RNA–Protein interactions for RNA: ENST00000578595.1

SS18-209, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 3

Gene SS18, Length 406 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-209ENST00000578595 KRTAP10-4P60372 401 aaPredicted RBP12.27□□□□□ -0.45
SS18-209ENST00000578595 Q8IZM0 81 aa12.27□□□□□ -0.45
SS18-209ENST00000578595 ATP5LO75964 103 aa12.26□□□□□ -0.45
SS18-209ENST00000578595 BAGE3Q86Y29 109 aa12.26□□□□□ -0.45
SS18-209ENST00000578595 TRGC2P03986 189 aa12.25□□□□□ -0.45
SS18-209ENST00000578595 SPINK8P0C7L1 97 aa12.25□□□□□ -0.45
SS18-209ENST00000578595 C9orf116Q5BN46 136 aaPredicted RBP12.25□□□□□ -0.45
SS18-209ENST00000578595 SMIM1B2RUZ4 78 aa12.24□□□□□ -0.45
SS18-209ENST00000578595 H3BRM9 83 aa12.24□□□□□ -0.45
SS18-209ENST00000578595 J3QL48 77 aa12.24□□□□□ -0.45
SS18-209ENST00000578595 CHCHD1Q96BP2 118 aaKnown RBP12.24□□□□□ -0.45
SS18-209ENST00000578595 HSBP1O75506 76 aa12.23□□□□□ -0.45
SS18-209ENST00000578595 PDZD11Q5EBL8 140 aa12.23□□□□□ -0.45
SS18-209ENST00000578595 Q6ZRP5 223 aa12.23□□□□□ -0.45
SS18-209ENST00000578595 A0A1W2PNN7 141 aa12.22□□□□□ -0.45
SS18-209ENST00000578595 TLX1NBP0CAT3 122 aa12.22□□□□□ -0.45
SS18-209ENST00000578595 COX7B2Q8TF08 81 aa12.22□□□□□ -0.45
SS18-209ENST00000578595 IGLV5-45A0A087WSX0 123 aa12.21□□□□□ -0.45
SS18-209ENST00000578595 HNRNPA3P51991 378 aaKnown RBP12.21□□□□□ -0.45
SS18-209ENST00000578595 FAM19A5Q7Z5A7 132 aaPredicted RBP12.21□□□□□ -0.45
SS18-209ENST00000578595 NDUFC2-KCTD14E9PQ53 114 aa12.2□□□□□ -0.46
SS18-209ENST00000578595 F8VRH5 84 aa12.2□□□□□ -0.46
SS18-209ENST00000578595 IGLC3P0DOY3 106 aa12.2□□□□□ -0.46
SS18-209ENST00000578595 CXCL5P42830 114 aa12.2□□□□□ -0.46
SS18-209ENST00000578595 PRR3P79522 188 aaKnown RBP12.19□□□□□ -0.46
SS18-209ENST00000578595 FAM19A2Q8N3H0 131 aa12.19□□□□□ -0.46
SS18-209ENST00000578595 FAM168BA1KXE4 195 aa12.18□□□□□ -0.46
SS18-209ENST00000578595 ZNF22P17026 224 aaPredicted RBP12.18□□□□□ -0.46
SS18-209ENST00000578595 TMEM170BQ5T4T1 132 aa12.18□□□□□ -0.46
SS18-209ENST00000578595 PHF5AQ7RTV0 110 aaKnown RBP12.18□□□□□ -0.46
SS18-209ENST00000578595 IFI27L1Q96BM0 104 aa12.18□□□□□ -0.46
SS18-209ENST00000578595 MYCBP2O75592 4640 aa12.18□□□□□ -0.46
SS18-209ENST00000578595 CHTOPQ9Y3Y2 248 aaKnown RBP12.17□□□□□ -0.46
SS18-209ENST00000578595 COLCA2A8K830 154 aa12.16□□□□□ -0.46
SS18-209ENST00000578595 H0Y8G0 127 aa12.16□□□□□ -0.46
SS18-209ENST00000578595 SCO1O75880 301 aa12.16□□□□□ -0.46
SS18-209ENST00000578595 SERF1AO75920 110 aa12.15□□□□□ -0.46
SS18-209ENST00000578595 C11orf86A6NJI1 115 aa12.14□□□□□ -0.47
SS18-209ENST00000578595 PKHD1L1Q86WI1 4243 aa12.13□□□□□ -0.47
SS18-209ENST00000578595 M0QXV9 152 aa12.13□□□□□ -0.47
SS18-209ENST00000578595 XAGE1AQ9HD64 81 aa12.13□□□□□ -0.47
SS18-209ENST00000578595 KRTAP29-1A8MX34 341 aaPredicted RBP12.12□□□□□ -0.47
SS18-209ENST00000578595 UBE2BP63146 152 aa12.12□□□□□ -0.47
SS18-209ENST00000578595 C9orf129Q5T035 196 aaKnown RBP12.12□□□□□ -0.47
SS18-209ENST00000578595 LEPROTL1O95214 131 aa12.11□□□□□ -0.47
SS18-209ENST00000578595 TRAV12-1A0A0B4J245 112 aa12.09□□□□□ -0.47
SS18-209ENST00000578595 OXTP01178 125 aa12.09□□□□□ -0.47
SS18-209ENST00000578595 FABP4P15090 132 aa12.09□□□□□ -0.47
SS18-209ENST00000578595 PSORS1C2Q9UIG4 136 aa12.09□□□□□ -0.47
SS18-209ENST00000578595 IGLV5-39A0A0G2JS06 123 aa12.08□□□□□ -0.48
SS18-209ENST00000578595 C1orf137Q5JT78 98 aa12.08□□□□□ -0.48
SS18-209ENST00000578595 PFN2P35080 140 aa12.07□□□□□ -0.48
SS18-209ENST00000578595 LINC00310P59036 64 aa12.07□□□□□ -0.48
SS18-209ENST00000578595 ZNF625Q96I27 306 aaPredicted RBP12.06□□□□□ -0.48
SS18-209ENST00000578595 HSPB8Q9UJY1 196 aa12.06□□□□□ -0.48
SS18-209ENST00000578595 NUPR1O60356 82 aa12.05□□□□□ -0.48
SS18-209ENST00000578595 SERTAD4-AS1Q5TG53 156 aa12.05□□□□□ -0.48
SS18-209ENST00000578595 TMEM223A0PJW6 202 aa12.03□□□□□ -0.48
SS18-209ENST00000578595 KRTAP7-1Q8IUC3 87 aa12.03□□□□□ -0.48
SS18-209ENST00000578595 ERG28Q9UKR5 140 aa12.03□□□□□ -0.48
SS18-209ENST00000578595 ODF1Q14990 250 aa12.02□□□□□ -0.49
SS18-209ENST00000578595 SPINK6Q6UWN8 80 aa12.02□□□□□ -0.49
SS18-209ENST00000578595 LRP1Q07954 4544 aaKnown RBP12.02□□□□□ -0.49
SS18-209ENST00000578595 HIST1H2BKO60814 126 aa12.01□□□□□ -0.49
SS18-209ENST00000578595 HIST1H2BJP06899 126 aa12.01□□□□□ -0.49
SS18-209ENST00000578595 HIST1H2BOP23527 126 aa12.01□□□□□ -0.49
SS18-209ENST00000578595 HIST1H2BBP33778 126 aa12.01□□□□□ -0.49
SS18-209ENST00000578595 HIST1H2BDP58876 126 aa12.01□□□□□ -0.49
SS18-209ENST00000578595 HIST1H2BCP62807 126 aa12.01□□□□□ -0.49
SS18-209ENST00000578595 HIST2H2BEQ16778 126 aa12.01□□□□□ -0.49
SS18-209ENST00000578595 HIST2H2BFQ5QNW6 126 aaPredicted RBP12.01□□□□□ -0.49
SS18-209ENST00000578595 SFTA2Q6UW10 78 aa12.01□□□□□ -0.49
SS18-209ENST00000578595 HIST1H2BHQ93079 126 aa12.01□□□□□ -0.49
SS18-209ENST00000578595 HIST1H2BNQ99877 126 aa12.01□□□□□ -0.49
SS18-209ENST00000578595 HIST1H2BMQ99879 126 aa12.01□□□□□ -0.49
SS18-209ENST00000578595 C22orf24Q9Y442 160 aa12.01□□□□□ -0.49
SS18-209ENST00000578595 LBHQ53QV2 105 aaPredicted RBP12□□□□□ -0.49
SS18-209ENST00000578595 REG3GQ6UW15 175 aa12□□□□□ -0.49
SS18-209ENST00000578595 KRTAP11-1Q8IUC1 163 aa12□□□□□ -0.49
SS18-209ENST00000578595 NKAPP1Q8N9T2 125 aa11.99□□□□□ -0.49
SS18-209ENST00000578595 FAT3Q8TDW7 4589 aa11.98□□□□□ -0.49
SS18-209ENST00000578595 A0A0U1RRA0 63 aa11.98□□□□□ -0.49
SS18-209ENST00000578595 MRPL55Q7Z7F7 128 aaKnown RBP11.98□□□□□ -0.49
SS18-209ENST00000578595 PMCHL2Q9BQD1 86 aa11.98□□□□□ -0.49
SS18-209ENST00000578595 MAP1LC3CQ9BXW4 147 aa11.98□□□□□ -0.49
SS18-209ENST00000578595 GAGE10A6NGK3 116 aa11.97□□□□□ -0.49
SS18-209ENST00000578595 IGLV7-43P04211 117 aa11.97□□□□□ -0.49
SS18-209ENST00000578595 PLNP26678 52 aa11.97□□□□□ -0.49
SS18-209ENST00000578595 LINC00158P58513 81 aa11.97□□□□□ -0.49
SS18-209ENST00000578595 DPM2O94777 84 aa11.96□□□□□ -0.49
SS18-209ENST00000578595 MEIG1Q5JSS6 88 aa11.96□□□□□ -0.49
SS18-209ENST00000578595 ATP6V1G1O75348 118 aa11.95□□□□□ -0.5
SS18-209ENST00000578595 HERVK_113P61574 105 aa11.95□□□□□ -0.5
SS18-209ENST00000578595 SRSF9Q13242 221 aaKnown RBP eCLIP11.95□□□□□ -0.5
SS18-209ENST00000578595 COX17Q14061 63 aa11.95□□□□□ -0.5
SS18-209ENST00000578595 HERC1Q15751 4861 aa11.95□□□□□ -0.5
SS18-209ENST00000578595 IGKCP01834 107 aa11.94□□□□□ -0.5
SS18-209ENST00000578595 SND1-IT1Q9HBX3 110 aa11.94□□□□□ -0.5
SS18-209ENST00000578595 TP73-AS1Q9UF72 201 aa11.94□□□□□ -0.5
SS18-209ENST00000578595 RPL37AP8A6NKH3 93 aa11.93□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 34.8 ms