RNA–Protein interactions for RNA: ENST00000563842.5

CLK3-213, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 860 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-213ENST00000563842 C6orf48Q9UBA6 75 aa8.41□□□□□ -1.06
CLK3-213ENST00000563842 ATP5LO75964 103 aa8.4□□□□□ -1.06
CLK3-213ENST00000563842 OXTP01178 125 aa8.4□□□□□ -1.06
CLK3-213ENST00000563842 IGLV5-45A0A087WSX0 123 aa8.39□□□□□ -1.07
CLK3-213ENST00000563842 CXCL5P42830 114 aa8.39□□□□□ -1.07
CLK3-213ENST00000563842 C9orf116Q5BN46 136 aaPredicted RBP8.39□□□□□ -1.07
CLK3-213ENST00000563842 PDZD11Q5EBL8 140 aa8.39□□□□□ -1.07
CLK3-213ENST00000563842 C2orf82Q6UX34 121 aa8.39□□□□□ -1.07
CLK3-213ENST00000563842 SLC7A5P1Q8MH63 180 aa8.39□□□□□ -1.07
CLK3-213ENST00000563842 URB1-AS1Q96HZ7 61 aa8.39□□□□□ -1.07
CLK3-213ENST00000563842 A0A1W2PNN7 141 aa8.38□□□□□ -1.07
CLK3-213ENST00000563842 NDUFC2-KCTD14E9PQ53 114 aa8.38□□□□□ -1.07
CLK3-213ENST00000563842 H3BRM9 83 aa8.38□□□□□ -1.07
CLK3-213ENST00000563842 NDUFA6P56556 154 aa8.38□□□□□ -1.07
CLK3-213ENST00000563842 Q6ZRP5 223 aa8.38□□□□□ -1.07
CLK3-213ENST00000563842 CBLN2Q8IUK8 224 aa8.38□□□□□ -1.07
CLK3-213ENST00000563842 CHCHD1Q96BP2 118 aaKnown RBP8.38□□□□□ -1.07
CLK3-213ENST00000563842 MYCBP2O75592 4640 aa8.37□□□□□ -1.07
CLK3-213ENST00000563842 A0A096LNJ9 63 aa8.37□□□□□ -1.07
CLK3-213ENST00000563842 GAGE2EQ4V326 116 aa8.37□□□□□ -1.07
CLK3-213ENST00000563842 GAGE2DQ9UEU5 116 aa8.37□□□□□ -1.07
CLK3-213ENST00000563842 SMIM1B2RUZ4 78 aa8.36□□□□□ -1.07
CLK3-213ENST00000563842 F8VRH5 84 aa8.36□□□□□ -1.07
CLK3-213ENST00000563842 PRR3P79522 188 aaKnown RBP8.36□□□□□ -1.07
CLK3-213ENST00000563842 PMCHL1Q16048 86 aa8.36□□□□□ -1.07
CLK3-213ENST00000563842 COX7B2Q8TF08 81 aa8.36□□□□□ -1.07
CLK3-213ENST00000563842 IGLC3P0DOY3 106 aa8.35□□□□□ -1.07
CLK3-213ENST00000563842 HNRNPA3P51991 378 aaKnown RBP8.35□□□□□ -1.07
CLK3-213ENST00000563842 BAGE3Q86Y29 109 aa8.34□□□□□ -1.07
CLK3-213ENST00000563842 PKHD1L1Q86WI1 4243 aa8.34□□□□□ -1.07
CLK3-213ENST00000563842 SPINK8P0C7L1 97 aa8.33□□□□□ -1.08
CLK3-213ENST00000563842 HSBP1O75506 76 aa8.32□□□□□ -1.08
CLK3-213ENST00000563842 TRGC2P03986 189 aa8.32□□□□□ -1.08
CLK3-213ENST00000563842 PHF5AQ7RTV0 110 aaKnown RBP8.32□□□□□ -1.08
CLK3-213ENST00000563842 ZNF22P17026 224 aaPredicted RBP8.31□□□□□ -1.08
CLK3-213ENST00000563842 SPINK6Q6UWN8 80 aa8.31□□□□□ -1.08
CLK3-213ENST00000563842 FAM19A5Q7Z5A7 132 aaPredicted RBP8.31□□□□□ -1.08
CLK3-213ENST00000563842 IFI27L1Q96BM0 104 aa8.31□□□□□ -1.08
CLK3-213ENST00000563842 TRAV12-1A0A0B4J245 112 aa8.3□□□□□ -1.08
CLK3-213ENST00000563842 FAM168BA1KXE4 195 aa8.3□□□□□ -1.08
CLK3-213ENST00000563842 CHTOPQ9Y3Y2 248 aaKnown RBP8.3□□□□□ -1.08
CLK3-213ENST00000563842 IGLV5-39A0A0G2JS06 123 aa8.29□□□□□ -1.08
CLK3-213ENST00000563842 M0QXV9 152 aa8.29□□□□□ -1.08
CLK3-213ENST00000563842 C9orf129Q5T035 196 aaKnown RBP8.29□□□□□ -1.08
CLK3-213ENST00000563842 TMEM170BQ5T4T1 132 aa8.29□□□□□ -1.08
CLK3-213ENST00000563842 SFTA2Q6UW10 78 aa8.29□□□□□ -1.08
CLK3-213ENST00000563842 PSORS1C2Q9UIG4 136 aa8.29□□□□□ -1.08
CLK3-213ENST00000563842 COLCA2A8K830 154 aa8.28□□□□□ -1.08
CLK3-213ENST00000563842 UBE2BP63146 152 aa8.28□□□□□ -1.08
CLK3-213ENST00000563842 ODF1Q14990 250 aa8.28□□□□□ -1.08
CLK3-213ENST00000563842 REG3GQ6UW15 175 aa8.28□□□□□ -1.08
CLK3-213ENST00000563842 C11orf86A6NJI1 115 aa8.27□□□□□ -1.09
CLK3-213ENST00000563842 LBHQ53QV2 105 aaPredicted RBP8.27□□□□□ -1.09
CLK3-213ENST00000563842 C1orf137Q5JT78 98 aa8.27□□□□□ -1.09
CLK3-213ENST00000563842 LEPROTL1O95214 131 aa8.26□□□□□ -1.09
CLK3-213ENST00000563842 SRSF9Q13242 221 aaKnown RBP eCLIP8.26□□□□□ -1.09
CLK3-213ENST00000563842 FAM19A2Q8N3H0 131 aa8.26□□□□□ -1.09
CLK3-213ENST00000563842 XAGE1AQ9HD64 81 aa8.26□□□□□ -1.09
CLK3-213ENST00000563842 LRP1Q07954 4544 aaKnown RBP8.25□□□□□ -1.09
CLK3-213ENST00000563842 SERF1AO75920 110 aa8.25□□□□□ -1.09
CLK3-213ENST00000563842 FAT3Q8TDW7 4589 aa8.24□□□□□ -1.09
CLK3-213ENST00000563842 COX17Q14061 63 aa8.24□□□□□ -1.09
CLK3-213ENST00000563842 SERTAD4-AS1Q5TG53 156 aa8.24□□□□□ -1.09
CLK3-213ENST00000563842 KRTAP7-1Q8IUC3 87 aa8.24□□□□□ -1.09
CLK3-213ENST00000563842 TP73-AS1Q9UF72 201 aa8.24□□□□□ -1.09
CLK3-213ENST00000563842 HSPB8Q9UJY1 196 aa8.24□□□□□ -1.09
CLK3-213ENST00000563842 PLA2G2DQ9UNK4 145 aa8.24□□□□□ -1.09
CLK3-213ENST00000563842 C22orf24Q9Y442 160 aa8.24□□□□□ -1.09
CLK3-213ENST00000563842 IGLV7-43P04211 117 aa8.23□□□□□ -1.09
CLK3-213ENST00000563842 TMEM223A0PJW6 202 aa8.22□□□□□ -1.09
CLK3-213ENST00000563842 PFN2P35080 140 aa8.22□□□□□ -1.09
CLK3-213ENST00000563842 LINC01600Q96MT4 127 aa8.22□□□□□ -1.09
CLK3-213ENST00000563842 ERG28Q9UKR5 140 aa8.22□□□□□ -1.09
CLK3-213ENST00000563842 NUPR1O60356 82 aa8.21□□□□□ -1.1
CLK3-213ENST00000563842 MRPL55Q7Z7F7 128 aaKnown RBP8.21□□□□□ -1.1
CLK3-213ENST00000563842 DIRC1Q969H9 104 aa8.21□□□□□ -1.1
CLK3-213ENST00000563842 H0Y8G0 127 aa8.2□□□□□ -1.1
CLK3-213ENST00000563842 LINC00310P59036 64 aa8.2□□□□□ -1.1
CLK3-213ENST00000563842 NKAPP1Q8N9T2 125 aa8.2□□□□□ -1.1
CLK3-213ENST00000563842 IGLV5-37A0A075B6J1 123 aa8.19□□□□□ -1.1
CLK3-213ENST00000563842 MT1HL1P0DM35 61 aa8.19□□□□□ -1.1
CLK3-213ENST00000563842 FABP4P15090 132 aa8.19□□□□□ -1.1
CLK3-213ENST00000563842 PLNP26678 52 aa8.19□□□□□ -1.1
CLK3-213ENST00000563842 KRTAP11-1Q8IUC1 163 aa8.19□□□□□ -1.1
CLK3-213ENST00000563842 ZNF625Q96I27 306 aaPredicted RBP8.19□□□□□ -1.1
CLK3-213ENST00000563842 LINC00587B1AMM8 73 aa8.18□□□□□ -1.1
CLK3-213ENST00000563842 SCO1O75880 301 aa8.18□□□□□ -1.1
CLK3-213ENST00000563842 RPL24P83731 157 aaKnown RBP8.18□□□□□ -1.1
CLK3-213ENST00000563842 HERV-K104P63124 156 aa8.17□□□□□ -1.1
CLK3-213ENST00000563842 MAP1LC3CQ9BXW4 147 aa8.17□□□□□ -1.1
CLK3-213ENST00000563842 H0Y9J4 135 aa8.16□□□□□ -1.1
CLK3-213ENST00000563842 HIST1H2BKO60814 126 aa8.16□□□□□ -1.1
CLK3-213ENST00000563842 ATP6V1G1O75348 118 aa8.16□□□□□ -1.1
CLK3-213ENST00000563842 DPM2O94777 84 aa8.16□□□□□ -1.1
CLK3-213ENST00000563842 HIST1H2BJP06899 126 aa8.16□□□□□ -1.1
CLK3-213ENST00000563842 HIST1H2BOP23527 126 aa8.16□□□□□ -1.1
CLK3-213ENST00000563842 HIST1H2BBP33778 126 aa8.16□□□□□ -1.1
CLK3-213ENST00000563842 LINC00158P58513 81 aa8.16□□□□□ -1.1
CLK3-213ENST00000563842 HIST1H2BDP58876 126 aa8.16□□□□□ -1.1
CLK3-213ENST00000563842 HERVK_113P61574 105 aa8.16□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 12.7 ms