□□□□□ -1.36
LIG1-213ENST00000596672 UBE2D4Q9Y2X8 147 aa6.56□□□□□ -1.36
LIG1-213ENST00000596672 RNF213Q63HN8 5207 aa6.55□□□□□ -1.36
LIG1-213ENST00000596672 IGKV2-24A0A0C4DH68 120 aa6.55□□□□□ -1.36
LIG1-213ENST00000596672 BVES-AS1Q5T3Y7 98 aa6.55□□□□□ -1.36
LIG1-213ENST00000596672 TIMM17AQ99595 171 aa6.55□□□□□ -1.36
LIG1-213ENST00000596672 IGLV4-3A0A075B6K6 122 aa6.54□□□□□ -1.36
LIG1-213ENST00000596672 TRAV16A0A0A6YYK6 109 aaPredicted RBP6.54□□□□□ -1.36
LIG1-213ENST00000596672 TRAV12-1A0A0B4J245 112 aa6.54□□□□□ -1.36
LIG1-213ENST00000596672 A6NDN8 102 aa6.54□□□□□ -1.36
LIG1-213ENST00000596672 VAMP3Q15836 100 aa6.54□□□□□ -1.36
LIG1-213ENST00000596672 CFAP161Q6P656 301 aa6.54□□□□□ -1.36
LIG1-213ENST00000596672 Q6ZUT4 128 aa6.54□□□□□ -1.36
LIG1-213ENST00000596672 CST9LQ9H4G1 147 aa6.54□□□□□ -1.36
LIG1-213ENST00000596672 MRPL35Q9NZE8 188 aaKnown RBP6.54□□□□□ -1.36
LIG1-213ENST00000596672 CHTOPQ9Y3Y2 248 aaKnown RBP6.54□□□□□ -1.36
LIG1-213ENST00000596672 PYGO1Q9Y3Y4 419 aa6.54□□□□□ -1.36
LIG1-213ENST00000596672 PMVKQ15126 192 aa6.53□□□□□ -1.36
LIG1-213ENST00000596672 CD164L2Q6UWJ8 174 aa6.53□□□□□ -1.36
LIG1-213ENST00000596672 VCX2Q9H322 139 aa6.53□□□□□ -1.36
LIG1-213ENST00000596672 SPANXA1Q9NS26 97 aa6.53□□□□□ -1.36
LIG1-213ENST00000596672 IGHV1-58A0A0C4DH39 117 aa6.52□□□□□ -1.37
LIG1-213ENST00000596672 A0A1W2PNN7 141 aa6.52□□□□□ -1.37
LIG1-213ENST00000596672 DPM2O94777 84 aa6.52□□□□□ -1.37
LIG1-213ENST00000596672 IGKCP01834 107 aa6.52□□□□□ -1.37
LIG1-213ENST00000596672 HSD52Q0P140 79 aa6.52□□□□□ -1.37
LIG1-213ENST00000596672 Q6ZRU5 148 aa6.52□□□□□ -1.37
LIG1-213ENST00000596672 DPH3Q96FX2 82 aa6.52□□□□□ -1.37
LIG1-213ENST00000596672 TMEM101Q96IK0 257 aa6.52□□□□□ -1.37
LIG1-213ENST00000596672 TIMM21Q9BVV7 248 aa6.52□□□□□ -1.37
LIG1-213ENST00000596672 IGLV4-69A0A075B6H9 119 aa6.51□□□□□ -1.37
LIG1-213ENST00000596672 TAX1BP3O14907 124 aa6.51□□□□□ -1.37
LIG1-213ENST00000596672 PRR3P79522 188 aaKnown RBP6.51□□□□□ -1.37
LIG1-213ENST00000596672 PAPPA-AS1Q5QFB9 102 aa6.51□□□□□ -1.37
LIG1-213ENST00000596672 BOD1L2Q8IYS8 172 aa6.51□□□□□ -1.37
LIG1-213ENST00000596672 CSDC2Q9Y534 153 aaKnown RBP6.51□□□□□ -1.37
LIG1-213ENST00000596672 TRAV13-1A0A0B4J241 112 aa6.5□□□□□ -1.37
LIG1-213ENST00000596672 A0A0J9YXV3 536 aa6.5□□□□□ -1.37
LIG1-213ENST00000596672 F8VRH5 84 aa6.5□□□□□ -1.37
LIG1-213ENST00000596672 H3BRM9 83 aa6.5□□□□□ -1.37
LIG1-213ENST00000596672 MRPS36P82909 103 aaKnown RBP6.5□□□□□ -1.37
LIG1-213ENST00000596672 SYCNQ0VAF6 134 aa6.5□□□□□ -1.37
LIG1-213ENST00000596672 SMAGPQ0VAQ4 97 aa6.5□□□□□ -1.37
LIG1-213ENST00000596672 SS18Q15532 418 aa6.5□□□□□ -1.37
LIG1-213ENST00000596672 GTF2H5Q6ZYL4 71 aa6.5□□□□□ -1.37
LIG1-213ENST00000596672 C5orf38Q86SI9 138 aa6.5□□□□□ -1.37
LIG1-213ENST00000596672 CARD19Q96LW7 228 aa6.5□□□□□ -1.37
LIG1-213ENST00000596672 AMELXQ99217 191 aa6.5□□□□□ -1.37
LIG1-213ENST00000596672 PLNP26678 52 aa6.49□□□□□ -1.37
LIG1-213ENST00000596672 SRSF9Q13242 221 aaKnown RBP eCLIP6.49□□□□□ -1.37
LIG1-213ENST00000596672 ANKRD39Q53RE8 183 aa6.49□□□□□ -1.37
LIG1-213ENST00000596672 C10orf25Q5T742 122 aa6.49□□□□□ -1.37
LIG1-213ENST00000596672 SERTAD4-AS1Q5TG53 156 aa6.49□□□□□ -1.37
LIG1-213ENST00000596672 C2orf91Q6ZV80 131 aa6.49□□□□□ -1.37
LIG1-213ENST00000596672 KRTAP11-1Q8IUC1 163 aa6.49□□□□□ -1.37
LIG1-213ENST00000596672 HIGD1BQ9P298 99 aa6.49□□□□□ -1.37
LIG1-213ENST00000596672 IGHV3OR16-9A0A0B4J2B5 98 aa6.48□□□□□ -1.37
LIG1-213ENST00000596672 C11orf86A6NJI1 115 aa6.48□□□□□ -1.37
LIG1-213ENST00000596672 KRTAP7-1Q8IUC3 87 aa6.48□□□□□ -1.37
LIG1-213ENST00000596672 COX7A2LO14548 114 aa6.47□□□□□ -1.37
LIG1-213ENST00000596672 PLA2G2DQ9UNK4 145 aa6.47□□□□□ -1.37
LIG1-213ENST00000596672 LPAP08519 4548 aa6.46□□□□□ -1.37
LIG1-213ENST00000596672 GAGE10A6NGK3 116 aa6.46□□□□□ -1.38
LIG1-213ENST00000596672 C9orf118A6NHY6 69 aa6.46□□□□□ -1.38
LIG1-213ENST00000596672 K7ERU9 68 aa6.46□□□□□ -1.38
LIG1-213ENST00000596672 UBE2D1P51668 147 aa6.46□□□□□ -1.38
LIG1-213ENST00000596672 KRTAP10-8P60410 259 aa6.46□□□□□ -1.38
LIG1-213ENST00000596672 GAGE2BQ13066 116 aa6.46□□□□□ -1.38
LIG1-213ENST00000596672 TAL2Q16559 108 aa6.46□□□□□ -1.38
LIG1-213ENST00000596672 TMEM170BQ5T4T1 132 aa6.46□□□□□ -1.38
LIG1-213ENST00000596672 LINC01600Q96MT4 127 aa6.46□□□□□ -1.38
LIG1-213ENST00000596672 ZNF561-AS1K7EIQ3 104 aa6.45□□□□□ -1.38
Retrieved 100 of 20,778 RNA–protein pairs in 69.6 ms