RNA–Protein interactions for RNA: ENST00000562258.5

VPS39-205, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 2

Gene VPS39, Length 4,160 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-205ENST00000562258 UNQ6190/PRO20217Q6UXQ8 127 aa6.47□□□□□ -1.37
VPS39-205ENST00000562258 PRO1854Q9UHT4 67 aa6.47□□□□□ -1.37
VPS39-205ENST00000562258 USP17L23D6RBM5 183 aa6.46□□□□□ -1.37
VPS39-205ENST00000562258 C9orf116Q5BN46 136 aaPredicted RBP6.46□□□□□ -1.37
VPS39-205ENST00000562258 C9JAW5 83 aa6.46□□□□□ -1.38
VPS39-205ENST00000562258 GIG44P09565 113 aaPredicted RBP6.46□□□□□ -1.38
VPS39-205ENST00000562258 FAM19A4Q96LR4 140 aa6.46□□□□□ -1.38
VPS39-205ENST00000562258 IGKV2-28A0A075B6P5 120 aa6.45□□□□□ -1.38
VPS39-205ENST00000562258 TRAV13-2A0A0B4J235 113 aa6.45□□□□□ -1.38
VPS39-205ENST00000562258 IGKV2D-28P01615 120 aa6.45□□□□□ -1.38
VPS39-205ENST00000562258 YPEL4Q96NS1 127 aa6.45□□□□□ -1.38
VPS39-205ENST00000562258 LINC00242Q5T6M2 205 aa6.45□□□□□ -1.38
VPS39-205ENST00000562258 UFSP1Q6NVU6 142 aa6.45□□□□□ -1.38
VPS39-205ENST00000562258 CHCHD7Q9BUK0 85 aa6.45□□□□□ -1.38
VPS39-205ENST00000562258 COX6A2Q02221 97 aa6.45□□□□□ -1.38
VPS39-205ENST00000562258 KIF25-AS1Q9Y6Z4 181 aa6.45□□□□□ -1.38
VPS39-205ENST00000562258 PYGO1Q9Y3Y4 419 aa6.44□□□□□ -1.38
VPS39-205ENST00000562258 DMBT1Q9UGM3 2413 aaPredicted RBP6.44□□□□□ -1.38
VPS39-205ENST00000562258 IGKV2D-26A0A0A0MRZ7 120 aa6.44□□□□□ -1.38
VPS39-205ENST00000562258 NTM-AS1Q6ZSK4 140 aa6.44□□□□□ -1.38
VPS39-205ENST00000562258 RPL32P62910 135 aaKnown RBP6.44□□□□□ -1.38
VPS39-205ENST00000562258 CSNK1G2-AS1Q8NCQ2 148 aa6.44□□□□□ -1.38
VPS39-205ENST00000562258 PKIGQ9Y2B9 76 aa6.43□□□□□ -1.38
VPS39-205ENST00000562258 IGLV5-52A0A0A0MRZ9 124 aa6.43□□□□□ -1.38
VPS39-205ENST00000562258 SCGB1A1P11684 91 aa6.43□□□□□ -1.38
VPS39-205ENST00000562258 LINC01620Q4KN68 170 aa6.43□□□□□ -1.38
VPS39-205ENST00000562258 BVES-AS1Q5T3Y7 98 aa6.43□□□□□ -1.38
VPS39-205ENST00000562258 CEND1Q8N111 149 aa6.43□□□□□ -1.38
VPS39-205ENST00000562258 RPL37AP8A6NKH3 93 aa6.43□□□□□ -1.38
VPS39-205ENST00000562258 C6orf223Q8N319 242 aa6.43□□□□□ -1.38
VPS39-205ENST00000562258 A0A0J9YXY3 114 aa6.42□□□□□ -1.38
VPS39-205ENST00000562258 IGIPA6NJ69 53 aa6.42□□□□□ -1.38
VPS39-205ENST00000562258 UBE2D1P51668 147 aa6.42□□□□□ -1.38
VPS39-205ENST00000562258 LINC00315P59091 139 aa6.42□□□□□ -1.38
VPS39-205ENST00000562258 EGFEM1PQ0D2K5 195 aa6.42□□□□□ -1.38
VPS39-205ENST00000562258 ETDBQ3ZM63 59 aa6.42□□□□□ -1.38
VPS39-205ENST00000562258 LINC00588Q9Y4M8 146 aa6.42□□□□□ -1.38
VPS39-205ENST00000562258 K7EP13 123 aa6.41□□□□□ -1.38
VPS39-205ENST00000562258 FXYD2P54710 66 aa6.41□□□□□ -1.38
VPS39-205ENST00000562258 FAM19A1Q7Z5A9 133 aa6.41□□□□□ -1.38
VPS39-205ENST00000562258 URB1-AS1Q96HZ7 61 aa6.41□□□□□ -1.38
VPS39-205ENST00000562258 CFC1BP0CG36 223 aa6.41□□□□□ -1.38
VPS39-205ENST00000562258 CFC1P0CG37 223 aa6.41□□□□□ -1.38
VPS39-205ENST00000562258 TMEM223A0PJW6 202 aa6.4□□□□□ -1.38
VPS39-205ENST00000562258 MAPKAPK5-AS1Q8N8E1 139 aa6.4□□□□□ -1.38
VPS39-205ENST00000562258 IFITM1P13164 125 aa6.4□□□□□ -1.38
VPS39-205ENST00000562258 OCIAD2Q56VL3 154 aa6.4□□□□□ -1.38
VPS39-205ENST00000562258 TENM1Q9UKZ4 2725 aa6.4□□□□□ -1.38
VPS39-205ENST00000562258 H3BMG7 143 aa6.4□□□□□ -1.39
VPS39-205ENST00000562258 C7orf33Q8WU49 177 aa6.4□□□□□ -1.39
VPS39-205ENST00000562258 PDZD2O15018 2839 aa6.4□□□□□ -1.39
VPS39-205ENST00000562258 MRPS36P82909 103 aaKnown RBP6.39□□□□□ -1.39
VPS39-205ENST00000562258 NBPF19A0A087WUL8 3843 aa6.39□□□□□ -1.39
VPS39-205ENST00000562258 CDK2AP2O75956 126 aa6.39□□□□□ -1.39
VPS39-205ENST00000562258 SPATA12Q7Z6I5 190 aa6.39□□□□□ -1.39
VPS39-205ENST00000562258 PPDPFQ9H3Y8 114 aa6.39□□□□□ -1.39
VPS39-205ENST00000562258 SIGMAR1Q99720 223 aa6.39□□□□□ -1.39
VPS39-205ENST00000562258 TM2D3Q9BRN9 247 aa6.39□□□□□ -1.39
VPS39-205ENST00000562258 LINC00310P59036 64 aa6.38□□□□□ -1.39
VPS39-205ENST00000562258 DIRC1Q969H9 104 aa6.38□□□□□ -1.39
VPS39-205ENST00000562258 CSMD2Q7Z408 3487 aa6.37□□□□□ -1.39
VPS39-205ENST00000562258 A0A1B0GUV1 79 aa6.37□□□□□ -1.39
VPS39-205ENST00000562258 IBA57-AS1B1ANH7 110 aa6.37□□□□□ -1.39
VPS39-205ENST00000562258 C4orf48Q5BLP8 95 aa6.37□□□□□ -1.39
VPS39-205ENST00000562258 NBDYA0A0U1RRE5 68 aa6.37□□□□□ -1.39
VPS39-205ENST00000562258 C9orf118A6NHY6 69 aa6.37□□□□□ -1.39
VPS39-205ENST00000562258 PRR3P79522 188 aaKnown RBP6.37□□□□□ -1.39
VPS39-205ENST00000562258 LINC01556Q5JQF7 62 aa6.36□□□□□ -1.39
VPS39-205ENST00000562258 SPANXCQ9NY87 97 aa6.36□□□□□ -1.39
VPS39-205ENST00000562258 LOC107984640A0A0U1RRK4 108 aa6.36□□□□□ -1.39
VPS39-205ENST00000562258 SMIM1B2RUZ4 78 aa6.36□□□□□ -1.39
VPS39-205ENST00000562258 C9orf153Q5TBE3 101 aa6.36□□□□□ -1.39
VPS39-205ENST00000562258 GAGE2AQ6NT46 116 aa6.36□□□□□ -1.39
VPS39-205ENST00000562258 PTH2Q96A98 100 aa6.36□□□□□ -1.39
VPS39-205ENST00000562258 A0A096LNJ9 63 aa6.35□□□□□ -1.39
VPS39-205ENST00000562258 LINC00308Q8TCZ7 52 aa6.35□□□□□ -1.39
VPS39-205ENST00000562258 FUSP35637 526 aaKnown RBP eCLIP6.35□□□□□ -1.39
VPS39-205ENST00000562258 CSMD1Q96PZ7 3565 aa6.35□□□□□ -1.39
VPS39-205ENST00000562258 C6orf99Q4VX62 202 aa6.35□□□□□ -1.39
VPS39-205ENST00000562258 Q6ZRU5 148 aa6.35□□□□□ -1.39
VPS39-205ENST00000562258 A0A1W2PPM0 123 aa6.34□□□□□ -1.39
VPS39-205ENST00000562258 CLEC2BQ92478 149 aa6.34□□□□□ -1.39
VPS39-205ENST00000562258 PLAC8L1A1L4L8 177 aa6.34□□□□□ -1.39
VPS39-205ENST00000562258 Q8IZM0 81 aa6.34□□□□□ -1.4
VPS39-205ENST00000562258 TENM3Q9P273 2699 aa6.34□□□□□ -1.4
VPS39-205ENST00000562258 CSDC2Q9Y534 153 aaKnown RBP6.33□□□□□ -1.4
VPS39-205ENST00000562258 M0QXV9 152 aa6.32□□□□□ -1.4
VPS39-205ENST00000562258 BAALC-AS2P0C853 105 aa6.32□□□□□ -1.4
VPS39-205ENST00000562258 COX7BP24311 80 aa6.32□□□□□ -1.4
VPS39-205ENST00000562258 HAMPP81172 84 aa6.32□□□□□ -1.4
VPS39-205ENST00000562258 TGP01266 2768 aa6.32□□□□□ -1.4
VPS39-205ENST00000562258 A8MTW9 85 aa6.32□□□□□ -1.4
VPS39-205ENST00000562258 TAX1BP3O14907 124 aa6.32□□□□□ -1.4
VPS39-205ENST00000562258 DNAH10OSP0CZ25 163 aa6.32□□□□□ -1.4
VPS39-205ENST00000562258 DSCR8Q96T75 97 aa6.32□□□□□ -1.4
VPS39-205ENST00000562258 C16orf90A8MZG2 172 aa6.32□□□□□ -1.4
VPS39-205ENST00000562258 K7EP34 96 aa6.32□□□□□ -1.4
VPS39-205ENST00000562258 H3BNG1 76 aa6.32□□□□□ -1.4
VPS39-205ENST00000562258 AMELXQ99217 191 aa6.32□□□□□ -1.4
VPS39-205ENST00000562258 CUBNO60494 3623 aa6.31□□□□□ -1.4
Retrieved 100 of 20,778 RNA–protein pairs in 128.2 ms