RNA–Protein interactions for RNA: ENST00000558080.1

SPG11-205, Transcript of SPG11, spatacsin vesicle trafficking associated, humanhuman

TSL 1 (best)

Gene SPG11, Length 759 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPG11-205ENST00000558080 TIMM21Q9BVV7 248 aa4.94□□□□□ -1.62
SPG11-205ENST00000558080 C1orf43Q9BWL3 253 aa4.94□□□□□ -1.62
SPG11-205ENST00000558080 CST9LQ9H4G1 147 aa4.94□□□□□ -1.62
SPG11-205ENST00000558080 IGLV4-3A0A075B6K6 122 aa4.93□□□□□ -1.62
SPG11-205ENST00000558080 ZC2HC1BQ5TFG8 222 aa4.93□□□□□ -1.62
SPG11-205ENST00000558080 CLPSL2Q6UWE3 100 aa4.93□□□□□ -1.62
SPG11-205ENST00000558080 STPG4Q8N801 248 aa4.93□□□□□ -1.62
SPG11-205ENST00000558080 VCX2Q9H322 139 aa4.93□□□□□ -1.62
SPG11-205ENST00000558080 UBE2D4Q9Y2X8 147 aa4.93□□□□□ -1.62
SPG11-205ENST00000558080 VPS13BQ7Z7G8 4022 aa4.93□□□□□ -1.62
SPG11-205ENST00000558080 DNAH8Q96JB1 4490 aa4.92□□□□□ -1.62
SPG11-205ENST00000558080 TRBV25-1A0A075B6N4 114 aa4.92□□□□□ -1.62
SPG11-205ENST00000558080 IGKV2D-29A0A075B6S2 120 aaPredicted RBP4.92□□□□□ -1.62
SPG11-205ENST00000558080 IGKV2-29A2NJV5 120 aaPredicted RBP4.92□□□□□ -1.62
SPG11-205ENST00000558080 H7C423 109 aa4.92□□□□□ -1.62
SPG11-205ENST00000558080 M0R143 59 aa4.92□□□□□ -1.62
SPG11-205ENST00000558080 DLEU1O43261 78 aa4.92□□□□□ -1.62
SPG11-205ENST00000558080 NMUP48645 174 aa4.92□□□□□ -1.62
SPG11-205ENST00000558080 HERVK_113P61574 105 aa4.92□□□□□ -1.62
SPG11-205ENST00000558080 RBX1P62877 108 aa4.92□□□□□ -1.62
SPG11-205ENST00000558080 MRPS36P82909 103 aaKnown RBP4.92□□□□□ -1.62
SPG11-205ENST00000558080 LBHQ53QV2 105 aaPredicted RBP4.92□□□□□ -1.62
SPG11-205ENST00000558080 Q6ZSA8 131 aa4.92□□□□□ -1.62
SPG11-205ENST00000558080 AMELXQ99217 191 aa4.92□□□□□ -1.62
SPG11-205ENST00000558080 C2orf88Q9BSF0 95 aa4.92□□□□□ -1.62
SPG11-205ENST00000558080 TMEM243Q9BU79 118 aa4.92□□□□□ -1.62
SPG11-205ENST00000558080 IGLV4-69A0A075B6H9 119 aa4.91□□□□□ -1.62
SPG11-205ENST00000558080 C11orf86A6NJI1 115 aa4.91□□□□□ -1.62
SPG11-205ENST00000558080 KRTAP29-1A8MX34 341 aaPredicted RBP4.91□□□□□ -1.62
SPG11-205ENST00000558080 USP17L23D6RBM5 183 aa4.91□□□□□ -1.62
SPG11-205ENST00000558080 UBE2L6O14933 153 aa4.91□□□□□ -1.62
SPG11-205ENST00000558080 CTAG1AP78358 180 aa4.91□□□□□ -1.62
SPG11-205ENST00000558080 C14orf177Q52M58 125 aa4.91□□□□□ -1.62
SPG11-205ENST00000558080 DGAT2L7PQ6IED9 249 aa4.91□□□□□ -1.62
SPG11-205ENST00000558080 BOD1L2Q8IYS8 172 aa4.91□□□□□ -1.62
SPG11-205ENST00000558080 LINC00269Q8N2A0 174 aa4.91□□□□□ -1.62
SPG11-205ENST00000558080 TMEM101Q96IK0 257 aa4.91□□□□□ -1.62
SPG11-205ENST00000558080 CSDC2Q9Y534 153 aaKnown RBP4.91□□□□□ -1.62
SPG11-205ENST00000558080 IGLV10-54A0A075B6I4 117 aa4.9□□□□□ -1.63
SPG11-205ENST00000558080 E9PLD3 99 aa4.9□□□□□ -1.63
SPG11-205ENST00000558080 FGF6P10767 208 aa4.9□□□□□ -1.63
SPG11-205ENST00000558080 ZNF25P17030 456 aaPredicted RBP4.9□□□□□ -1.63
SPG11-205ENST00000558080 MIAQ16674 131 aa4.9□□□□□ -1.63
SPG11-205ENST00000558080 Q6ZUT4 128 aa4.9□□□□□ -1.63
SPG11-205ENST00000558080 SCXQ7RTU7 201 aa4.9□□□□□ -1.63
SPG11-205ENST00000558080 OPRPNQ99935 248 aaPredicted RBP4.9□□□□□ -1.63
SPG11-205ENST00000558080 CHAC1Q9BUX1 264 aa4.9□□□□□ -1.63
SPG11-205ENST00000558080 IGLV4-60A0A075B6I1 120 aa4.89□□□□□ -1.63
SPG11-205ENST00000558080 IGKV2D-26A0A0A0MRZ7 120 aa4.89□□□□□ -1.63
SPG11-205ENST00000558080 REG3AQ06141 175 aa4.89□□□□□ -1.63
SPG11-205ENST00000558080 TMEM170BQ5T4T1 132 aa4.89□□□□□ -1.63
SPG11-205ENST00000558080 AMMECR1LQ6DCA0 310 aa4.89□□□□□ -1.63
SPG11-205ENST00000558080 KRTAP26-1Q6PEX3 210 aa4.89□□□□□ -1.63
SPG11-205ENST00000558080 OR5A1Q8NGJ0 315 aa4.89□□□□□ -1.63
SPG11-205ENST00000558080 SNHG12Q9BXW3 62 aa4.89□□□□□ -1.63
SPG11-205ENST00000558080 PRR34Q9NV39 138 aa4.89□□□□□ -1.63
SPG11-205ENST00000558080 HERC1Q15751 4861 aa4.89□□□□□ -1.63
SPG11-205ENST00000558080 A0A0J9YXV3 536 aa4.88□□□□□ -1.63
SPG11-205ENST00000558080 TINCRA0A1B0GVN0 87 aa4.88□□□□□ -1.63
SPG11-205ENST00000558080 UBE2D1P51668 147 aa4.88□□□□□ -1.63
SPG11-205ENST00000558080 SEC11AP67812 179 aa4.88□□□□□ -1.63
SPG11-205ENST00000558080 C2orf91Q6ZV80 131 aa4.88□□□□□ -1.63
SPG11-205ENST00000558080 PCP2Q8IVA1 136 aa4.88□□□□□ -1.63
SPG11-205ENST00000558080 CIRBP-AS1Q8TBR5 109 aa4.88□□□□□ -1.63
SPG11-205ENST00000558080 FAM104AQ969W3 186 aa4.88□□□□□ -1.63
SPG11-205ENST00000558080 HIGD1BQ9P298 99 aa4.88□□□□□ -1.63
SPG11-205ENST00000558080 MYCBP2O75592 4640 aa4.88□□□□□ -1.63
SPG11-205ENST00000558080 MYMXA0A1B0GTQ4 84 aa4.87□□□□□ -1.63
SPG11-205ENST00000558080 A0A1B0GUV1 79 aa4.87□□□□□ -1.63
SPG11-205ENST00000558080 TMEM223A0PJW6 202 aa4.87□□□□□ -1.63
SPG11-205ENST00000558080 LEPROTO15243 131 aa4.87□□□□□ -1.63
SPG11-205ENST00000558080 ZNF22P17026 224 aaPredicted RBP4.87□□□□□ -1.63
SPG11-205ENST00000558080 HSD52Q0P140 79 aa4.87□□□□□ -1.63
SPG11-205ENST00000558080 BATFQ16520 125 aa4.87□□□□□ -1.63
SPG11-205ENST00000558080 COL5A1-AS1Q5SY13 56 aa4.87□□□□□ -1.63
SPG11-205ENST00000558080 FAM19A3Q7Z5A8 133 aa4.87□□□□□ -1.63
SPG11-205ENST00000558080 PLEKHB2Q96CS7 222 aa4.87□□□□□ -1.63
SPG11-205ENST00000558080 GEMIN7Q9H840 131 aaKnown RBP4.87□□□□□ -1.63
SPG11-205ENST00000558080 CDC42SE2Q9NRR3 84 aa4.87□□□□□ -1.63
SPG11-205ENST00000558080 TP73-AS1Q9UF72 201 aa4.87□□□□□ -1.63
SPG11-205ENST00000558080 IGLV5-45A0A087WSX0 123 aa4.86□□□□□ -1.63
SPG11-205ENST00000558080 TRAV8-4A0A0B4J246 113 aa4.86□□□□□ -1.63
SPG11-205ENST00000558080 IGKV3OR2-268A0A0C4DH90 116 aa4.86□□□□□ -1.63
SPG11-205ENST00000558080 H3BRM9 83 aa4.86□□□□□ -1.63
SPG11-205ENST00000558080 LGALS3P17931 250 aaKnown RBP4.86□□□□□ -1.63
SPG11-205ENST00000558080 HINT1P49773 126 aaPredicted RBP4.86□□□□□ -1.63
SPG11-205ENST00000558080 HERVK_113P63121 156 aa4.86□□□□□ -1.63
SPG11-205ENST00000558080 RNASE13Q5GAN3 156 aaKnown RBP4.86□□□□□ -1.63
SPG11-205ENST00000558080 C9orf163Q8N9P6 203 aa4.86□□□□□ -1.63
SPG11-205ENST00000558080 GAGE12HA6NDE8 117 aa4.85□□□□□ -1.63
SPG11-205ENST00000558080 ZNF815PA8K554 130 aa4.85□□□□□ -1.63
SPG11-205ENST00000558080 J3QQQ9 107 aa4.85□□□□□ -1.63
SPG11-205ENST00000558080 PTTG1IPP53801 180 aa4.85□□□□□ -1.63
SPG11-205ENST00000558080 TAL2Q16559 108 aa4.85□□□□□ -1.63
SPG11-205ENST00000558080 BVES-AS1Q5T3Y7 98 aa4.85□□□□□ -1.63
SPG11-205ENST00000558080 LINC00469Q8N7U9 141 aa4.85□□□□□ -1.63
SPG11-205ENST00000558080 TTTY13Q9BZ97 58 aa4.85□□□□□ -1.63
SPG11-205ENST00000558080 TRAV13-1A0A0B4J241 112 aa4.84□□□□□ -1.63
SPG11-205ENST00000558080 IGHV1-58A0A0C4DH39 117 aa4.84□□□□□ -1.63
SPG11-205ENST00000558080 PANO1I0J062 215 aa4.84□□□□□ -1.63
Retrieved 100 of 20,778 RNA–protein pairs in 39.3 ms