RNA–Protein interactions for RNA: ENST00000557433.5

SHMT2-231, Transcript of serine hydroxymethyltransferase 2, human

TSL 1 (best)

Gene SHMT2, Length 1,904 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SHMT2-231	ENST00000557433	BBC3	Q96PG8	261 aa	Predicted RBP	11.25	□□□□□ -0.61
SHMT2-231	ENST00000557433	PRO0255	Q9UI72	69 aa		11.25	□□□□□ -0.61
SHMT2-231	ENST00000557433	CFAP161	Q6P656	301 aa		11.25	□□□□□ -0.61
SHMT2-231	ENST00000557433	CD164L2	Q6UWJ8	174 aa		11.25	□□□□□ -0.61
SHMT2-231	ENST00000557433	TRBV10-3	A0A0K0K1G6	114 aa		11.24	□□□□□ -0.61
SHMT2-231	ENST00000557433	SLPI	P03973	132 aa		11.24	□□□□□ -0.61
SHMT2-231	ENST00000557433	CELSR2	Q9HCU4	2923 aa		11.24	□□□□□ -0.61
SHMT2-231	ENST00000557433	USP17L23	D6RBM5	183 aa		11.23	□□□□□ -0.61
SHMT2-231	ENST00000557433	NANOS2	P60321	138 aa	Known RBP	11.23	□□□□□ -0.61
SHMT2-231	ENST00000557433	TMEM258	P61165	79 aa		11.23	□□□□□ -0.61
SHMT2-231	ENST00000557433	CRYBG3	Q68DQ2	2970 aa		11.23	□□□□□ -0.61
SHMT2-231	ENST00000557433	DEFB130B	P0DP73	79 aa		11.23	□□□□□ -0.61
SHMT2-231	ENST00000557433	DEFB130A	P0DP74	79 aa		11.23	□□□□□ -0.61
SHMT2-231	ENST00000557433	LYPD5	Q6UWN5	251 aa		11.23	□□□□□ -0.61
SHMT2-231	ENST00000557433	C11orf68	Q9H3H3	251 aa	Known RBP	11.23	□□□□□ -0.61
SHMT2-231	ENST00000557433	CFAP46	Q8IYW2	2715 aa		11.22	□□□□□ -0.61
SHMT2-231	ENST00000557433	PLA2G2A	P14555	144 aa		11.22	□□□□□ -0.61
SHMT2-231	ENST00000557433	KIAA0087	Q14695	138 aa		11.22	□□□□□ -0.61
SHMT2-231	ENST00000557433	hADV29S1	A0JD25	119 aa		11.21	□□□□□ -0.61
SHMT2-231	ENST00000557433		H3BQ85	93 aa		11.21	□□□□□ -0.61
SHMT2-231	ENST00000557433	MYO9A	B2RTY4	2548 aa		11.21	□□□□□ -0.61
SHMT2-231	ENST00000557433	IGSF10	Q6WRI0	2623 aa		11.21	□□□□□ -0.62
SHMT2-231	ENST00000557433	MXRA5	Q9NR99	2828 aa		11.2	□□□□□ -0.62
SHMT2-231	ENST00000557433	UPK3B	Q9BT76	320 aa		11.2	□□□□□ -0.62
SHMT2-231	ENST00000557433	LYRM9	A8MSI8	78 aa		11.19	□□□□□ -0.62
SHMT2-231	ENST00000557433	PRB1	P04280	392 aa		11.19	□□□□□ -0.62
SHMT2-231	ENST00000557433	FLNC	Q14315	2725 aa		11.19	□□□□□ -0.62
SHMT2-231	ENST00000557433	UBL5	Q9BZL1	73 aa		11.18	□□□□□ -0.62
SHMT2-231	ENST00000557433	CHCHD10	Q8WYQ3	142 aa	Predicted RBP	11.17	□□□□□ -0.62
SHMT2-231	ENST00000557433	ZAN	Q9Y493	2812 aa		11.17	□□□□□ -0.62
SHMT2-231	ENST00000557433	BCE1	O60756	84 aa		11.17	□□□□□ -0.62
SHMT2-231	ENST00000557433	MAP1A	P78559	2803 aa	Predicted RBP	11.17	□□□□□ -0.62
SHMT2-231	ENST00000557433	NAV2	Q8IVL1	2488 aa		11.16	□□□□□ -0.62
SHMT2-231	ENST00000557433		A0A087WVE0	104 aa		11.16	□□□□□ -0.62
SHMT2-231	ENST00000557433	LINC00575	Q6W349	94 aa		11.16	□□□□□ -0.62
SHMT2-231	ENST00000557433	WFDC11	Q8NEX6	87 aa		11.16	□□□□□ -0.62
SHMT2-231	ENST00000557433		X6R8D5	127 aa		11.16	□□□□□ -0.62
SHMT2-231	ENST00000557433	LINC00269	Q8N2A0	174 aa		11.15	□□□□□ -0.62
SHMT2-231	ENST00000557433	C2CD3	Q4AC94	2353 aa		11.15	□□□□□ -0.62
SHMT2-231	ENST00000557433	LOC110117498	A0A087WWA1	95 aa		11.15	□□□□□ -0.62
SHMT2-231	ENST00000557433	NDUFC2-KCTD14	E9PQ53	114 aa		11.15	□□□□□ -0.62
SHMT2-231	ENST00000557433	FBN2	P35556	2912 aa		11.15	□□□□□ -0.62
SHMT2-231	ENST00000557433	ZNF843	Q8N446	348 aa		11.15	□□□□□ -0.62
SHMT2-231	ENST00000557433	ZNF561-AS1	K7EIQ3	104 aa		11.14	□□□□□ -0.63
SHMT2-231	ENST00000557433	REG3A	Q06141	175 aa		11.14	□□□□□ -0.63
SHMT2-231	ENST00000557433	C6orf99	Q4VX62	202 aa		11.14	□□□□□ -0.63
SHMT2-231	ENST00000557433	CLPSL2	Q6UWE3	100 aa		11.14	□□□□□ -0.63
SHMT2-231	ENST00000557433	NOTCH3	Q9UM47	2321 aa		11.14	□□□□□ -0.63
SHMT2-231	ENST00000557433	PDE6G	P18545	87 aa		11.13	□□□□□ -0.63
SHMT2-231	ENST00000557433	PRR3	P79522	188 aa	Known RBP	11.13	□□□□□ -0.63
SHMT2-231	ENST00000557433	WNK1	Q9H4A3	2382 aa		11.13	□□□□□ -0.63
SHMT2-231	ENST00000557433	POLQ	O75417	2590 aa		11.13	□□□□□ -0.63
SHMT2-231	ENST00000557433	MYO18B	Q8IUG5	2567 aa		11.12	□□□□□ -0.63
SHMT2-231	ENST00000557433	RBM3	P98179	157 aa	Known RBP	11.12	□□□□□ -0.63
SHMT2-231	ENST00000557433	UTP20	O75691	2785 aa	Known RBP	11.12	□□□□□ -0.63
SHMT2-231	ENST00000557433	PTPN13	Q12923	2485 aa		11.12	□□□□□ -0.63
SHMT2-231	ENST00000557433	ANG	P03950	147 aa	Known RBP	11.11	□□□□□ -0.63
SHMT2-231	ENST00000557433	C6orf223	Q8N319	242 aa		11.11	□□□□□ -0.63
SHMT2-231	ENST00000557433		A0A0J9YWU9	116 aa		11.11	□□□□□ -0.63
SHMT2-231	ENST00000557433	IGHV4-30-4	P0DP06	118 aa		11.11	□□□□□ -0.63
SHMT2-231	ENST00000557433		Q6ZQT0	140 aa		11.11	□□□□□ -0.63
SHMT2-231	ENST00000557433	GHRH	P01286	108 aa		11.1	□□□□□ -0.63
SHMT2-231	ENST00000557433	HILS1	P60008	231 aa		11.1	□□□□□ -0.63
SHMT2-231	ENST00000557433	LOC107984640	A0A0U1RRK4	108 aa		11.09	□□□□□ -0.63
SHMT2-231	ENST00000557433	KRTAP1-1	Q07627	177 aa		11.09	□□□□□ -0.63
SHMT2-231	ENST00000557433	DPH3	Q96FX2	82 aa		11.09	□□□□□ -0.63
SHMT2-231	ENST00000557433	TEX15	Q9BXT5	2789 aa		11.09	□□□□□ -0.63
SHMT2-231	ENST00000557433	IGLV6-57	P01721	117 aa		11.09	□□□□□ -0.63
SHMT2-231	ENST00000557433	FAM19A5	Q7Z5A7	132 aa	Predicted RBP	11.09	□□□□□ -0.63
SHMT2-231	ENST00000557433	ENHO	Q6UWT2	76 aa		11.08	□□□□□ -0.64
SHMT2-231	ENST00000557433	LINC00482	Q8N8I6	264 aa		11.08	□□□□□ -0.64
SHMT2-231	ENST00000557433		A0A096LPF7	62 aa		11.07	□□□□□ -0.64
SHMT2-231	ENST00000557433	GVQW2	A0A096LPI5	108 aa	Predicted RBP	11.07	□□□□□ -0.64
SHMT2-231	ENST00000557433	SPAG11B	Q08648	103 aa		11.07	□□□□□ -0.64
SHMT2-231	ENST00000557433	CYSTM1	Q9H1C7	97 aa		11.07	□□□□□ -0.64
SHMT2-231	ENST00000557433	C9orf66	Q5T8R8	295 aa		11.06	□□□□□ -0.64
SHMT2-231	ENST00000557433	C9orf116	Q5BN46	136 aa	Predicted RBP	11.05	□□□□□ -0.64
SHMT2-231	ENST00000557433	TLN2	Q9Y4G6	2542 aa		11.05	□□□□□ -0.64
SHMT2-231	ENST00000557433	IGLV10-54	A0A075B6I4	117 aa		11.05	□□□□□ -0.64
SHMT2-231	ENST00000557433	LELP1	Q5T871	98 aa		11.05	□□□□□ -0.64
SHMT2-231	ENST00000557433	FAM19A1	Q7Z5A9	133 aa		11.05	□□□□□ -0.64
SHMT2-231	ENST00000557433	DSCR8	Q96T75	97 aa		11.05	□□□□□ -0.64
SHMT2-231	ENST00000557433	LAMTOR3	Q9UHA4	124 aa		11.05	□□□□□ -0.64
SHMT2-231	ENST00000557433	ZNF462	Q96JM2	2506 aa		11.04	□□□□□ -0.64
SHMT2-231	ENST00000557433	TRAV23DV6	A0A075B6W5	121 aa		11.04	□□□□□ -0.64
SHMT2-231	ENST00000557433	DAD1	P61803	113 aa		11.04	□□□□□ -0.64
SHMT2-231	ENST00000557433		Q8NDZ9	215 aa		11.04	□□□□□ -0.64
SHMT2-231	ENST00000557433	APOC4	P55056	127 aa		11.03	□□□□□ -0.64
SHMT2-231	ENST00000557433	C5orf47	Q569G3	176 aa		11.03	□□□□□ -0.64
SHMT2-231	ENST00000557433	CXCL6	P80162	114 aa		11.03	□□□□□ -0.64
SHMT2-231	ENST00000557433	UNQ6190/PRO20217	Q6UXQ8	127 aa		11.03	□□□□□ -0.64
SHMT2-231	ENST00000557433	PRR34	Q9NV39	138 aa		11.03	□□□□□ -0.64
SHMT2-231	ENST00000557433	AKAP9	Q99996	3911 aa		11.03	□□□□□ -0.64
SHMT2-231	ENST00000557433	FASN	P49327	2511 aa	Known RBP	11.02	□□□□□ -0.64
SHMT2-231	ENST00000557433	TRAV7	A0A075B6U4	112 aa		11.02	□□□□□ -0.65
SHMT2-231	ENST00000557433	TRBV7-6	A0A0J9YX20	115 aa		11.02	□□□□□ -0.65
SHMT2-231	ENST00000557433		J3QKU1	62 aa		11.02	□□□□□ -0.65
SHMT2-231	ENST00000557433	LRRK2	Q5S007	2527 aa		11.02	□□□□□ -0.65
SHMT2-231	ENST00000557433	CSMD2	Q7Z408	3487 aa		11.02	□□□□□ -0.65
SHMT2-231	ENST00000557433	CYSRT1	A8MQ03	144 aa		11.01	□□□□□ -0.65

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