RNA–Protein interactions for RNA: ENST00000555774.5

SHMT2-222, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 1 (best)

Gene SHMT2, Length 2,311 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-222ENST00000555774 CD164L2Q6UWJ8 174 aa9.32□□□□□ -0.92
SHMT2-222ENST00000555774 NBPF19A0A087WUL8 3843 aa9.32□□□□□ -0.92
SHMT2-222ENST00000555774 APOC4P55056 127 aa9.31□□□□□ -0.92
SHMT2-222ENST00000555774 COX17Q14061 63 aa9.31□□□□□ -0.92
SHMT2-222ENST00000555774 PDZD2O15018 2839 aa9.31□□□□□ -0.92
SHMT2-222ENST00000555774 NOTCH3Q9UM47 2321 aa9.3□□□□□ -0.92
SHMT2-222ENST00000555774 NDUFC2O95298 119 aa9.3□□□□□ -0.92
SHMT2-222ENST00000555774 OR13C6PQ8NH95 151 aa9.3□□□□□ -0.92
SHMT2-222ENST00000555774 CCDC168Q8NDH2 2452 aa9.29□□□□□ -0.92
SHMT2-222ENST00000555774 A0A1B0GX51 115 aa9.29□□□□□ -0.92
SHMT2-222ENST00000555774 OBSCN-AS1Q96MR7 158 aa9.29□□□□□ -0.92
SHMT2-222ENST00000555774 C11orf68Q9H3H3 251 aaKnown RBP9.29□□□□□ -0.92
SHMT2-222ENST00000555774 KIAA0087Q14695 138 aa9.28□□□□□ -0.92
SHMT2-222ENST00000555774 CFAP161Q6P656 301 aa9.28□□□□□ -0.92
SHMT2-222ENST00000555774 SMCR5Q8TEV8 140 aa9.28□□□□□ -0.92
SHMT2-222ENST00000555774 IGHV4-28A0A0C4DH34 117 aa9.28□□□□□ -0.92
SHMT2-222ENST00000555774 SMR3AQ99954 134 aa9.28□□□□□ -0.92
SHMT2-222ENST00000555774 CUBNO60494 3623 aa9.27□□□□□ -0.92
SHMT2-222ENST00000555774 A0A096LPF7 62 aa9.27□□□□□ -0.92
SHMT2-222ENST00000555774 CLPSL2Q6UWE3 100 aa9.27□□□□□ -0.92
SHMT2-222ENST00000555774 LINC00269Q8N2A0 174 aa9.27□□□□□ -0.92
SHMT2-222ENST00000555774 CHCHD10Q8WYQ3 142 aaPredicted RBP9.27□□□□□ -0.92
SHMT2-222ENST00000555774 JMJD1CQ15652 2540 aa9.27□□□□□ -0.93
SHMT2-222ENST00000555774 LECT2O14960 151 aa9.27□□□□□ -0.93
SHMT2-222ENST00000555774 DAD1P61803 113 aa9.27□□□□□ -0.93
SHMT2-222ENST00000555774 MUC7Q8TAX7 377 aa9.27□□□□□ -0.93
SHMT2-222ENST00000555774 NF1P21359 2839 aa9.26□□□□□ -0.93
SHMT2-222ENST00000555774 MIFP14174 115 aa9.26□□□□□ -0.93
SHMT2-222ENST00000555774 REG3AQ06141 175 aa9.26□□□□□ -0.93
SHMT2-222ENST00000555774 DEFB135Q30KP9 77 aa9.26□□□□□ -0.93
SHMT2-222ENST00000555774 GAGE2AQ6NT46 116 aa9.26□□□□□ -0.93
SHMT2-222ENST00000555774 ATP5G1P05496 136 aa9.26□□□□□ -0.93
SHMT2-222ENST00000555774 LINC00167Q96N53 147 aa9.26□□□□□ -0.93
SHMT2-222ENST00000555774 ORMDL1Q9P0S3 153 aa9.25□□□□□ -0.93
SHMT2-222ENST00000555774 C2CD3Q4AC94 2353 aa9.25□□□□□ -0.93
SHMT2-222ENST00000555774 CCDC179H3BU77 68 aa9.25□□□□□ -0.93
SHMT2-222ENST00000555774 ANGP03950 147 aaKnown RBP9.25□□□□□ -0.93
SHMT2-222ENST00000555774 TMEM126AQ9H061 195 aa9.24□□□□□ -0.93
SHMT2-222ENST00000555774 KLK5Q9Y337 293 aaPredicted RBP9.24□□□□□ -0.93
SHMT2-222ENST00000555774 Q8NAQ8 132 aa9.23□□□□□ -0.93
SHMT2-222ENST00000555774 B5MCH6 92 aa9.23□□□□□ -0.93
SHMT2-222ENST00000555774 TENM4Q6N022 2769 aa9.23□□□□□ -0.93
SHMT2-222ENST00000555774 LELP1Q5T871 98 aa9.22□□□□□ -0.93
SHMT2-222ENST00000555774 SPATA3Q8NHX4 192 aa9.22□□□□□ -0.93
SHMT2-222ENST00000555774 FAM236AA0A1B0GUQ0 79 aa9.22□□□□□ -0.93
SHMT2-222ENST00000555774 FAM236BA0A1B0GV22 79 aa9.22□□□□□ -0.93
SHMT2-222ENST00000555774 SPART-AS1P0CW21 52 aa9.22□□□□□ -0.93
SHMT2-222ENST00000555774 NANOS2P60321 138 aaKnown RBP9.22□□□□□ -0.93
SHMT2-222ENST00000555774 C14orf132Q9NPU4 83 aa9.21□□□□□ -0.93
SHMT2-222ENST00000555774 DEFB4AO15263 64 aa9.21□□□□□ -0.94
SHMT2-222ENST00000555774 CELA1Q9UNI1 258 aa9.2□□□□□ -0.94
SHMT2-222ENST00000555774 ACANP16112 2415 aa9.2□□□□□ -0.94
SHMT2-222ENST00000555774 IGLV10-54A0A075B6I4 117 aa9.2□□□□□ -0.94
SHMT2-222ENST00000555774 C9orf129Q5T035 196 aaKnown RBP9.2□□□□□ -0.94
SHMT2-222ENST00000555774 Q8N814 137 aa9.2□□□□□ -0.94
SHMT2-222ENST00000555774 JMJD7-PLA2G4BH0Y9G9 81 aa9.19□□□□□ -0.94
SHMT2-222ENST00000555774 MTORP42345 2549 aa9.19□□□□□ -0.94
SHMT2-222ENST00000555774 SETD2Q9BYW2 2564 aaPredicted RBP9.19□□□□□ -0.94
SHMT2-222ENST00000555774 NIPBLQ6KC79 2804 aaeCLIP9.18□□□□□ -0.94
SHMT2-222ENST00000555774 HIVEP2P31629 2446 aa9.18□□□□□ -0.94
SHMT2-222ENST00000555774 WIPF1O43516 503 aa9.18□□□□□ -0.94
SHMT2-222ENST00000555774 SPAG11BQ08648 103 aa9.18□□□□□ -0.94
SHMT2-222ENST00000555774 Q6JHZ5 121 aa9.18□□□□□ -0.94
SHMT2-222ENST00000555774 Q8N3U1 123 aa9.18□□□□□ -0.94
SHMT2-222ENST00000555774 PRR34Q9NV39 138 aa9.18□□□□□ -0.94
SHMT2-222ENST00000555774 SS18L2Q9UHA2 77 aa9.18□□□□□ -0.94
SHMT2-222ENST00000555774 A0A0J9YWU9 116 aa9.17□□□□□ -0.94
SHMT2-222ENST00000555774 INAFM1C9JVW0 142 aa9.17□□□□□ -0.94
SHMT2-222ENST00000555774 TMEM256-PLSCR3K7ERE1 68 aa9.17□□□□□ -0.94
SHMT2-222ENST00000555774 NCR3O14931 201 aa9.17□□□□□ -0.94
SHMT2-222ENST00000555774 SLPIP03973 132 aa9.17□□□□□ -0.94
SHMT2-222ENST00000555774 IGHV4-30-4P0DP06 118 aa9.17□□□□□ -0.94
SHMT2-222ENST00000555774 WFDC9Q8NEX5 89 aa9.17□□□□□ -0.94
SHMT2-222ENST00000555774 PRR3P79522 188 aaKnown RBP9.16□□□□□ -0.94
SHMT2-222ENST00000555774 GVQW2A0A096LPI5 108 aaPredicted RBP9.16□□□□□ -0.94
SHMT2-222ENST00000555774 CCKP06307 115 aa9.16□□□□□ -0.94
SHMT2-222ENST00000555774 C9orf116Q5BN46 136 aaPredicted RBP9.15□□□□□ -0.94
SHMT2-222ENST00000555774 HIST1H4AP62805 103 aaKnown RBP9.15□□□□□ -0.95
SHMT2-222ENST00000555774 S100A7L2Q5SY68 101 aa9.15□□□□□ -0.95
SHMT2-222ENST00000555774 LINC00846Q9NV44 126 aa9.15□□□□□ -0.95
SHMT2-222ENST00000555774 UNC79Q9P2D8 2635 aa9.14□□□□□ -0.95
SHMT2-222ENST00000555774 HTN3P15516 51 aa9.14□□□□□ -0.95
SHMT2-222ENST00000555774 C6orf99Q4VX62 202 aa9.13□□□□□ -0.95
SHMT2-222ENST00000555774 UNQ6190/PRO20217Q6UXQ8 127 aa9.13□□□□□ -0.95
SHMT2-222ENST00000555774 CYSRT1A8MQ03 144 aa9.13□□□□□ -0.95
SHMT2-222ENST00000555774 LINC00575Q6W349 94 aa9.13□□□□□ -0.95
SHMT2-222ENST00000555774 ATOX1O00244 68 aa9.12□□□□□ -0.95
SHMT2-222ENST00000555774 C10orf25Q5T742 122 aa9.12□□□□□ -0.95
SHMT2-222ENST00000555774 C3orf22Q8N5N4 141 aa9.12□□□□□ -0.95
SHMT2-222ENST00000555774 Q8NDZ9 215 aa9.12□□□□□ -0.95
SHMT2-222ENST00000555774 KLK12Q9UKR0 248 aa9.12□□□□□ -0.95
SHMT2-222ENST00000555774 H3BNG1 76 aa9.11□□□□□ -0.95
SHMT2-222ENST00000555774 H3BQ85 93 aa9.11□□□□□ -0.95
SHMT2-222ENST00000555774 UQCRQO14949 82 aa9.11□□□□□ -0.95
SHMT2-222ENST00000555774 ENHOQ6UWT2 76 aa9.11□□□□□ -0.95
SHMT2-222ENST00000555774 C6orf223Q8N319 242 aa9.11□□□□□ -0.95
SHMT2-222ENST00000555774 IGLV6-57P01721 117 aa9.11□□□□□ -0.95
SHMT2-222ENST00000555774 LYPD5Q6UWN5 251 aa9.11□□□□□ -0.95
SHMT2-222ENST00000555774 ITPR2Q14571 2701 aa9.1□□□□□ -0.95
SHMT2-222ENST00000555774 ATP5EP2Q5VTU8 51 aa9.1□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 71.2 ms