RNA–Protein interactions for RNA: ENST00000574087.1

NUP88-208, Transcript of nucleoporin 88, humanhuman

TSL 2

Gene NUP88, Length 548 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-208ENST00000574087 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP2.14□□□□□ -2.07
NUP88-208ENST00000574087 LINC00322Q6ZN03 302 aaPredicted RBP2.14□□□□□ -2.07
NUP88-208ENST00000574087 Q86TA4 180 aa2.14□□□□□ -2.07
NUP88-208ENST00000574087 HEATR1Q9H583 2144 aaKnown RBP2.14□□□□□ -2.07
NUP88-208ENST00000574087 MALRD1Q5VYJ5 2156 aa2.13□□□□□ -2.07
NUP88-208ENST00000574087 MYO7AQ13402 2215 aa2.13□□□□□ -2.07
NUP88-208ENST00000574087 TRAV12-3A0A0B4J271 114 aa2.13□□□□□ -2.07
NUP88-208ENST00000574087 IGHV1-18A0A0C4DH31 117 aa2.13□□□□□ -2.07
NUP88-208ENST00000574087 TRBV7-4A0A0J9YYF1 115 aa2.13□□□□□ -2.07
NUP88-208ENST00000574087 C11orf86A6NJI1 115 aa2.13□□□□□ -2.07
NUP88-208ENST00000574087 M0R3E3 92 aa2.13□□□□□ -2.07
NUP88-208ENST00000574087 BAALC-AS2P0C853 105 aa2.13□□□□□ -2.07
NUP88-208ENST00000574087 PRB4P10163 310 aaPredicted RBP2.13□□□□□ -2.07
NUP88-208ENST00000574087 SPINK9Q5DT21 86 aa2.13□□□□□ -2.07
NUP88-208ENST00000574087 MUSTN1Q8IVN3 82 aa2.13□□□□□ -2.07
NUP88-208ENST00000574087 TMEM14CQ9P0S9 112 aa2.13□□□□□ -2.07
NUP88-208ENST00000574087 A0A1W2PNM2 257 aa2.12□□□□□ -2.07
NUP88-208ENST00000574087 ODF3BA8MYP8 253 aa2.12□□□□□ -2.07
NUP88-208ENST00000574087 H3BQ85 93 aa2.12□□□□□ -2.07
NUP88-208ENST00000574087 DNAL4O96015 105 aa2.12□□□□□ -2.07
NUP88-208ENST00000574087 PRCDQ00LT1 54 aa2.12□□□□□ -2.07
NUP88-208ENST00000574087 KRTAP6-3Q3LI67 103 aa2.12□□□□□ -2.07
NUP88-208ENST00000574087 Q8TAT8 98 aa2.12□□□□□ -2.07
NUP88-208ENST00000574087 NDUFA4L2Q9NRX3 87 aa2.12□□□□□ -2.07
NUP88-208ENST00000574087 Q9Y3F1 56 aa2.12□□□□□ -2.07
NUP88-208ENST00000574087 HEATR5BQ9P2D3 2071 aa2.12□□□□□ -2.07
NUP88-208ENST00000574087 TRAV10A0A0B4J240 114 aa2.11□□□□□ -2.07
NUP88-208ENST00000574087 CLPSL1A2RUU4 121 aa2.11□□□□□ -2.07
NUP88-208ENST00000574087 I3L3M4 83 aa2.11□□□□□ -2.07
NUP88-208ENST00000574087 IGHV3-53P01767 116 aa2.11□□□□□ -2.07
NUP88-208ENST00000574087 TFF1P04155 84 aa2.11□□□□□ -2.07
NUP88-208ENST00000574087 SAA2P0DJI9 122 aaPredicted RBP2.11□□□□□ -2.07
NUP88-208ENST00000574087 PDE6HQ13956 83 aa2.11□□□□□ -2.07
NUP88-208ENST00000574087 CNFNQ9BYD5 112 aa2.11□□□□□ -2.07
NUP88-208ENST00000574087 DIDO1Q9BTC0 2240 aaKnown RBP2.1□□□□□ -2.07
NUP88-208ENST00000574087 IGKV3D-7A0A0C4DH55 119 aa2.1□□□□□ -2.07
NUP88-208ENST00000574087 IGLV7-43P04211 117 aa2.1□□□□□ -2.07
NUP88-208ENST00000574087 CRIP1P50238 77 aa2.1□□□□□ -2.07
NUP88-208ENST00000574087 DEFB113Q30KQ7 82 aa2.1□□□□□ -2.07
NUP88-208ENST00000574087 ZNF833PQ6ZTB9 187 aa2.1□□□□□ -2.07
NUP88-208ENST00000574087 Q8NAQ8 132 aa2.1□□□□□ -2.07
NUP88-208ENST00000574087 TMEM254Q8TBM7 123 aa2.1□□□□□ -2.07
NUP88-208ENST00000574087 ZCCHC13Q8WW36 166 aaKnown RBP2.1□□□□□ -2.07
NUP88-208ENST00000574087 SMIM2Q9BVW6 85 aa2.1□□□□□ -2.07
NUP88-208ENST00000574087 PRR14LQ5THK1 2151 aa2.1□□□□□ -2.07
NUP88-208ENST00000574087 CEP192Q8TEP8 1941 aa2.09□□□□□ -2.07
NUP88-208ENST00000574087 IGHV3-64A0A075B6Q5 118 aa2.09□□□□□ -2.07
NUP88-208ENST00000574087 TRBV10-1A0A0K0K1A3 114 aa2.09□□□□□ -2.07
NUP88-208ENST00000574087 A0A1B0GU33 70 aa2.09□□□□□ -2.07
NUP88-208ENST00000574087 JMJD7-PLA2G4BH0Y9G9 81 aa2.09□□□□□ -2.07
NUP88-208ENST00000574087 H0YGX0 51 aa2.09□□□□□ -2.07
NUP88-208ENST00000574087 CD52P31358 61 aa2.09□□□□□ -2.07
NUP88-208ENST00000574087 ELOF1P60002 83 aaKnown RBP2.09□□□□□ -2.07
NUP88-208ENST00000574087 KRTAP12-3P60328 96 aa2.09□□□□□ -2.07
NUP88-208ENST00000574087 CSAG1Q6PB30 78 aa2.09□□□□□ -2.07
NUP88-208ENST00000574087 Q6ZS52 159 aa2.09□□□□□ -2.07
NUP88-208ENST00000574087 UBL5Q9BZL1 73 aa2.09□□□□□ -2.07
NUP88-208ENST00000574087 PLAC8Q9NZF1 115 aa2.09□□□□□ -2.07
NUP88-208ENST00000574087 LENEPQ9Y5L5 61 aa2.09□□□□□ -2.07
NUP88-208ENST00000574087 SNURFQ9Y675 71 aa2.09□□□□□ -2.07
NUP88-208ENST00000574087 FREM3P0C091 2139 aa2.09□□□□□ -2.08
NUP88-208ENST00000574087 KIAA0100Q14667 2235 aaKnown RBP2.09□□□□□ -2.08
NUP88-208ENST00000574087 SPTBP11277 2137 aa2.08□□□□□ -2.08
NUP88-208ENST00000574087 TNRC6BQ9UPQ9 1833 aaKnown RBP2.08□□□□□ -2.08
NUP88-208ENST00000574087 A0A087WVE0 104 aa2.08□□□□□ -2.08
NUP88-208ENST00000574087 IGIPA6NJ69 53 aa2.08□□□□□ -2.08
NUP88-208ENST00000574087 M0R1W7 72 aa2.08□□□□□ -2.08
NUP88-208ENST00000574087 IGLV6-57P01721 117 aa2.08□□□□□ -2.08
NUP88-208ENST00000574087 C1orf137Q5JT78 98 aa2.08□□□□□ -2.08
NUP88-208ENST00000574087 KRTAP12-4P60329 112 aa2.07□□□□□ -2.08
NUP88-208ENST00000574087 CNBPP62633 177 aaKnown RBP2.07□□□□□ -2.08
NUP88-208ENST00000574087 MYO7BQ6PIF6 2116 aa2.07□□□□□ -2.08
NUP88-208ENST00000574087 ZGRF1Q86YA3 2104 aa2.07□□□□□ -2.08
NUP88-208ENST00000574087 TMEM167AQ8TBQ9 72 aa2.07□□□□□ -2.08
NUP88-208ENST00000574087 OBSCN-AS1Q96MR7 158 aa2.07□□□□□ -2.08
NUP88-208ENST00000574087 AMELXQ99217 191 aa2.07□□□□□ -2.08
NUP88-208ENST00000574087 Q9BRP9 147 aa2.07□□□□□ -2.08
NUP88-208ENST00000574087 LINC00846Q9NV44 126 aa2.07□□□□□ -2.08
NUP88-208ENST00000574087 MINOS1-NBL1R4GNA1 71 aa2.07□□□□□ -2.08
NUP88-208ENST00000574087 PI4KAP42356 2102 aa2.06□□□□□ -2.08
NUP88-208ENST00000574087 TRBV6-5A0A0K0K1A5 114 aa2.06□□□□□ -2.08
NUP88-208ENST00000574087 DEFB108AA8MXU0 73 aa2.06□□□□□ -2.08
NUP88-208ENST00000574087 HRES1P13985 223 aa2.06□□□□□ -2.08
NUP88-208ENST00000574087 C9orf163Q8N9P6 203 aa2.06□□□□□ -2.08
NUP88-208ENST00000574087 DMAC1Q96GE9 116 aa2.06□□□□□ -2.08
NUP88-208ENST00000574087 PRR15LQ9BU68 103 aa2.06□□□□□ -2.08
NUP88-208ENST00000574087 MRPL36Q9P0J6 103 aaKnown RBP2.06□□□□□ -2.08
NUP88-208ENST00000574087 TET1Q8NFU7 2136 aa2.06□□□□□ -2.08
NUP88-208ENST00000574087 LCE6AA0A183 80 aa2.05□□□□□ -2.08
NUP88-208ENST00000574087 H3BRN7 92 aa2.05□□□□□ -2.08
NUP88-208ENST00000574087 PDE6GP18545 87 aa2.05□□□□□ -2.08
NUP88-208ENST00000574087 KRTAP25-1Q3LHN0 102 aa2.05□□□□□ -2.08
NUP88-208ENST00000574087 RPL39P5Q59GN2 51 aa2.05□□□□□ -2.08
NUP88-208ENST00000574087 FAM74A4Q5TZK3 123 aa2.05□□□□□ -2.08
NUP88-208ENST00000574087 HCP5Q6MZN7 132 aa2.05□□□□□ -2.08
NUP88-208ENST00000574087 ENHOQ6UWT2 76 aa2.05□□□□□ -2.08
NUP88-208ENST00000574087 ORMDL1Q9P0S3 153 aa2.05□□□□□ -2.08
NUP88-208ENST00000574087 LINC01558Q9Y6Z2 57 aa2.05□□□□□ -2.08
NUP88-208ENST00000574087 MED12Q93074 2177 aa2.05□□□□□ -2.08
NUP88-208ENST00000574087 TRAV21A0A0B4J279 112 aa2.04□□□□□ -2.08
Retrieved 100 of 20,778 RNA–protein pairs in 44.7 ms