RNA–Protein interactions for RNA: ENST00000589604.5

VPS4B-204, Transcript of vacuolar protein sorting 4 homolog B, humanhuman

TSL 1 (best)

Gene VPS4B, Length 1,672 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4B-204ENST00000589604 DNAH10Q8IVF4 4471 aa6.99□□□□□ -1.29
VPS4B-204ENST00000589604 CD164L2Q6UWJ8 174 aa6.99□□□□□ -1.29
VPS4B-204ENST00000589604 UBE2WQ96B02 151 aa6.99□□□□□ -1.29
VPS4B-204ENST00000589604 PLEKHB2Q96CS7 222 aa6.99□□□□□ -1.29
VPS4B-204ENST00000589604 NBDYA0A0U1RRE5 68 aa6.98□□□□□ -1.29
VPS4B-204ENST00000589604 MYMXA0A1B0GTQ4 84 aa6.98□□□□□ -1.29
VPS4B-204ENST00000589604 LINC01561Q8N1V8 128 aa6.98□□□□□ -1.29
VPS4B-204ENST00000589604 BIRC6Q9NR09 4857 aa6.98□□□□□ -1.29
VPS4B-204ENST00000589604 HNRNPA3P51991 378 aaKnown RBP6.97□□□□□ -1.29
VPS4B-204ENST00000589604 CTAG1AP78358 180 aa6.97□□□□□ -1.29
VPS4B-204ENST00000589604 RNF151Q2KHN1 245 aa6.97□□□□□ -1.29
VPS4B-204ENST00000589604 TRAV8-4A0A0B4J246 113 aa6.96□□□□□ -1.29
VPS4B-204ENST00000589604 ZNF815PA8K554 130 aa6.96□□□□□ -1.29
VPS4B-204ENST00000589604 IBA57-AS1B1ANH7 110 aa6.96□□□□□ -1.29
VPS4B-204ENST00000589604 PLA2G1BP04054 148 aaKnown RBP6.96□□□□□ -1.29
VPS4B-204ENST00000589604 MIAQ16674 131 aa6.96□□□□□ -1.29
VPS4B-204ENST00000589604 HIGD1BQ9P298 99 aa6.96□□□□□ -1.29
VPS4B-204ENST00000589604 FAT2Q9NYQ8 4349 aa6.96□□□□□ -1.3
VPS4B-204ENST00000589604 GAGE12HA6NDE8 117 aa6.96□□□□□ -1.3
VPS4B-204ENST00000589604 PRYO14603 147 aa6.96□□□□□ -1.3
VPS4B-204ENST00000589604 LGALS3P17931 250 aaKnown RBP6.96□□□□□ -1.3
VPS4B-204ENST00000589604 LBHQ53QV2 105 aaPredicted RBP6.96□□□□□ -1.3
VPS4B-204ENST00000589604 C10orf126Q8N4M7 172 aa6.96□□□□□ -1.3
VPS4B-204ENST00000589604 COX7A2LO14548 114 aa6.95□□□□□ -1.3
VPS4B-204ENST00000589604 CRPP02741 224 aa6.95□□□□□ -1.3
VPS4B-204ENST00000589604 ZNF625Q96I27 306 aaPredicted RBP6.95□□□□□ -1.3
VPS4B-204ENST00000589604 NDUFA12Q9UI09 145 aa6.95□□□□□ -1.3
VPS4B-204ENST00000589604 EPPK1P58107 5090 aaKnown RBP6.95□□□□□ -1.3
VPS4B-204ENST00000589604 DNAH17Q9UFH2 4485 aa6.95□□□□□ -1.3
VPS4B-204ENST00000589604 KIAA0087Q14695 138 aa6.94□□□□□ -1.3
VPS4B-204ENST00000589604 A0A0J9YXY3 114 aa6.93□□□□□ -1.3
VPS4B-204ENST00000589604 NDUFA1O15239 70 aa6.93□□□□□ -1.3
VPS4B-204ENST00000589604 RTL8CO15255 209 aa6.93□□□□□ -1.3
VPS4B-204ENST00000589604 COX7B2Q8TF08 81 aa6.93□□□□□ -1.3
VPS4B-204ENST00000589604 LITAFQ99732 161 aa6.93□□□□□ -1.3
VPS4B-204ENST00000589604 SNHG12Q9BXW3 62 aa6.93□□□□□ -1.3
VPS4B-204ENST00000589604 Q6ZRN7 208 aaPredicted RBP6.92□□□□□ -1.3
VPS4B-204ENST00000589604 PKD1P98161 4303 aa6.91□□□□□ -1.3
VPS4B-204ENST00000589604 A0A0A0MQY5 61 aa6.91□□□□□ -1.3
VPS4B-204ENST00000589604 K7EP13 123 aa6.91□□□□□ -1.3
VPS4B-204ENST00000589604 TTC32Q5I0X7 151 aa6.91□□□□□ -1.3
VPS4B-204ENST00000589604 Q8IZM0 81 aa6.91□□□□□ -1.3
VPS4B-204ENST00000589604 Q9HAA7 133 aa6.91□□□□□ -1.3
VPS4B-204ENST00000589604 TOMM7Q9P0U1 55 aa6.91□□□□□ -1.3
VPS4B-204ENST00000589604 HECTD4Q9Y4D8 3996 aa6.91□□□□□ -1.3
VPS4B-204ENST00000589604 IGKV2D-24A0A075B6R9 120 aa6.9□□□□□ -1.3
VPS4B-204ENST00000589604 HINT1P49773 126 aaPredicted RBP6.9□□□□□ -1.3
VPS4B-204ENST00000589604 BVES-AS1Q5T3Y7 98 aa6.9□□□□□ -1.3
VPS4B-204ENST00000589604 ADAMTSL4-AS1Q5T5F5 129 aa6.9□□□□□ -1.3
VPS4B-204ENST00000589604 SCGB1D4Q6XE38 83 aa6.9□□□□□ -1.3
VPS4B-204ENST00000589604 C6orf223Q8N319 242 aa6.9□□□□□ -1.3
VPS4B-204ENST00000589604 ORAOV1Q8WV07 137 aa6.9□□□□□ -1.3
VPS4B-204ENST00000589604 HSD52Q0P140 79 aa6.9□□□□□ -1.31
VPS4B-204ENST00000589604 C1orf134Q5TEV5 83 aa6.9□□□□□ -1.31
VPS4B-204ENST00000589604 C15orf56Q8N910 161 aa6.9□□□□□ -1.31
VPS4B-204ENST00000589604 SPANXB1Q9NS25 103 aaPredicted RBP6.9□□□□□ -1.31
VPS4B-204ENST00000589604 DNAH11Q96DT5 4516 aa6.89□□□□□ -1.31
VPS4B-204ENST00000589604 TAL2Q16559 108 aa6.89□□□□□ -1.31
VPS4B-204ENST00000589604 C2orf82Q6UX34 121 aa6.89□□□□□ -1.31
VPS4B-204ENST00000589604 M0R143 59 aa6.88□□□□□ -1.31
VPS4B-204ENST00000589604 TIMM17BO60830 172 aa6.88□□□□□ -1.31
VPS4B-204ENST00000589604 HERV-K104P63124 156 aa6.88□□□□□ -1.31
VPS4B-204ENST00000589604 C6orf226Q5I0X4 101 aa6.88□□□□□ -1.31
VPS4B-204ENST00000589604 LINC00526Q96FQ7 95 aa6.88□□□□□ -1.31
VPS4B-204ENST00000589604 TM2D2Q9BX73 214 aa6.88□□□□□ -1.31
VPS4B-204ENST00000589604 APOMO95445 188 aa6.87□□□□□ -1.31
VPS4B-204ENST00000589604 FXYD2P54710 66 aa6.87□□□□□ -1.31
VPS4B-204ENST00000589604 CEND1Q8N111 149 aa6.87□□□□□ -1.31
VPS4B-204ENST00000589604 SPAG11BQ08648 103 aa6.87□□□□□ -1.31
VPS4B-204ENST00000589604 C10orf25Q5T742 122 aa6.87□□□□□ -1.31
VPS4B-204ENST00000589604 NTN5Q8WTR8 489 aaPredicted RBP6.87□□□□□ -1.31
VPS4B-204ENST00000589604 HIST1H4GQ99525 98 aa6.87□□□□□ -1.31
VPS4B-204ENST00000589604 SPANXDQ9BXN6 97 aa6.87□□□□□ -1.31
VPS4B-204ENST00000589604 SPANXCQ9NY87 97 aa6.87□□□□□ -1.31
VPS4B-204ENST00000589604 PRSS2P07478 247 aa6.86□□□□□ -1.31
VPS4B-204ENST00000589604 UNQ6190/PRO20217Q6UXQ8 127 aa6.86□□□□□ -1.31
VPS4B-204ENST00000589604 PKHD1P08F94 4074 aa6.86□□□□□ -1.31
VPS4B-204ENST00000589604 GVQW2A0A096LPI5 108 aaPredicted RBP6.85□□□□□ -1.31
VPS4B-204ENST00000589604 SMIM13P0DJ93 91 aa6.85□□□□□ -1.31
VPS4B-204ENST00000589604 SRSF9Q13242 221 aaKnown RBP eCLIP6.85□□□□□ -1.31
VPS4B-204ENST00000589604 BATFQ16520 125 aa6.85□□□□□ -1.31
VPS4B-204ENST00000589604 HIGD2BQ4VC39 106 aa6.85□□□□□ -1.31
VPS4B-204ENST00000589604 RMI2Q96E14 147 aa6.85□□□□□ -1.31
VPS4B-204ENST00000589604 A0A1B0GVY2 172 aa6.84□□□□□ -1.31
VPS4B-204ENST00000589604 C9orf118A6NHY6 69 aa6.84□□□□□ -1.31
VPS4B-204ENST00000589604 TMEM238C9JI98 176 aa6.84□□□□□ -1.31
VPS4B-204ENST00000589604 CXCL5P42830 114 aa6.84□□□□□ -1.31
VPS4B-204ENST00000589604 SFTA2Q6UW10 78 aa6.84□□□□□ -1.31
VPS4B-204ENST00000589604 MUSTN1Q8IVN3 82 aa6.84□□□□□ -1.31
VPS4B-204ENST00000589604 DAND5Q8N907 189 aa6.84□□□□□ -1.31
VPS4B-204ENST00000589604 A0A0U1RRA0 63 aa6.84□□□□□ -1.32
VPS4B-204ENST00000589604 CKS1BP61024 79 aa6.84□□□□□ -1.32
VPS4B-204ENST00000589604 WFDC2Q14508 124 aa6.84□□□□□ -1.32
VPS4B-204ENST00000589604 C9orf116Q5BN46 136 aaPredicted RBP6.84□□□□□ -1.32
VPS4B-204ENST00000589604 SOSTDC1Q6X4U4 206 aa6.84□□□□□ -1.32
VPS4B-204ENST00000589604 COX11Q9Y6N1 276 aa6.84□□□□□ -1.32
VPS4B-204ENST00000589604 SLPIP03973 132 aa6.83□□□□□ -1.32
VPS4B-204ENST00000589604 MEIG1Q5JSS6 88 aa6.83□□□□□ -1.32
VPS4B-204ENST00000589604 LCE2CQ5TA81 110 aa6.83□□□□□ -1.32
VPS4B-204ENST00000589604 Q6ZVH6 145 aa6.83□□□□□ -1.32
Retrieved 100 of 20,778 RNA–protein pairs in 58.1 ms