RNA–Protein interactions for RNA: ENST00000566040.1

CLN3-220, Transcript of CLN3, battenin, humanhuman

TSL 4

Gene CLN3, Length 544 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-220ENST00000566040 KRTAP11-1Q8IUC1 163 aa6.15□□□□□ -1.42
CLN3-220ENST00000566040 Q8IZM0 81 aa6.15□□□□□ -1.42
CLN3-220ENST00000566040 LOC107984640A0A0U1RRK4 108 aa6.14□□□□□ -1.43
CLN3-220ENST00000566040 FAM168BA1KXE4 195 aa6.14□□□□□ -1.43
CLN3-220ENST00000566040 F8WDY8 70 aa6.14□□□□□ -1.43
CLN3-220ENST00000566040 NDUFA1O15239 70 aa6.14□□□□□ -1.43
CLN3-220ENST00000566040 SPINK8P0C7L1 97 aa6.14□□□□□ -1.43
CLN3-220ENST00000566040 INAFM2P0DMQ5 153 aa6.14□□□□□ -1.43
CLN3-220ENST00000566040 PAPPA-AS1Q5QFB9 102 aa6.14□□□□□ -1.43
CLN3-220ENST00000566040 STPG4Q8N801 248 aa6.14□□□□□ -1.43
CLN3-220ENST00000566040 FAM229AH3BQW9 127 aa6.13□□□□□ -1.43
CLN3-220ENST00000566040 HIST1H2BKO60814 126 aa6.13□□□□□ -1.43
CLN3-220ENST00000566040 HIST1H2BJP06899 126 aa6.13□□□□□ -1.43
CLN3-220ENST00000566040 HIST1H2BOP23527 126 aa6.13□□□□□ -1.43
CLN3-220ENST00000566040 HIST1H2BBP33778 126 aa6.13□□□□□ -1.43
CLN3-220ENST00000566040 HIST1H2BDP58876 126 aa6.13□□□□□ -1.43
CLN3-220ENST00000566040 RAB5BP61020 215 aa6.13□□□□□ -1.43
CLN3-220ENST00000566040 HIST1H2BCP62807 126 aa6.13□□□□□ -1.43
CLN3-220ENST00000566040 HIST2H2BEQ16778 126 aa6.13□□□□□ -1.43
CLN3-220ENST00000566040 HIST2H2BFQ5QNW6 126 aaPredicted RBP6.13□□□□□ -1.43
CLN3-220ENST00000566040 C9orf129Q5T035 196 aaKnown RBP6.13□□□□□ -1.43
CLN3-220ENST00000566040 LINC00469Q8N7U9 141 aa6.13□□□□□ -1.43
CLN3-220ENST00000566040 HIST1H2BHQ93079 126 aa6.13□□□□□ -1.43
CLN3-220ENST00000566040 HIST1H2BNQ99877 126 aa6.13□□□□□ -1.43
CLN3-220ENST00000566040 HIST1H2BMQ99879 126 aa6.13□□□□□ -1.43
CLN3-220ENST00000566040 TRBV30A0A0K0K1B3 111 aa6.12□□□□□ -1.43
CLN3-220ENST00000566040 SEC11AP67812 179 aa6.12□□□□□ -1.43
CLN3-220ENST00000566040 GAGE2BQ13066 116 aa6.12□□□□□ -1.43
CLN3-220ENST00000566040 GEMIN7Q9H840 131 aaKnown RBP6.12□□□□□ -1.43
CLN3-220ENST00000566040 TRAV12-1A0A0B4J245 112 aa6.11□□□□□ -1.43
CLN3-220ENST00000566040 ATP5LO75964 103 aa6.11□□□□□ -1.43
CLN3-220ENST00000566040 RPL37AP61513 92 aaKnown RBP6.11□□□□□ -1.43
CLN3-220ENST00000566040 RPL18AQ02543 176 aaKnown RBP6.11□□□□□ -1.43
CLN3-220ENST00000566040 ODF1Q14990 250 aa6.11□□□□□ -1.43
CLN3-220ENST00000566040 IFI27L1Q96BM0 104 aa6.11□□□□□ -1.43
CLN3-220ENST00000566040 TOMM7Q9P0U1 55 aa6.11□□□□□ -1.43
CLN3-220ENST00000566040 ATP6V1G1O75348 118 aa6.1□□□□□ -1.43
CLN3-220ENST00000566040 PLA2G1BP04054 148 aaKnown RBP6.1□□□□□ -1.43
CLN3-220ENST00000566040 PRR3P79522 188 aaKnown RBP6.1□□□□□ -1.43
CLN3-220ENST00000566040 BAGE3Q86Y29 109 aa6.1□□□□□ -1.43
CLN3-220ENST00000566040 COX7B2Q8TF08 81 aa6.1□□□□□ -1.43
CLN3-220ENST00000566040 NDUFC2-KCTD14E9PQ53 114 aa6.09□□□□□ -1.43
CLN3-220ENST00000566040 F8VRH5 84 aa6.09□□□□□ -1.43
CLN3-220ENST00000566040 HSBP1O75506 76 aa6.09□□□□□ -1.43
CLN3-220ENST00000566040 SERTAD4-AS1Q5TG53 156 aa6.09□□□□□ -1.43
CLN3-220ENST00000566040 PHF5AQ7RTV0 110 aaKnown RBP6.09□□□□□ -1.43
CLN3-220ENST00000566040 CHTOPQ9Y3Y2 248 aaKnown RBP6.09□□□□□ -1.43
CLN3-220ENST00000566040 TMEM223A0PJW6 202 aa6.08□□□□□ -1.44
CLN3-220ENST00000566040 NDUFA6P56556 154 aa6.08□□□□□ -1.44
CLN3-220ENST00000566040 TSPEAR-AS2P59090 65 aa6.08□□□□□ -1.44
CLN3-220ENST00000566040 COA6Q5JTJ3 125 aaKnown RBP6.08□□□□□ -1.44
CLN3-220ENST00000566040 Q8NDZ9 215 aa6.08□□□□□ -1.44
CLN3-220ENST00000566040 ZNF625Q96I27 306 aaPredicted RBP6.08□□□□□ -1.44
CLN3-220ENST00000566040 LINC00474Q9P2X8 69 aa6.08□□□□□ -1.44
CLN3-220ENST00000566040 GAGE2EQ4V326 116 aa6.07□□□□□ -1.44
CLN3-220ENST00000566040 C6orf226Q5I0X4 101 aa6.07□□□□□ -1.44
CLN3-220ENST00000566040 PACRGQ96M98 296 aaPredicted RBP6.07□□□□□ -1.44
CLN3-220ENST00000566040 GAGE2DQ9UEU5 116 aa6.07□□□□□ -1.44
CLN3-220ENST00000566040 LEPROTL1O95214 131 aa6.06□□□□□ -1.44
CLN3-220ENST00000566040 PRSS2P07478 247 aa6.06□□□□□ -1.44
CLN3-220ENST00000566040 MT1HL1P0DM35 61 aa6.06□□□□□ -1.44
CLN3-220ENST00000566040 CXCL5P42830 114 aa6.06□□□□□ -1.44
CLN3-220ENST00000566040 FAM19A5Q7Z5A7 132 aaPredicted RBP6.06□□□□□ -1.44
CLN3-220ENST00000566040 XAGE1AQ9HD64 81 aa6.06□□□□□ -1.44
CLN3-220ENST00000566040 PKIGQ9Y2B9 76 aa6.06□□□□□ -1.44
CLN3-220ENST00000566040 KRTAP29-1A8MX34 341 aaPredicted RBP6.05□□□□□ -1.44
CLN3-220ENST00000566040 FABP4P15090 132 aa6.05□□□□□ -1.44
CLN3-220ENST00000566040 CKS1BP61024 79 aa6.05□□□□□ -1.44
CLN3-220ENST00000566040 SRSF9Q13242 221 aaKnown RBP eCLIP6.05□□□□□ -1.44
CLN3-220ENST00000566040 PMCHL2Q9BQD1 86 aa6.05□□□□□ -1.44
CLN3-220ENST00000566040 PSORS1C2Q9UIG4 136 aa6.05□□□□□ -1.44
CLN3-220ENST00000566040 H3BRM9 83 aa6.04□□□□□ -1.44
CLN3-220ENST00000566040 TMEM170BQ5T4T1 132 aa6.04□□□□□ -1.44
CLN3-220ENST00000566040 DPH3Q96FX2 82 aa6.04□□□□□ -1.44
CLN3-220ENST00000566040 H0Y8G0 127 aa6.02□□□□□ -1.45
CLN3-220ENST00000566040 M0QXV9 152 aa6.02□□□□□ -1.45
CLN3-220ENST00000566040 C7orf33Q8WU49 177 aa6.02□□□□□ -1.45
CLN3-220ENST00000566040 IGLV5-37A0A075B6J1 123 aa6.01□□□□□ -1.45
CLN3-220ENST00000566040 S100A1P23297 94 aa6.01□□□□□ -1.45
CLN3-220ENST00000566040 LINC01545Q5VT33 79 aa6.01□□□□□ -1.45
CLN3-220ENST00000566040 ERG28Q9UKR5 140 aa6.01□□□□□ -1.45
CLN3-220ENST00000566040 PLA2G2DQ9UNK4 145 aa6.01□□□□□ -1.45
CLN3-220ENST00000566040 HMCN2Q8NDA2 5059 aa6□□□□□ -1.45
CLN3-220ENST00000566040 SYS1-DBNDD2H3BUS1 97 aa6□□□□□ -1.45
CLN3-220ENST00000566040 C3orf79P0CE67 100 aa6□□□□□ -1.45
CLN3-220ENST00000566040 VPREB1P12018 145 aa6□□□□□ -1.45
CLN3-220ENST00000566040 SND1-IT1Q9HBX3 110 aa6□□□□□ -1.45
CLN3-220ENST00000566040 HSPB8Q9UJY1 196 aa6□□□□□ -1.45
CLN3-220ENST00000566040 C22orf24Q9Y442 160 aa6□□□□□ -1.45
CLN3-220ENST00000566040 DPM2O94777 84 aa5.99□□□□□ -1.45
CLN3-220ENST00000566040 PFN2P35080 140 aa5.99□□□□□ -1.45
CLN3-220ENST00000566040 IGKCP01834 107 aa5.98□□□□□ -1.45
CLN3-220ENST00000566040 PLNP26678 52 aa5.98□□□□□ -1.45
CLN3-220ENST00000566040 TP73-AS1Q9UF72 201 aa5.98□□□□□ -1.45
CLN3-220ENST00000566040 IGKV2D-26A0A0A0MRZ7 120 aa5.97□□□□□ -1.45
CLN3-220ENST00000566040 LEPROTO15243 131 aa5.97□□□□□ -1.45
CLN3-220ENST00000566040 EIF4EBP3O60516 100 aaPredicted RBP5.97□□□□□ -1.45
CLN3-220ENST00000566040 OXTP01178 125 aa5.97□□□□□ -1.45
CLN3-220ENST00000566040 IGLV7-43P04211 117 aa5.97□□□□□ -1.45
CLN3-220ENST00000566040 C1orf137Q5JT78 98 aa5.97□□□□□ -1.45
Retrieved 100 of 20,778 RNA–protein pairs in 35.1 ms