RNA–Protein interactions for RNA: ENST00000567271.1

NME3-210, Transcript of NME/NM23 nucleoside diphosphate kinase 3, human

TSL 2

Gene NME3, Length 752 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
NME3-210	ENST00000567271	MYCBP2	O75592	4640 aa		13.64	□□□□□ -0.23
NME3-210	ENST00000567271	C6orf226	Q5I0X4	101 aa		13.64	□□□□□ -0.23
NME3-210	ENST00000567271	TRBV30	A0A0K0K1B3	111 aa		13.63	□□□□□ -0.23
NME3-210	ENST00000567271	SMIM1	B2RUZ4	78 aa		13.63	□□□□□ -0.23
NME3-210	ENST00000567271	IGLC3	P0DOY3	106 aa		13.63	□□□□□ -0.23
NME3-210	ENST00000567271	RPL37A	P61513	92 aa	Known RBP	13.63	□□□□□ -0.23
NME3-210	ENST00000567271	RPL18A	Q02543	176 aa	Known RBP	13.63	□□□□□ -0.23
NME3-210	ENST00000567271	TLX1NB	P0CAT3	122 aa		13.62	□□□□□ -0.23
NME3-210	ENST00000567271	CKS1B	P61024	79 aa		13.62	□□□□□ -0.23
NME3-210	ENST00000567271	PKHD1L1	Q86WI1	4243 aa		13.62	□□□□□ -0.23
NME3-210	ENST00000567271	HSBP1	O75506	76 aa		13.61	□□□□□ -0.23
NME3-210	ENST00000567271		Q6ZRP5	223 aa		13.6	□□□□□ -0.23
NME3-210	ENST00000567271		H3BRM9	83 aa		13.59	□□□□□ -0.23
NME3-210	ENST00000567271	SPINK8	P0C7L1	97 aa		13.59	□□□□□ -0.23
NME3-210	ENST00000567271	LINC00310	P59036	64 aa		13.59	□□□□□ -0.23
NME3-210	ENST00000567271	FAM19A2	Q8N3H0	131 aa		13.59	□□□□□ -0.23
NME3-210	ENST00000567271		A0A1W2PNN7	141 aa		13.58	□□□□□ -0.24
NME3-210	ENST00000567271	IFI27L1	Q96BM0	104 aa		13.58	□□□□□ -0.24
NME3-210	ENST00000567271	FLG2	Q5D862	2391 aa	Predicted RBP	13.58	□□□□□ -0.24
NME3-210	ENST00000567271	SERF1A	O75920	110 aa		13.57	□□□□□ -0.24
NME3-210	ENST00000567271	C9orf116	Q5BN46	136 aa	Predicted RBP	13.57	□□□□□ -0.24
NME3-210	ENST00000567271	COX7B2	Q8TF08	81 aa		13.57	□□□□□ -0.24
NME3-210	ENST00000567271	C7orf33	Q8WU49	177 aa		13.57	□□□□□ -0.24
NME3-210	ENST00000567271	NDUFC2-KCTD14	E9PQ53	114 aa		13.56	□□□□□ -0.24
NME3-210	ENST00000567271	ZNF22	P17026	224 aa	Predicted RBP	13.56	□□□□□ -0.24
NME3-210	ENST00000567271	TRAV12-1	A0A0B4J245	112 aa		13.55	□□□□□ -0.24
NME3-210	ENST00000567271		F8VRH5	84 aa		13.55	□□□□□ -0.24
NME3-210	ENST00000567271	CXCL5	P42830	114 aa		13.55	□□□□□ -0.24
NME3-210	ENST00000567271	CHTOP	Q9Y3Y2	248 aa	Known RBP	13.55	□□□□□ -0.24
NME3-210	ENST00000567271	C11orf86	A6NJI1	115 aa		13.54	□□□□□ -0.24
NME3-210	ENST00000567271	NUPR1	O60356	82 aa		13.54	□□□□□ -0.24
NME3-210	ENST00000567271	GAGE2E	Q4V326	116 aa		13.54	□□□□□ -0.24
NME3-210	ENST00000567271	GAGE2D	Q9UEU5	116 aa		13.54	□□□□□ -0.24
NME3-210	ENST00000567271	FAT3	Q8TDW7	4589 aa		13.53	□□□□□ -0.24
NME3-210	ENST00000567271	IGLV5-39	A0A0G2JS06	123 aa		13.53	□□□□□ -0.24
NME3-210	ENST00000567271	LEPROTL1	O95214	131 aa		13.51	□□□□□ -0.25
NME3-210	ENST00000567271	LRP1	Q07954	4544 aa	Known RBP	13.5	□□□□□ -0.25
NME3-210	ENST00000567271	FAM168B	A1KXE4	195 aa		13.49	□□□□□ -0.25
NME3-210	ENST00000567271	HIST1H2BK	O60814	126 aa		13.49	□□□□□ -0.25
NME3-210	ENST00000567271	HIST1H2BJ	P06899	126 aa		13.49	□□□□□ -0.25
NME3-210	ENST00000567271	HIST1H2BO	P23527	126 aa		13.49	□□□□□ -0.25
NME3-210	ENST00000567271	HIST1H2BB	P33778	126 aa		13.49	□□□□□ -0.25
NME3-210	ENST00000567271	HNRNPA3	P51991	378 aa	Known RBP	13.49	□□□□□ -0.25
NME3-210	ENST00000567271	HIST1H2BD	P58876	126 aa		13.49	□□□□□ -0.25
NME3-210	ENST00000567271	HIST1H2BC	P62807	126 aa		13.49	□□□□□ -0.25
NME3-210	ENST00000567271	HIST2H2BE	Q16778	126 aa		13.49	□□□□□ -0.25
NME3-210	ENST00000567271	HIST2H2BF	Q5QNW6	126 aa	Predicted RBP	13.49	□□□□□ -0.25
NME3-210	ENST00000567271	TMEM170B	Q5T4T1	132 aa		13.49	□□□□□ -0.25
NME3-210	ENST00000567271	HIST1H2BH	Q93079	126 aa		13.49	□□□□□ -0.25
NME3-210	ENST00000567271	HIST1H2BN	Q99877	126 aa		13.49	□□□□□ -0.25
NME3-210	ENST00000567271	HIST1H2BM	Q99879	126 aa		13.49	□□□□□ -0.25
NME3-210	ENST00000567271	C9orf129	Q5T035	196 aa	Known RBP	13.48	□□□□□ -0.25
NME3-210	ENST00000567271	HERC1	Q15751	4861 aa		13.46	□□□□□ -0.25
NME3-210	ENST00000567271	PRR3	P79522	188 aa	Known RBP	13.46	□□□□□ -0.25
NME3-210	ENST00000567271	PHF5A	Q7RTV0	110 aa	Known RBP	13.46	□□□□□ -0.25
NME3-210	ENST00000567271	HSPB8	Q9UJY1	196 aa		13.46	□□□□□ -0.25
NME3-210	ENST00000567271	FABP4	P15090	132 aa		13.45	□□□□□ -0.26
NME3-210	ENST00000567271	ODF1	Q14990	250 aa		13.45	□□□□□ -0.26
NME3-210	ENST00000567271	KRTAP7-1	Q8IUC3	87 aa		13.45	□□□□□ -0.26
NME3-210	ENST00000567271		H0Y8G0	127 aa		13.44	□□□□□ -0.26
NME3-210	ENST00000567271	FAM19A5	Q7Z5A7	132 aa	Predicted RBP	13.44	□□□□□ -0.26
NME3-210	ENST00000567271	TMEM223	A0PJW6	202 aa		13.43	□□□□□ -0.26
NME3-210	ENST00000567271	XAGE1A	Q9HD64	81 aa		13.42	□□□□□ -0.26
NME3-210	ENST00000567271	S100A1	P23297	94 aa		13.41	□□□□□ -0.26
NME3-210	ENST00000567271	KRTAP29-1	A8MX34	341 aa	Predicted RBP	13.4	□□□□□ -0.26
NME3-210	ENST00000567271	DMBT1	Q9UGM3	2413 aa	Predicted RBP	13.39	□□□□□ -0.27
NME3-210	ENST00000567271		M0QXV9	152 aa		13.38	□□□□□ -0.27
NME3-210	ENST00000567271	SERTAD4-AS1	Q5TG53	156 aa		13.38	□□□□□ -0.27
NME3-210	ENST00000567271	PSORS1C2	Q9UIG4	136 aa		13.38	□□□□□ -0.27
NME3-210	ENST00000567271	ATP6V1G1	O75348	118 aa		13.37	□□□□□ -0.27
NME3-210	ENST00000567271	SFTA2	Q6UW10	78 aa		13.37	□□□□□ -0.27
NME3-210	ENST00000567271	ZNF625	Q96I27	306 aa	Predicted RBP	13.37	□□□□□ -0.27
NME3-210	ENST00000567271	KRTAP11-1	Q8IUC1	163 aa		13.36	□□□□□ -0.27
NME3-210	ENST00000567271	MAP1LC3C	Q9BXW4	147 aa		13.36	□□□□□ -0.27
NME3-210	ENST00000567271	OXT	P01178	125 aa		13.35	□□□□□ -0.27
NME3-210	ENST00000567271	PLN	P26678	52 aa		13.35	□□□□□ -0.27
NME3-210	ENST00000567271	PFN2	P35080	140 aa		13.35	□□□□□ -0.27
NME3-210	ENST00000567271	ERG28	Q9UKR5	140 aa		13.35	□□□□□ -0.27
NME3-210	ENST00000567271	DPM2	O94777	84 aa		13.34	□□□□□ -0.27
NME3-210	ENST00000567271	COX17	Q14061	63 aa		13.34	□□□□□ -0.27
NME3-210	ENST00000567271	COA6	Q5JTJ3	125 aa	Known RBP	13.34	□□□□□ -0.27
NME3-210	ENST00000567271	PMCHL2	Q9BQD1	86 aa		13.34	□□□□□ -0.27
NME3-210	ENST00000567271	C22orf24	Q9Y442	160 aa		13.34	□□□□□ -0.27
NME3-210	ENST00000567271		J3QL48	77 aa		13.33	□□□□□ -0.28
NME3-210	ENST00000567271	SRSF9	Q13242	221 aa	Known RBP eCLIP	13.32	□□□□□ -0.28
NME3-210	ENST00000567271	PLA2G2D	Q9UNK4	145 aa		13.32	□□□□□ -0.28
NME3-210	ENST00000567271	IGKC	P01834	107 aa		13.31	□□□□□ -0.28
NME3-210	ENST00000567271	UBE2B	P63146	152 aa		13.31	□□□□□ -0.28
NME3-210	ENST00000567271	C1orf137	Q5JT78	98 aa		13.31	□□□□□ -0.28
NME3-210	ENST00000567271	SPINK6	Q6UWN8	80 aa		13.31	□□□□□ -0.28
NME3-210	ENST00000567271	SYS1-DBNDD2	H3BUS1	97 aa		13.29	□□□□□ -0.28
NME3-210	ENST00000567271	LBH	Q53QV2	105 aa	Predicted RBP	13.29	□□□□□ -0.28
NME3-210	ENST00000567271	SND1-IT1	Q9HBX3	110 aa		13.29	□□□□□ -0.28
NME3-210	ENST00000567271	TP73-AS1	Q9UF72	201 aa		13.29	□□□□□ -0.28
NME3-210	ENST00000567271	MRPL55	Q7Z7F7	128 aa	Known RBP	13.27	□□□□□ -0.29
NME3-210	ENST00000567271	IGLV5-37	A0A075B6J1	123 aa		13.26	□□□□□ -0.29
NME3-210	ENST00000567271	LEPROT	O15243	131 aa		13.26	□□□□□ -0.29
NME3-210	ENST00000567271	NDUFA12	Q9UI09	145 aa		13.26	□□□□□ -0.29
NME3-210	ENST00000567271	IGLV7-43	P04211	117 aa		13.25	□□□□□ -0.29
NME3-210	ENST00000567271	LINC00158	P58513	81 aa		13.25	□□□□□ -0.29

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