RNA–Protein interactions for RNA: ENST00000567271.1

NME3-210, Transcript of NME/NM23 nucleoside diphosphate kinase 3, humanhuman

TSL 2

Gene NME3, Length 752 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NME3-210ENST00000567271 MYCBP2O75592 4640 aa13.64□□□□□ -0.23
NME3-210ENST00000567271 C6orf226Q5I0X4 101 aa13.64□□□□□ -0.23
NME3-210ENST00000567271 TRBV30A0A0K0K1B3 111 aa13.63□□□□□ -0.23
NME3-210ENST00000567271 SMIM1B2RUZ4 78 aa13.63□□□□□ -0.23
NME3-210ENST00000567271 IGLC3P0DOY3 106 aa13.63□□□□□ -0.23
NME3-210ENST00000567271 RPL37AP61513 92 aaKnown RBP13.63□□□□□ -0.23
NME3-210ENST00000567271 RPL18AQ02543 176 aaKnown RBP13.63□□□□□ -0.23
NME3-210ENST00000567271 TLX1NBP0CAT3 122 aa13.62□□□□□ -0.23
NME3-210ENST00000567271 CKS1BP61024 79 aa13.62□□□□□ -0.23
NME3-210ENST00000567271 PKHD1L1Q86WI1 4243 aa13.62□□□□□ -0.23
NME3-210ENST00000567271 HSBP1O75506 76 aa13.61□□□□□ -0.23
NME3-210ENST00000567271 Q6ZRP5 223 aa13.6□□□□□ -0.23
NME3-210ENST00000567271 H3BRM9 83 aa13.59□□□□□ -0.23
NME3-210ENST00000567271 SPINK8P0C7L1 97 aa13.59□□□□□ -0.23
NME3-210ENST00000567271 LINC00310P59036 64 aa13.59□□□□□ -0.23
NME3-210ENST00000567271 FAM19A2Q8N3H0 131 aa13.59□□□□□ -0.23
NME3-210ENST00000567271 A0A1W2PNN7 141 aa13.58□□□□□ -0.24
NME3-210ENST00000567271 IFI27L1Q96BM0 104 aa13.58□□□□□ -0.24
NME3-210ENST00000567271 FLG2Q5D862 2391 aaPredicted RBP13.58□□□□□ -0.24
NME3-210ENST00000567271 SERF1AO75920 110 aa13.57□□□□□ -0.24
NME3-210ENST00000567271 C9orf116Q5BN46 136 aaPredicted RBP13.57□□□□□ -0.24
NME3-210ENST00000567271 COX7B2Q8TF08 81 aa13.57□□□□□ -0.24
NME3-210ENST00000567271 C7orf33Q8WU49 177 aa13.57□□□□□ -0.24
NME3-210ENST00000567271 NDUFC2-KCTD14E9PQ53 114 aa13.56□□□□□ -0.24
NME3-210ENST00000567271 ZNF22P17026 224 aaPredicted RBP13.56□□□□□ -0.24
NME3-210ENST00000567271 TRAV12-1A0A0B4J245 112 aa13.55□□□□□ -0.24
NME3-210ENST00000567271 F8VRH5 84 aa13.55□□□□□ -0.24
NME3-210ENST00000567271 CXCL5P42830 114 aa13.55□□□□□ -0.24
NME3-210ENST00000567271 CHTOPQ9Y3Y2 248 aaKnown RBP13.55□□□□□ -0.24
NME3-210ENST00000567271 C11orf86A6NJI1 115 aa13.54□□□□□ -0.24
NME3-210ENST00000567271 NUPR1O60356 82 aa13.54□□□□□ -0.24
NME3-210ENST00000567271 GAGE2EQ4V326 116 aa13.54□□□□□ -0.24
NME3-210ENST00000567271 GAGE2DQ9UEU5 116 aa13.54□□□□□ -0.24
NME3-210ENST00000567271 FAT3Q8TDW7 4589 aa13.53□□□□□ -0.24
NME3-210ENST00000567271 IGLV5-39A0A0G2JS06 123 aa13.53□□□□□ -0.24
NME3-210ENST00000567271 LEPROTL1O95214 131 aa13.51□□□□□ -0.25
NME3-210ENST00000567271 LRP1Q07954 4544 aaKnown RBP13.5□□□□□ -0.25
NME3-210ENST00000567271 FAM168BA1KXE4 195 aa13.49□□□□□ -0.25
NME3-210ENST00000567271 HIST1H2BKO60814 126 aa13.49□□□□□ -0.25
NME3-210ENST00000567271 HIST1H2BJP06899 126 aa13.49□□□□□ -0.25
NME3-210ENST00000567271 HIST1H2BOP23527 126 aa13.49□□□□□ -0.25
NME3-210ENST00000567271 HIST1H2BBP33778 126 aa13.49□□□□□ -0.25
NME3-210ENST00000567271 HNRNPA3P51991 378 aaKnown RBP13.49□□□□□ -0.25
NME3-210ENST00000567271 HIST1H2BDP58876 126 aa13.49□□□□□ -0.25
NME3-210ENST00000567271 HIST1H2BCP62807 126 aa13.49□□□□□ -0.25
NME3-210ENST00000567271 HIST2H2BEQ16778 126 aa13.49□□□□□ -0.25
NME3-210ENST00000567271 HIST2H2BFQ5QNW6 126 aaPredicted RBP13.49□□□□□ -0.25
NME3-210ENST00000567271 TMEM170BQ5T4T1 132 aa13.49□□□□□ -0.25
NME3-210ENST00000567271 HIST1H2BHQ93079 126 aa13.49□□□□□ -0.25
NME3-210ENST00000567271 HIST1H2BNQ99877 126 aa13.49□□□□□ -0.25
NME3-210ENST00000567271 HIST1H2BMQ99879 126 aa13.49□□□□□ -0.25
NME3-210ENST00000567271 C9orf129Q5T035 196 aaKnown RBP13.48□□□□□ -0.25
NME3-210ENST00000567271 HERC1Q15751 4861 aa13.46□□□□□ -0.25
NME3-210ENST00000567271 PRR3P79522 188 aaKnown RBP13.46□□□□□ -0.25
NME3-210ENST00000567271 PHF5AQ7RTV0 110 aaKnown RBP13.46□□□□□ -0.25
NME3-210ENST00000567271 HSPB8Q9UJY1 196 aa13.46□□□□□ -0.25
NME3-210ENST00000567271 FABP4P15090 132 aa13.45□□□□□ -0.26
NME3-210ENST00000567271 ODF1Q14990 250 aa13.45□□□□□ -0.26
NME3-210ENST00000567271 KRTAP7-1Q8IUC3 87 aa13.45□□□□□ -0.26
NME3-210ENST00000567271 H0Y8G0 127 aa13.44□□□□□ -0.26
NME3-210ENST00000567271 FAM19A5Q7Z5A7 132 aaPredicted RBP13.44□□□□□ -0.26
NME3-210ENST00000567271 TMEM223A0PJW6 202 aa13.43□□□□□ -0.26
NME3-210ENST00000567271 XAGE1AQ9HD64 81 aa13.42□□□□□ -0.26
NME3-210ENST00000567271 S100A1P23297 94 aa13.41□□□□□ -0.26
NME3-210ENST00000567271 KRTAP29-1A8MX34 341 aaPredicted RBP13.4□□□□□ -0.26
NME3-210ENST00000567271 DMBT1Q9UGM3 2413 aaPredicted RBP13.39□□□□□ -0.27
NME3-210ENST00000567271 M0QXV9 152 aa13.38□□□□□ -0.27
NME3-210ENST00000567271 SERTAD4-AS1Q5TG53 156 aa13.38□□□□□ -0.27
NME3-210ENST00000567271 PSORS1C2Q9UIG4 136 aa13.38□□□□□ -0.27
NME3-210ENST00000567271 ATP6V1G1O75348 118 aa13.37□□□□□ -0.27
NME3-210ENST00000567271 SFTA2Q6UW10 78 aa13.37□□□□□ -0.27
NME3-210ENST00000567271 ZNF625Q96I27 306 aaPredicted RBP13.37□□□□□ -0.27
NME3-210ENST00000567271 KRTAP11-1Q8IUC1 163 aa13.36□□□□□ -0.27
NME3-210ENST00000567271 MAP1LC3CQ9BXW4 147 aa13.36□□□□□ -0.27
NME3-210ENST00000567271 OXTP01178 125 aa13.35□□□□□ -0.27
NME3-210ENST00000567271 PLNP26678 52 aa13.35□□□□□ -0.27
NME3-210ENST00000567271 PFN2P35080 140 aa13.35□□□□□ -0.27
NME3-210ENST00000567271 ERG28Q9UKR5 140 aa13.35□□□□□ -0.27
NME3-210ENST00000567271 DPM2O94777 84 aa13.34□□□□□ -0.27
NME3-210ENST00000567271 COX17Q14061 63 aa13.34□□□□□ -0.27
NME3-210ENST00000567271 COA6Q5JTJ3 125 aaKnown RBP13.34□□□□□ -0.27
NME3-210ENST00000567271 PMCHL2Q9BQD1 86 aa13.34□□□□□ -0.27
NME3-210ENST00000567271 C22orf24Q9Y442 160 aa13.34□□□□□ -0.27
NME3-210ENST00000567271 J3QL48 77 aa13.33□□□□□ -0.28
NME3-210ENST00000567271 SRSF9Q13242 221 aaKnown RBP eCLIP13.32□□□□□ -0.28
NME3-210ENST00000567271 PLA2G2DQ9UNK4 145 aa13.32□□□□□ -0.28
NME3-210ENST00000567271 IGKCP01834 107 aa13.31□□□□□ -0.28
NME3-210ENST00000567271 UBE2BP63146 152 aa13.31□□□□□ -0.28
NME3-210ENST00000567271 C1orf137Q5JT78 98 aa13.31□□□□□ -0.28
NME3-210ENST00000567271 SPINK6Q6UWN8 80 aa13.31□□□□□ -0.28
NME3-210ENST00000567271 SYS1-DBNDD2H3BUS1 97 aa13.29□□□□□ -0.28
NME3-210ENST00000567271 LBHQ53QV2 105 aaPredicted RBP13.29□□□□□ -0.28
NME3-210ENST00000567271 SND1-IT1Q9HBX3 110 aa13.29□□□□□ -0.28
NME3-210ENST00000567271 TP73-AS1Q9UF72 201 aa13.29□□□□□ -0.28
NME3-210ENST00000567271 MRPL55Q7Z7F7 128 aaKnown RBP13.27□□□□□ -0.29
NME3-210ENST00000567271 IGLV5-37A0A075B6J1 123 aa13.26□□□□□ -0.29
NME3-210ENST00000567271 LEPROTO15243 131 aa13.26□□□□□ -0.29
NME3-210ENST00000567271 NDUFA12Q9UI09 145 aa13.26□□□□□ -0.29
NME3-210ENST00000567271 IGLV7-43P04211 117 aa13.25□□□□□ -0.29
NME3-210ENST00000567271 LINC00158P58513 81 aa13.25□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 750.7 ms