RNA–Protein interactions for RNA: ENST00000556798.1

SHMT2-225, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 525 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-225ENST00000556798 MRPL35Q9NZE8 188 aaKnown RBP11.16□□□□□ -0.62
SHMT2-225ENST00000556798 C6orf48Q9UBA6 75 aa11.16□□□□□ -0.62
SHMT2-225ENST00000556798 HSPB8Q9UJY1 196 aa11.16□□□□□ -0.62
SHMT2-225ENST00000556798 F8WDY8 70 aa11.15□□□□□ -0.62
SHMT2-225ENST00000556798 SPACA4Q8TDM5 124 aa11.15□□□□□ -0.62
SHMT2-225ENST00000556798 FAT1Q14517 4588 aa11.15□□□□□ -0.62
SHMT2-225ENST00000556798 F8VRH5 84 aa11.14□□□□□ -0.63
SHMT2-225ENST00000556798 CKS1BP61024 79 aa11.14□□□□□ -0.63
SHMT2-225ENST00000556798 CIRBPQ14011 172 aaKnown RBP11.14□□□□□ -0.63
SHMT2-225ENST00000556798 C6orf226Q5I0X4 101 aa11.14□□□□□ -0.63
SHMT2-225ENST00000556798 TMEM170BQ5T4T1 132 aa11.14□□□□□ -0.63
SHMT2-225ENST00000556798 LOC107984640A0A0U1RRK4 108 aa11.13□□□□□ -0.63
SHMT2-225ENST00000556798 RPL18AQ02543 176 aaKnown RBP11.13□□□□□ -0.63
SHMT2-225ENST00000556798 GAGE2BQ13066 116 aa11.13□□□□□ -0.63
SHMT2-225ENST00000556798 ODF1Q14990 250 aa11.13□□□□□ -0.63
SHMT2-225ENST00000556798 RNF151Q2KHN1 245 aa11.13□□□□□ -0.63
SHMT2-225ENST00000556798 MAJINQ3KP22 176 aa11.13□□□□□ -0.63
SHMT2-225ENST00000556798 COA6Q5JTJ3 125 aaKnown RBP11.13□□□□□ -0.63
SHMT2-225ENST00000556798 COX7B2Q8TF08 81 aa11.13□□□□□ -0.63
SHMT2-225ENST00000556798 DPH3Q96FX2 82 aa11.13□□□□□ -0.63
SHMT2-225ENST00000556798 Q8N1X5 172 aa11.12□□□□□ -0.63
SHMT2-225ENST00000556798 PKIGQ9Y2B9 76 aa11.12□□□□□ -0.63
SHMT2-225ENST00000556798 C9orf116Q5BN46 136 aaPredicted RBP11.11□□□□□ -0.63
SHMT2-225ENST00000556798 A0A087WYN8 130 aa11.1□□□□□ -0.63
SHMT2-225ENST00000556798 IGLV5-39A0A0G2JS06 123 aa11.1□□□□□ -0.63
SHMT2-225ENST00000556798 TRBV30A0A0K0K1B3 111 aa11.1□□□□□ -0.63
SHMT2-225ENST00000556798 PTTG1IPP53801 180 aa11.1□□□□□ -0.63
SHMT2-225ENST00000556798 PMCHL2Q9BQD1 86 aa11.1□□□□□ -0.63
SHMT2-225ENST00000556798 MAP1LC3CQ9BXW4 147 aa11.1□□□□□ -0.63
SHMT2-225ENST00000556798 KRTAP4-5Q9BYR2 181 aa11.1□□□□□ -0.63
SHMT2-225ENST00000556798 CXCL5P42830 114 aa11.08□□□□□ -0.64
SHMT2-225ENST00000556798 Q5VSD8 79 aa11.08□□□□□ -0.64
SHMT2-225ENST00000556798 LINC00528Q8N1L1 170 aa11.08□□□□□ -0.64
SHMT2-225ENST00000556798 TMEM223A0PJW6 202 aa11.07□□□□□ -0.64
SHMT2-225ENST00000556798 TLX1NBP0CAT3 122 aa11.07□□□□□ -0.64
SHMT2-225ENST00000556798 Q6ZRP5 223 aa11.07□□□□□ -0.64
SHMT2-225ENST00000556798 STPG4Q8N801 248 aa11.07□□□□□ -0.64
SHMT2-225ENST00000556798 LINC00474Q9P2X8 69 aa11.07□□□□□ -0.64
SHMT2-225ENST00000556798 EPM2AB3EWF7 344 aa11.06□□□□□ -0.64
SHMT2-225ENST00000556798 GAGE2EQ4V326 116 aa11.06□□□□□ -0.64
SHMT2-225ENST00000556798 GAGE2DQ9UEU5 116 aa11.06□□□□□ -0.64
SHMT2-225ENST00000556798 SYS1-DBNDD2H3BUS1 97 aa11.05□□□□□ -0.64
SHMT2-225ENST00000556798 PLAC8Q9NZF1 115 aa11.05□□□□□ -0.64
SHMT2-225ENST00000556798 NDUFC2-KCTD14E9PQ53 114 aa11.04□□□□□ -0.64
SHMT2-225ENST00000556798 DPM2O94777 84 aa11.04□□□□□ -0.64
SHMT2-225ENST00000556798 PLNP26678 52 aa11.04□□□□□ -0.64
SHMT2-225ENST00000556798 FAM229AH3BQW9 127 aa11.03□□□□□ -0.64
SHMT2-225ENST00000556798 IGKCP01834 107 aa11.03□□□□□ -0.64
SHMT2-225ENST00000556798 A0A1W2PNN7 141 aa11.02□□□□□ -0.65
SHMT2-225ENST00000556798 C3orf79P0CE67 100 aa11.02□□□□□ -0.65
SHMT2-225ENST00000556798 KRTDAPP60985 99 aa11.01□□□□□ -0.65
SHMT2-225ENST00000556798 ABCA13Q86UQ4 5058 aa11□□□□□ -0.65
SHMT2-225ENST00000556798 FAM168BA1KXE4 195 aa11□□□□□ -0.65
SHMT2-225ENST00000556798 ZNF625Q96I27 306 aaPredicted RBP11□□□□□ -0.65
SHMT2-225ENST00000556798 C9orf129Q5T035 196 aaKnown RBP10.99□□□□□ -0.65
SHMT2-225ENST00000556798 LINC01545Q5VT33 79 aa10.99□□□□□ -0.65
SHMT2-225ENST00000556798 PET117Q6UWS5 81 aa10.99□□□□□ -0.65
SHMT2-225ENST00000556798 HIST3H2BBQ8N257 126 aa10.99□□□□□ -0.65
SHMT2-225ENST00000556798 VPS13BQ7Z7G8 4022 aa10.99□□□□□ -0.65
SHMT2-225ENST00000556798 S100A6P06703 90 aa10.98□□□□□ -0.65
SHMT2-225ENST00000556798 XAGE1AQ9HD64 81 aa10.98□□□□□ -0.65
SHMT2-225ENST00000556798 PFN2P35080 140 aa10.97□□□□□ -0.65
SHMT2-225ENST00000556798 TSPEAR-AS2P59090 65 aa10.97□□□□□ -0.65
SHMT2-225ENST00000556798 HERVK_113P61574 105 aa10.97□□□□□ -0.65
SHMT2-225ENST00000556798 FAM19A5Q7Z5A7 132 aaPredicted RBP10.97□□□□□ -0.65
SHMT2-225ENST00000556798 SRRM2Q9UQ35 2752 aaKnown RBP10.96□□□□□ -0.65
SHMT2-225ENST00000556798 PLA2G1BP04054 148 aaKnown RBP10.96□□□□□ -0.65
SHMT2-225ENST00000556798 S100A2P29034 98 aa10.96□□□□□ -0.65
SHMT2-225ENST00000556798 RPL37AP61513 92 aaKnown RBP10.96□□□□□ -0.65
SHMT2-225ENST00000556798 ERG28Q9UKR5 140 aa10.96□□□□□ -0.65
SHMT2-225ENST00000556798 LEPROTO15243 131 aa10.95□□□□□ -0.66
SHMT2-225ENST00000556798 SFTA2Q6UW10 78 aa10.95□□□□□ -0.66
SHMT2-225ENST00000556798 C7orf33Q8WU49 177 aa10.95□□□□□ -0.66
SHMT2-225ENST00000556798 HIST1H2BLQ99880 126 aa10.95□□□□□ -0.66
SHMT2-225ENST00000556798 KRTAP10-4P60372 401 aaPredicted RBP10.94□□□□□ -0.66
SHMT2-225ENST00000556798 SNRPEP62304 92 aaKnown RBP10.94□□□□□ -0.66
SHMT2-225ENST00000556798 PHF5AQ7RTV0 110 aaKnown RBP10.94□□□□□ -0.66
SHMT2-225ENST00000556798 KRTAP7-1Q8IUC3 87 aa10.94□□□□□ -0.66
SHMT2-225ENST00000556798 PLEKHB2Q96CS7 222 aa10.94□□□□□ -0.66
SHMT2-225ENST00000556798 NDUFA12Q9UI09 145 aa10.94□□□□□ -0.66
SHMT2-225ENST00000556798 PCLOQ9Y6V0 5065 aa10.93□□□□□ -0.66
SHMT2-225ENST00000556798 J3QQQ9 107 aa10.92□□□□□ -0.66
SHMT2-225ENST00000556798 SERTAD4-AS1Q5TG53 156 aa10.92□□□□□ -0.66
SHMT2-225ENST00000556798 A0A0U1RRA0 63 aa10.91□□□□□ -0.66
SHMT2-225ENST00000556798 C20orf202A1L168 122 aa10.91□□□□□ -0.66
SHMT2-225ENST00000556798 E9PLD3 99 aa10.9□□□□□ -0.66
SHMT2-225ENST00000556798 M0QXV9 152 aa10.9□□□□□ -0.66
SHMT2-225ENST00000556798 LGALS3P17931 250 aaKnown RBP10.9□□□□□ -0.66
SHMT2-225ENST00000556798 COX17Q14061 63 aa10.9□□□□□ -0.66
SHMT2-225ENST00000556798 MEIG1Q5JSS6 88 aa10.9□□□□□ -0.66
SHMT2-225ENST00000556798 MYMXA0A1B0GTQ4 84 aa10.89□□□□□ -0.67
SHMT2-225ENST00000556798 INAFM2P0DMQ5 153 aa10.89□□□□□ -0.67
SHMT2-225ENST00000556798 LINC00158P58513 81 aa10.89□□□□□ -0.67
SHMT2-225ENST00000556798 ATOH7Q8N100 152 aa10.89□□□□□ -0.67
SHMT2-225ENST00000556798 C5orf52A6NGY3 159 aa10.88□□□□□ -0.67
SHMT2-225ENST00000556798 SMIM13P0DJ93 91 aa10.88□□□□□ -0.67
SHMT2-225ENST00000556798 HERV-K104P63124 156 aa10.88□□□□□ -0.67
SHMT2-225ENST00000556798 SND1-IT1Q9HBX3 110 aa10.88□□□□□ -0.67
SHMT2-225ENST00000556798 PRR3P79522 188 aaKnown RBP10.87□□□□□ -0.67
SHMT2-225ENST00000556798 HNRNPA3P51991 378 aaKnown RBP10.86□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 87.5 ms