RNA–Protein interactions for RNA: ENST00000556689.5

SHMT2-223, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 3

Gene SHMT2, Length 768 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-223ENST00000556689 TIMM17AQ99595 171 aa7.72□□□□□ -1.17
SHMT2-223ENST00000556689 MAP1LC3CQ9BXW4 147 aa7.72□□□□□ -1.17
SHMT2-223ENST00000556689 CDC42SE2Q9NRR3 84 aa7.72□□□□□ -1.17
SHMT2-223ENST00000556689 RPL39P62891 51 aaKnown RBP7.71□□□□□ -1.18
SHMT2-223ENST00000556689 TEX43Q6ZNM6 134 aa7.71□□□□□ -1.18
SHMT2-223ENST00000556689 FAM19A2Q8N3H0 131 aa7.71□□□□□ -1.18
SHMT2-223ENST00000556689 URB1-AS1Q96HZ7 61 aa7.71□□□□□ -1.18
SHMT2-223ENST00000556689 PYGO1Q9Y3Y4 419 aa7.71□□□□□ -1.18
SHMT2-223ENST00000556689 CSDC2Q9Y534 153 aaKnown RBP7.71□□□□□ -1.18
SHMT2-223ENST00000556689 C20orf202A1L168 122 aa7.7□□□□□ -1.18
SHMT2-223ENST00000556689 APOMO95445 188 aa7.7□□□□□ -1.18
SHMT2-223ENST00000556689 FABP4P15090 132 aa7.7□□□□□ -1.18
SHMT2-223ENST00000556689 MALP21145 153 aa7.7□□□□□ -1.18
SHMT2-223ENST00000556689 DIRC1Q969H9 104 aa7.7□□□□□ -1.18
SHMT2-223ENST00000556689 IFI27L1Q96BM0 104 aa7.7□□□□□ -1.18
SHMT2-223ENST00000556689 CAMK2N2Q96S95 79 aa7.7□□□□□ -1.18
SHMT2-223ENST00000556689 UBE2D4Q9Y2X8 147 aa7.7□□□□□ -1.18
SHMT2-223ENST00000556689 IFITM10A6NMD0 228 aa7.69□□□□□ -1.18
SHMT2-223ENST00000556689 AKR1D1P51857 326 aa7.69□□□□□ -1.18
SHMT2-223ENST00000556689 LINC00310P59036 64 aa7.69□□□□□ -1.18
SHMT2-223ENST00000556689 MRPS36P82909 103 aaKnown RBP7.69□□□□□ -1.18
SHMT2-223ENST00000556689 PHF5AQ7RTV0 110 aaKnown RBP7.69□□□□□ -1.18
SHMT2-223ENST00000556689 HIST3H2BBQ8N257 126 aa7.69□□□□□ -1.18
SHMT2-223ENST00000556689 VCX2Q9H322 139 aa7.69□□□□□ -1.18
SHMT2-223ENST00000556689 C5orf52A6NGY3 159 aa7.68□□□□□ -1.18
SHMT2-223ENST00000556689 COX7A2LO14548 114 aa7.68□□□□□ -1.18
SHMT2-223ENST00000556689 IGLV7-43P04211 117 aa7.68□□□□□ -1.18
SHMT2-223ENST00000556689 A0A0U1RQV1 116 aa7.67□□□□□ -1.18
SHMT2-223ENST00000556689 H0Y8G0 127 aa7.67□□□□□ -1.18
SHMT2-223ENST00000556689 KRTDAPP60985 99 aa7.67□□□□□ -1.18
SHMT2-223ENST00000556689 SEC11AP67812 179 aa7.67□□□□□ -1.18
SHMT2-223ENST00000556689 RPL18AQ02543 176 aaKnown RBP7.67□□□□□ -1.18
SHMT2-223ENST00000556689 PMVKQ15126 192 aa7.67□□□□□ -1.18
SHMT2-223ENST00000556689 Q6ZUT4 128 aa7.67□□□□□ -1.18
SHMT2-223ENST00000556689 C2orf48Q96LS8 159 aa7.67□□□□□ -1.18
SHMT2-223ENST00000556689 KRTAP9-2Q9BYQ4 174 aa7.67□□□□□ -1.18
SHMT2-223ENST00000556689 IGLV4-3A0A075B6K6 122 aa7.66□□□□□ -1.18
SHMT2-223ENST00000556689 A0A096LNJ9 63 aa7.66□□□□□ -1.18
SHMT2-223ENST00000556689 IGIPA6NJ69 53 aa7.66□□□□□ -1.18
SHMT2-223ENST00000556689 NUPR1O60356 82 aa7.66□□□□□ -1.18
SHMT2-223ENST00000556689 PRR4Q16378 134 aa7.66□□□□□ -1.18
SHMT2-223ENST00000556689 HIST1H2BLQ99880 126 aa7.66□□□□□ -1.18
SHMT2-223ENST00000556689 OPRPNQ99935 248 aaPredicted RBP7.66□□□□□ -1.18
SHMT2-223ENST00000556689 IGLV1-50A0A075B6I6 118 aa7.65□□□□□ -1.18
SHMT2-223ENST00000556689 A0A087WZ39 114 aa7.65□□□□□ -1.18
SHMT2-223ENST00000556689 H0Y9J4 135 aa7.65□□□□□ -1.18
SHMT2-223ENST00000556689 RNF151Q2KHN1 245 aa7.65□□□□□ -1.18
SHMT2-223ENST00000556689 TRAV12-1A0A0B4J245 112 aa7.64□□□□□ -1.19
SHMT2-223ENST00000556689 PLNP26678 52 aa7.64□□□□□ -1.19
SHMT2-223ENST00000556689 C5orf38Q86SI9 138 aa7.64□□□□□ -1.19
SHMT2-223ENST00000556689 GEMIN7Q9H840 131 aaKnown RBP7.64□□□□□ -1.19
SHMT2-223ENST00000556689 TRAV13-1A0A0B4J241 112 aa7.63□□□□□ -1.19
SHMT2-223ENST00000556689 SYS1-DBNDD2H3BUS1 97 aa7.63□□□□□ -1.19
SHMT2-223ENST00000556689 RNASE13Q5GAN3 156 aaKnown RBP7.63□□□□□ -1.19
SHMT2-223ENST00000556689 PET117Q6UWS5 81 aa7.63□□□□□ -1.19
SHMT2-223ENST00000556689 CHTOPQ9Y3Y2 248 aaKnown RBP7.63□□□□□ -1.19
SHMT2-223ENST00000556689 UBE2D1P51668 147 aa7.62□□□□□ -1.19
SHMT2-223ENST00000556689 HERVK_113P63121 156 aa7.62□□□□□ -1.19
SHMT2-223ENST00000556689 SPAG11BQ08648 103 aa7.62□□□□□ -1.19
SHMT2-223ENST00000556689 AMELXQ99217 191 aa7.62□□□□□ -1.19
SHMT2-223ENST00000556689 CST9LQ9H4G1 147 aa7.62□□□□□ -1.19
SHMT2-223ENST00000556689 F8VRH5 84 aa7.61□□□□□ -1.19
SHMT2-223ENST00000556689 H3BRM9 83 aa7.61□□□□□ -1.19
SHMT2-223ENST00000556689 KRTAP1-4P0C5Y4 121 aa7.61□□□□□ -1.19
SHMT2-223ENST00000556689 C3orf79P0CE67 100 aa7.61□□□□□ -1.19
SHMT2-223ENST00000556689 KRTAP11-1Q8IUC1 163 aa7.61□□□□□ -1.19
SHMT2-223ENST00000556689 OR10D4PQ8NGN7 298 aa7.61□□□□□ -1.19
SHMT2-223ENST00000556689 MRPL35Q9NZE8 188 aaKnown RBP7.61□□□□□ -1.19
SHMT2-223ENST00000556689 FAM168BA1KXE4 195 aa7.6□□□□□ -1.19
SHMT2-223ENST00000556689 F8WDY8 70 aa7.6□□□□□ -1.19
SHMT2-223ENST00000556689 DPM2O94777 84 aa7.6□□□□□ -1.19
SHMT2-223ENST00000556689 SCGB1D1O95968 90 aa7.6□□□□□ -1.19
SHMT2-223ENST00000556689 RPL13AP40429 203 aaKnown RBP7.6□□□□□ -1.19
SHMT2-223ENST00000556689 HERVK_113P61574 105 aa7.6□□□□□ -1.19
SHMT2-223ENST00000556689 LINC00173Q6ZV60 143 aa7.6□□□□□ -1.19
SHMT2-223ENST00000556689 HSBP1L1C9JCN9 74 aa7.59□□□□□ -1.19
SHMT2-223ENST00000556689 TINCRA0A1B0GVN0 87 aa7.58□□□□□ -1.2
SHMT2-223ENST00000556689 IGKCP01834 107 aa7.58□□□□□ -1.2
SHMT2-223ENST00000556689 TLX1NBP0CAT3 122 aa7.58□□□□□ -1.2
SHMT2-223ENST00000556689 FAM19A5Q7Z5A7 132 aaPredicted RBP7.58□□□□□ -1.2
SHMT2-223ENST00000556689 LINC00469Q8N7U9 141 aa7.58□□□□□ -1.2
SHMT2-223ENST00000556689 NDUFA1O15239 70 aa7.57□□□□□ -1.2
SHMT2-223ENST00000556689 IGLC3P0DOY3 106 aa7.57□□□□□ -1.2
SHMT2-223ENST00000556689 TMEM170BQ5T4T1 132 aa7.57□□□□□ -1.2
SHMT2-223ENST00000556689 LINC01545Q5VT33 79 aa7.57□□□□□ -1.2
SHMT2-223ENST00000556689 ORAOV1Q8WV07 137 aa7.57□□□□□ -1.2
SHMT2-223ENST00000556689 UBE2BP63146 152 aa7.56□□□□□ -1.2
SHMT2-223ENST00000556689 GAGE2EQ4V326 116 aa7.56□□□□□ -1.2
SHMT2-223ENST00000556689 C10orf25Q5T742 122 aa7.56□□□□□ -1.2
SHMT2-223ENST00000556689 UNQ6190/PRO20217Q6UXQ8 127 aa7.56□□□□□ -1.2
SHMT2-223ENST00000556689 GAGE2DQ9UEU5 116 aa7.56□□□□□ -1.2
SHMT2-223ENST00000556689 IGHV3OR16-9A0A0B4J2B5 98 aa7.55□□□□□ -1.2
SHMT2-223ENST00000556689 LINC00242Q5T6M2 205 aa7.55□□□□□ -1.2
SHMT2-223ENST00000556689 ZC2HC1BQ5TFG8 222 aa7.55□□□□□ -1.2
SHMT2-223ENST00000556689 FAM19A3Q7Z5A8 133 aa7.55□□□□□ -1.2
SHMT2-223ENST00000556689 M0QXV9 152 aa7.54□□□□□ -1.2
SHMT2-223ENST00000556689 TSPAN13O95857 204 aa7.54□□□□□ -1.2
SHMT2-223ENST00000556689 PRSS2P07478 247 aa7.54□□□□□ -1.2
SHMT2-223ENST00000556689 LCE2AQ5TA79 106 aaPredicted RBP7.54□□□□□ -1.2
SHMT2-223ENST00000556689 KRTAP7-1Q8IUC3 87 aa7.54□□□□□ -1.2
Retrieved 100 of 20,778 RNA–protein pairs in 62.2 ms