RNA–Protein interactions for RNA: ENST00000575207.5

VPS53-218, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4

Gene VPS53, Length 575 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-218ENST00000575207 M0R378 163 aa8.43□□□□□ -1.06
VPS53-218ENST00000575207 Q8IZM0 81 aa8.43□□□□□ -1.06
VPS53-218ENST00000575207 C11orf52Q96A22 123 aa8.43□□□□□ -1.06
VPS53-218ENST00000575207 BIN3Q9NQY0 253 aa8.43□□□□□ -1.06
VPS53-218ENST00000575207 FXYD6-FXYD2A0A087WZ82 144 aa8.42□□□□□ -1.06
VPS53-218ENST00000575207 A0A1B0GV50 99 aa8.42□□□□□ -1.06
VPS53-218ENST00000575207 GIPP09681 153 aaPredicted RBP8.42□□□□□ -1.06
VPS53-218ENST00000575207 SUMO2P61956 95 aaKnown RBP8.42□□□□□ -1.06
VPS53-218ENST00000575207 KCNRGQ8N5I3 272 aa8.41□□□□□ -1.06
VPS53-218ENST00000575207 SFT2D1Q8WV19 159 aa8.41□□□□□ -1.06
VPS53-218ENST00000575207 ALKBH7Q9BT30 221 aaPredicted RBP8.41□□□□□ -1.06
VPS53-218ENST00000575207 TRBV20OR9-2A0A075B6H5 130 aa8.4□□□□□ -1.06
VPS53-218ENST00000575207 KRTAP10-10P60014 251 aa8.4□□□□□ -1.06
VPS53-218ENST00000575207 CCL20P78556 96 aa8.4□□□□□ -1.06
VPS53-218ENST00000575207 MOBPQ13875 183 aa8.4□□□□□ -1.06
VPS53-218ENST00000575207 Q6ZN92 141 aa8.4□□□□□ -1.06
VPS53-218ENST00000575207 LINC01551Q86U37 167 aa8.4□□□□□ -1.06
VPS53-218ENST00000575207 GPR98Q8WXG9 6306 aa8.39□□□□□ -1.07
VPS53-218ENST00000575207 SMKR1H3BMG3 65 aa8.38□□□□□ -1.07
VPS53-218ENST00000575207 RAB4AP20338 218 aa8.38□□□□□ -1.07
VPS53-218ENST00000575207 SSBP3-AS1Q7Z2R9 100 aa8.38□□□□□ -1.07
VPS53-218ENST00000575207 PPP1R17O96001 155 aa8.37□□□□□ -1.07
VPS53-218ENST00000575207 RPL37P61927 97 aaKnown RBP8.37□□□□□ -1.07
VPS53-218ENST00000575207 TMEM191AQ9H0A3 160 aa8.37□□□□□ -1.07
VPS53-218ENST00000575207 IGLV6-57P01721 117 aa8.36□□□□□ -1.07
VPS53-218ENST00000575207 RGS21Q2M5E4 152 aa8.36□□□□□ -1.07
VPS53-218ENST00000575207 NRACQ8N912 160 aa8.36□□□□□ -1.07
VPS53-218ENST00000575207 MBD3L1Q8WWY6 194 aa8.36□□□□□ -1.07
VPS53-218ENST00000575207 IGLV9-49A0A0B4J1Y8 123 aa8.35□□□□□ -1.07
VPS53-218ENST00000575207 PPP1R2P9O14990 202 aa8.35□□□□□ -1.07
VPS53-218ENST00000575207 ARPC5O15511 151 aa8.35□□□□□ -1.07
VPS53-218ENST00000575207 Q5BKY6 102 aa8.35□□□□□ -1.07
VPS53-218ENST00000575207 AMN1Q8IY45 258 aa8.35□□□□□ -1.07
VPS53-218ENST00000575207 TCAPO15273 167 aa8.34□□□□□ -1.07
VPS53-218ENST00000575207 LINC00483Q53H64 154 aa8.34□□□□□ -1.07
VPS53-218ENST00000575207 CXCL5P42830 114 aa8.32□□□□□ -1.08
VPS53-218ENST00000575207 FAM213BQ8TBF2 198 aa8.32□□□□□ -1.08
VPS53-218ENST00000575207 BORCS7Q96B45 105 aa8.32□□□□□ -1.08
VPS53-218ENST00000575207 IFI27P40305 119 aaPredicted RBP8.31□□□□□ -1.08
VPS53-218ENST00000575207 IGLV4-3A0A075B6K6 122 aa8.29□□□□□ -1.08
VPS53-218ENST00000575207 RAB5BP61020 215 aa8.29□□□□□ -1.08
VPS53-218ENST00000575207 MANBALQ9NQG1 85 aa8.29□□□□□ -1.08
VPS53-218ENST00000575207 KANTRA0A1W2PQU2 76 aa8.28□□□□□ -1.08
VPS53-218ENST00000575207 VPREB1P12018 145 aa8.28□□□□□ -1.08
VPS53-218ENST00000575207 GAGE2AQ6NT46 116 aa8.28□□□□□ -1.08
VPS53-218ENST00000575207 TEX43Q6ZNM6 134 aa8.28□□□□□ -1.08
VPS53-218ENST00000575207 FAM231DQ6ZW35 169 aa8.28□□□□□ -1.08
VPS53-218ENST00000575207 TMEM141Q96I45 108 aa8.28□□□□□ -1.08
VPS53-218ENST00000575207 GNG13Q9P2W3 67 aa8.28□□□□□ -1.08
VPS53-218ENST00000575207 SMLR1H3BR10 107 aa8.27□□□□□ -1.09
VPS53-218ENST00000575207 NPSP0C0P6 89 aa8.27□□□□□ -1.09
VPS53-218ENST00000575207 SMCR5Q8TEV8 140 aa8.27□□□□□ -1.09
VPS53-218ENST00000575207 C20orf78Q9BR46 151 aa8.27□□□□□ -1.09
VPS53-218ENST00000575207 C2orf88Q9BSF0 95 aa8.27□□□□□ -1.09
VPS53-218ENST00000575207 A0A1B0GUT8 65 aa8.26□□□□□ -1.09
VPS53-218ENST00000575207 A8MWL6 223 aa8.26□□□□□ -1.09
VPS53-218ENST00000575207 UMAD1C9J7I0 102 aa8.26□□□□□ -1.09
VPS53-218ENST00000575207 K7EN84 100 aa8.26□□□□□ -1.09
VPS53-218ENST00000575207 LGALS3P17931 250 aaKnown RBP8.26□□□□□ -1.09
VPS53-218ENST00000575207 ZNF345Q14585 488 aa8.26□□□□□ -1.09
VPS53-218ENST00000575207 AKAP14Q86UN6 197 aa8.26□□□□□ -1.09
VPS53-218ENST00000575207 TIMM17AQ99595 171 aa8.26□□□□□ -1.09
VPS53-218ENST00000575207 PYGO1Q9Y3Y4 419 aa8.26□□□□□ -1.09
VPS53-218ENST00000575207 H2AFB1P0C5Y9 115 aa8.25□□□□□ -1.09
VPS53-218ENST00000575207 EIF5A2Q9GZV4 153 aaKnown RBP8.25□□□□□ -1.09
VPS53-218ENST00000575207 MED9Q9NWA0 146 aa8.25□□□□□ -1.09
VPS53-218ENST00000575207 C20orf202A1L168 122 aa8.23□□□□□ -1.09
VPS53-218ENST00000575207 TEX46H3BTG2 121 aa8.23□□□□□ -1.09
VPS53-218ENST00000575207 GATCO43716 136 aaKnown RBP8.23□□□□□ -1.09
VPS53-218ENST00000575207 PDE6DO43924 150 aa8.23□□□□□ -1.09
VPS53-218ENST00000575207 RPL24P83731 157 aaKnown RBP8.23□□□□□ -1.09
VPS53-218ENST00000575207 SMIM2Q9BVW6 85 aa8.23□□□□□ -1.09
VPS53-218ENST00000575207 HMSDA8MTL9 139 aa8.22□□□□□ -1.09
VPS53-218ENST00000575207 KRTAP5-9P26371 169 aa8.22□□□□□ -1.09
VPS53-218ENST00000575207 OCC1Q8TAD7 63 aa8.22□□□□□ -1.09
VPS53-218ENST00000575207 LIMD2Q9BT23 127 aa8.22□□□□□ -1.09
VPS53-218ENST00000575207 CDKN2A-AS1Q9UH64 79 aa8.22□□□□□ -1.09
VPS53-218ENST00000575207 TRBV24-1A0A075B6N3 115 aa8.21□□□□□ -1.1
VPS53-218ENST00000575207 ZC2HC1BQ5TFG8 222 aa8.21□□□□□ -1.1
VPS53-218ENST00000575207 SMCPP49901 116 aaPredicted RBP8.2□□□□□ -1.1
VPS53-218ENST00000575207 HIGD1CA8MV81 97 aa8.19□□□□□ -1.1
VPS53-218ENST00000575207 MRPL51Q4U2R6 128 aaKnown RBP8.19□□□□□ -1.1
VPS53-218ENST00000575207 FAM19A3Q7Z5A8 133 aa8.19□□□□□ -1.1
VPS53-218ENST00000575207 HERVK_113P63121 156 aa8.18□□□□□ -1.1
VPS53-218ENST00000575207 CT83Q5H943 113 aa8.18□□□□□ -1.1
VPS53-218ENST00000575207 C9orf153Q5TBE3 101 aa8.18□□□□□ -1.1
VPS53-218ENST00000575207 LINC00862A6NCI5 91 aa8.17□□□□□ -1.1
VPS53-218ENST00000575207 RAB14P61106 215 aa8.17□□□□□ -1.1
VPS53-218ENST00000575207 COX7B2Q8TF08 81 aa8.17□□□□□ -1.1
VPS53-218ENST00000575207 C2orf66Q6UXQ4 117 aa8.16□□□□□ -1.1
VPS53-218ENST00000575207 Q8NDZ9 215 aa8.16□□□□□ -1.1
VPS53-218ENST00000575207 AMELXQ99217 191 aa8.16□□□□□ -1.1
VPS53-218ENST00000575207 VCX2Q9H322 139 aa8.16□□□□□ -1.1
VPS53-218ENST00000575207 SND1-IT1Q9HBX3 110 aa8.16□□□□□ -1.1
VPS53-218ENST00000575207 SEC11AP67812 179 aa8.15□□□□□ -1.1
VPS53-218ENST00000575207 SMIM1B2RUZ4 78 aa8.14□□□□□ -1.11
VPS53-218ENST00000575207 RAB5AP20339 215 aa8.14□□□□□ -1.11
VPS53-218ENST00000575207 CKS2P33552 79 aa8.14□□□□□ -1.11
VPS53-218ENST00000575207 PFN2P35080 140 aa8.14□□□□□ -1.11
VPS53-218ENST00000575207 FAM104BQ5XKR9 115 aa8.14□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 294.8 ms