RNA–Protein interactions for RNA: ENST00000596436.5

USHBP1-206, Transcript of USH1 protein network component harmonin binding protein 1, humanhuman

TSL 3

Gene USHBP1, Length 487 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USHBP1-206ENST00000596436 MAJINQ3KP22 176 aa10.02□□□□□ -0.81
USHBP1-206ENST00000596436 C2orf82Q6UX34 121 aa10.02□□□□□ -0.81
USHBP1-206ENST00000596436 LINC00469Q8N7U9 141 aa10.02□□□□□ -0.81
USHBP1-206ENST00000596436 MRPL35Q9NZE8 188 aaKnown RBP10.02□□□□□ -0.81
USHBP1-206ENST00000596436 C6orf48Q9UBA6 75 aa10.02□□□□□ -0.81
USHBP1-206ENST00000596436 LOC107984640A0A0U1RRK4 108 aa10.01□□□□□ -0.81
USHBP1-206ENST00000596436 SMIM1B2RUZ4 78 aa10.01□□□□□ -0.81
USHBP1-206ENST00000596436 F8WDY8 70 aa10.01□□□□□ -0.81
USHBP1-206ENST00000596436 SERF1AO75920 110 aa10.01□□□□□ -0.81
USHBP1-206ENST00000596436 ATP5LO75964 103 aa10.01□□□□□ -0.81
USHBP1-206ENST00000596436 NDUFA6P56556 154 aa10.01□□□□□ -0.81
USHBP1-206ENST00000596436 RNF151Q2KHN1 245 aa10.01□□□□□ -0.81
USHBP1-206ENST00000596436 FAM19A2Q8N3H0 131 aa10.01□□□□□ -0.81
USHBP1-206ENST00000596436 HSBP1O75506 76 aa10□□□□□ -0.81
USHBP1-206ENST00000596436 IGLC3P0DOY3 106 aa10□□□□□ -0.81
USHBP1-206ENST00000596436 PTTG1IPP53801 180 aa10□□□□□ -0.81
USHBP1-206ENST00000596436 PLAC8Q9NZF1 115 aa10□□□□□ -0.81
USHBP1-206ENST00000596436 NUPR1O60356 82 aa9.99□□□□□ -0.81
USHBP1-206ENST00000596436 Q8IZM0 81 aa9.99□□□□□ -0.81
USHBP1-206ENST00000596436 DPH3Q96FX2 82 aa9.99□□□□□ -0.81
USHBP1-206ENST00000596436 PACRGQ96M98 296 aaPredicted RBP9.99□□□□□ -0.81
USHBP1-206ENST00000596436 TOMM7Q9P0U1 55 aa9.99□□□□□ -0.81
USHBP1-206ENST00000596436 PKIGQ9Y2B9 76 aa9.99□□□□□ -0.81
USHBP1-206ENST00000596436 GAGE2BQ13066 116 aa9.98□□□□□ -0.81
USHBP1-206ENST00000596436 STPG4Q8N801 248 aa9.98□□□□□ -0.81
USHBP1-206ENST00000596436 PRSS2P07478 247 aa9.97□□□□□ -0.81
USHBP1-206ENST00000596436 SPINK8P0C7L1 97 aa9.97□□□□□ -0.81
USHBP1-206ENST00000596436 ZNF22P17026 224 aaPredicted RBP9.97□□□□□ -0.81
USHBP1-206ENST00000596436 RPL18AQ02543 176 aaKnown RBP9.97□□□□□ -0.81
USHBP1-206ENST00000596436 IFI27L1Q96BM0 104 aa9.97□□□□□ -0.81
USHBP1-206ENST00000596436 C11orf86A6NJI1 115 aa9.96□□□□□ -0.82
USHBP1-206ENST00000596436 LINC00474Q9P2X8 69 aa9.96□□□□□ -0.82
USHBP1-206ENST00000596436 HIST1H2BKO60814 126 aa9.95□□□□□ -0.82
USHBP1-206ENST00000596436 HIST1H2BJP06899 126 aa9.95□□□□□ -0.82
USHBP1-206ENST00000596436 TLX1NBP0CAT3 122 aa9.95□□□□□ -0.82
USHBP1-206ENST00000596436 HIST1H2BOP23527 126 aa9.95□□□□□ -0.82
USHBP1-206ENST00000596436 HIST1H2BBP33778 126 aa9.95□□□□□ -0.82
USHBP1-206ENST00000596436 HIST1H2BDP58876 126 aa9.95□□□□□ -0.82
USHBP1-206ENST00000596436 HIST1H2BCP62807 126 aa9.95□□□□□ -0.82
USHBP1-206ENST00000596436 HIST2H2BEQ16778 126 aa9.95□□□□□ -0.82
USHBP1-206ENST00000596436 C9orf116Q5BN46 136 aaPredicted RBP9.95□□□□□ -0.82
USHBP1-206ENST00000596436 C6orf226Q5I0X4 101 aa9.95□□□□□ -0.82
USHBP1-206ENST00000596436 HIST2H2BFQ5QNW6 126 aaPredicted RBP9.95□□□□□ -0.82
USHBP1-206ENST00000596436 Q6ZRP5 223 aa9.95□□□□□ -0.82
USHBP1-206ENST00000596436 HIST1H2BHQ93079 126 aa9.95□□□□□ -0.82
USHBP1-206ENST00000596436 HIST1H2BNQ99877 126 aa9.95□□□□□ -0.82
USHBP1-206ENST00000596436 HIST1H2BMQ99879 126 aa9.95□□□□□ -0.82
USHBP1-206ENST00000596436 TRBV30A0A0K0K1B3 111 aa9.94□□□□□ -0.82
USHBP1-206ENST00000596436 CKS1BP61024 79 aa9.94□□□□□ -0.82
USHBP1-206ENST00000596436 COX7B2Q8TF08 81 aa9.94□□□□□ -0.82
USHBP1-206ENST00000596436 LINC01600Q96MT4 127 aa9.94□□□□□ -0.82
USHBP1-206ENST00000596436 CHTOPQ9Y3Y2 248 aaKnown RBP9.94□□□□□ -0.82
USHBP1-206ENST00000596436 TRAV12-1A0A0B4J245 112 aa9.93□□□□□ -0.82
USHBP1-206ENST00000596436 ATP6V1G1O75348 118 aa9.93□□□□□ -0.82
USHBP1-206ENST00000596436 IGLV5-39A0A0G2JS06 123 aa9.92□□□□□ -0.82
USHBP1-206ENST00000596436 A0A1W2PNN7 141 aa9.92□□□□□ -0.82
USHBP1-206ENST00000596436 H3BRM9 83 aa9.92□□□□□ -0.82
USHBP1-206ENST00000596436 F8VRH5 84 aa9.91□□□□□ -0.82
USHBP1-206ENST00000596436 LEPROTL1O95214 131 aa9.91□□□□□ -0.82
USHBP1-206ENST00000596436 NDUFC2-KCTD14E9PQ53 114 aa9.9□□□□□ -0.82
USHBP1-206ENST00000596436 FABP4P15090 132 aa9.9□□□□□ -0.82
USHBP1-206ENST00000596436 S100A1P23297 94 aa9.9□□□□□ -0.82
USHBP1-206ENST00000596436 CXCL5P42830 114 aa9.9□□□□□ -0.82
USHBP1-206ENST00000596436 GAGE2EQ4V326 116 aa9.9□□□□□ -0.82
USHBP1-206ENST00000596436 TMEM170BQ5T4T1 132 aa9.9□□□□□ -0.82
USHBP1-206ENST00000596436 C7orf33Q8WU49 177 aa9.9□□□□□ -0.82
USHBP1-206ENST00000596436 GAGE2DQ9UEU5 116 aa9.9□□□□□ -0.82
USHBP1-206ENST00000596436 FAM168BA1KXE4 195 aa9.89□□□□□ -0.83
USHBP1-206ENST00000596436 H0Y8G0 127 aa9.89□□□□□ -0.83
USHBP1-206ENST00000596436 PRR3P79522 188 aaKnown RBP9.89□□□□□ -0.83
USHBP1-206ENST00000596436 ODF1Q14990 250 aa9.89□□□□□ -0.83
USHBP1-206ENST00000596436 C9orf129Q5T035 196 aaKnown RBP9.88□□□□□ -0.83
USHBP1-206ENST00000596436 KRTAP7-1Q8IUC3 87 aa9.88□□□□□ -0.83
USHBP1-206ENST00000596436 KRTAP10-8P60410 259 aa9.87□□□□□ -0.83
USHBP1-206ENST00000596436 HSPB8Q9UJY1 196 aa9.87□□□□□ -0.83
USHBP1-206ENST00000596436 TMEM223A0PJW6 202 aa9.86□□□□□ -0.83
USHBP1-206ENST00000596436 PHF5AQ7RTV0 110 aaKnown RBP9.85□□□□□ -0.83
USHBP1-206ENST00000596436 FAM19A5Q7Z5A7 132 aaPredicted RBP9.85□□□□□ -0.83
USHBP1-206ENST00000596436 PMCHL2Q9BQD1 86 aa9.84□□□□□ -0.83
USHBP1-206ENST00000596436 XAGE1AQ9HD64 81 aa9.83□□□□□ -0.84
USHBP1-206ENST00000596436 SRSF9Q13242 221 aaKnown RBP eCLIP9.82□□□□□ -0.84
USHBP1-206ENST00000596436 COA6Q5JTJ3 125 aaKnown RBP9.82□□□□□ -0.84
USHBP1-206ENST00000596436 SPINK6Q6UWN8 80 aa9.82□□□□□ -0.84
USHBP1-206ENST00000596436 KRTAP11-1Q8IUC1 163 aa9.81□□□□□ -0.84
USHBP1-206ENST00000596436 ZNF625Q96I27 306 aaPredicted RBP9.81□□□□□ -0.84
USHBP1-206ENST00000596436 MAP1LC3CQ9BXW4 147 aa9.8□□□□□ -0.84
USHBP1-206ENST00000596436 M0QXV9 152 aa9.79□□□□□ -0.84
USHBP1-206ENST00000596436 DPM2O94777 84 aa9.79□□□□□ -0.84
USHBP1-206ENST00000596436 PLNP26678 52 aa9.79□□□□□ -0.84
USHBP1-206ENST00000596436 ERG28Q9UKR5 140 aa9.79□□□□□ -0.84
USHBP1-206ENST00000596436 PFN2P35080 140 aa9.78□□□□□ -0.84
USHBP1-206ENST00000596436 TSPEAR-AS2P59090 65 aa9.78□□□□□ -0.84
USHBP1-206ENST00000596436 REG3GQ6UW15 175 aa9.78□□□□□ -0.84
USHBP1-206ENST00000596436 SYS1-DBNDD2H3BUS1 97 aa9.77□□□□□ -0.85
USHBP1-206ENST00000596436 IGKCP01834 107 aa9.77□□□□□ -0.85
USHBP1-206ENST00000596436 PSORS1C2Q9UIG4 136 aa9.77□□□□□ -0.85
USHBP1-206ENST00000596436 LPAP08519 4548 aa9.75□□□□□ -0.85
USHBP1-206ENST00000596436 SFTA2Q6UW10 78 aa9.75□□□□□ -0.85
USHBP1-206ENST00000596436 C22orf24Q9Y442 160 aa9.74□□□□□ -0.85
USHBP1-206ENST00000596436 LEPROTO15243 131 aa9.73□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 30.2 ms