RNA–Protein interactions for RNA: ENST00000553427.5

CPSF2-202, Transcript of cleavage and polyadenylation specific factor 2, humanhuman

TSL 4

Gene CPSF2, Length 715 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF2-202ENST00000553427 SMIM1B2RUZ4 78 aa11.64□□□□□ -0.55
CPSF2-202ENST00000553427 PRSS2P07478 247 aa11.64□□□□□ -0.55
CPSF2-202ENST00000553427 IGLC3P0DOY3 106 aa11.64□□□□□ -0.55
CPSF2-202ENST00000553427 RPL37AP61513 92 aaKnown RBP11.63□□□□□ -0.55
CPSF2-202ENST00000553427 GAGE2BQ13066 116 aa11.63□□□□□ -0.55
CPSF2-202ENST00000553427 BAGE3Q86Y29 109 aa11.63□□□□□ -0.55
CPSF2-202ENST00000553427 RPL18AQ02543 176 aaKnown RBP11.62□□□□□ -0.55
CPSF2-202ENST00000553427 C2orf82Q6UX34 121 aa11.62□□□□□ -0.55
CPSF2-202ENST00000553427 HSBP1O75506 76 aa11.61□□□□□ -0.55
CPSF2-202ENST00000553427 CXCL5P42830 114 aa11.61□□□□□ -0.55
CPSF2-202ENST00000553427 C6orf226Q5I0X4 101 aa11.61□□□□□ -0.55
CPSF2-202ENST00000553427 TOMM7Q9P0U1 55 aa11.61□□□□□ -0.55
CPSF2-202ENST00000553427 FLG2Q5D862 2391 aaPredicted RBP11.6□□□□□ -0.55
CPSF2-202ENST00000553427 H3BRM9 83 aa11.6□□□□□ -0.55
CPSF2-202ENST00000553427 NDUFA6P56556 154 aa11.6□□□□□ -0.55
CPSF2-202ENST00000553427 CKS1BP61024 79 aa11.6□□□□□ -0.55
CPSF2-202ENST00000553427 C7orf33Q8WU49 177 aa11.6□□□□□ -0.55
CPSF2-202ENST00000553427 Q6ZRP5 223 aa11.59□□□□□ -0.55
CPSF2-202ENST00000553427 TRAV12-1A0A0B4J245 112 aa11.58□□□□□ -0.56
CPSF2-202ENST00000553427 NDUFC2-KCTD14E9PQ53 114 aa11.58□□□□□ -0.56
CPSF2-202ENST00000553427 F8VRH5 84 aa11.58□□□□□ -0.56
CPSF2-202ENST00000553427 LINC00310P59036 64 aa11.58□□□□□ -0.56
CPSF2-202ENST00000553427 IFI27L1Q96BM0 104 aa11.58□□□□□ -0.56
CPSF2-202ENST00000553427 IGLV5-39A0A0G2JS06 123 aa11.57□□□□□ -0.56
CPSF2-202ENST00000553427 SCO1O75880 301 aa11.57□□□□□ -0.56
CPSF2-202ENST00000553427 SERF1AO75920 110 aa11.57□□□□□ -0.56
CPSF2-202ENST00000553427 ZNF22P17026 224 aaPredicted RBP11.57□□□□□ -0.56
CPSF2-202ENST00000553427 COX7B2Q8TF08 81 aa11.57□□□□□ -0.56
CPSF2-202ENST00000553427 A0A1W2PNN7 141 aa11.56□□□□□ -0.56
CPSF2-202ENST00000553427 SPINK8P0C7L1 97 aa11.56□□□□□ -0.56
CPSF2-202ENST00000553427 C9orf116Q5BN46 136 aaPredicted RBP11.56□□□□□ -0.56
CPSF2-202ENST00000553427 C11orf86A6NJI1 115 aa11.55□□□□□ -0.56
CPSF2-202ENST00000553427 FAM19A2Q8N3H0 131 aa11.55□□□□□ -0.56
CPSF2-202ENST00000553427 CHTOPQ9Y3Y2 248 aaKnown RBP11.54□□□□□ -0.56
CPSF2-202ENST00000553427 DMBT1Q9UGM3 2413 aaPredicted RBP11.52□□□□□ -0.57
CPSF2-202ENST00000553427 FAT3Q8TDW7 4589 aa11.51□□□□□ -0.57
CPSF2-202ENST00000553427 LEPROTL1O95214 131 aa11.51□□□□□ -0.57
CPSF2-202ENST00000553427 PRR3P79522 188 aaKnown RBP11.51□□□□□ -0.57
CPSF2-202ENST00000553427 GAGE2EQ4V326 116 aa11.51□□□□□ -0.57
CPSF2-202ENST00000553427 GAGE2DQ9UEU5 116 aa11.51□□□□□ -0.57
CPSF2-202ENST00000553427 TMEM170BQ5T4T1 132 aa11.5□□□□□ -0.57
CPSF2-202ENST00000553427 HSPB8Q9UJY1 196 aa11.5□□□□□ -0.57
CPSF2-202ENST00000553427 NUPR1O60356 82 aa11.49□□□□□ -0.57
CPSF2-202ENST00000553427 HIST1H2BKO60814 126 aa11.49□□□□□ -0.57
CPSF2-202ENST00000553427 HIST1H2BJP06899 126 aa11.49□□□□□ -0.57
CPSF2-202ENST00000553427 HIST1H2BOP23527 126 aa11.49□□□□□ -0.57
CPSF2-202ENST00000553427 HIST1H2BBP33778 126 aa11.49□□□□□ -0.57
CPSF2-202ENST00000553427 HNRNPA3P51991 378 aaKnown RBP11.49□□□□□ -0.57
CPSF2-202ENST00000553427 HIST1H2BDP58876 126 aa11.49□□□□□ -0.57
CPSF2-202ENST00000553427 HIST1H2BCP62807 126 aa11.49□□□□□ -0.57
CPSF2-202ENST00000553427 ODF1Q14990 250 aa11.49□□□□□ -0.57
CPSF2-202ENST00000553427 HIST2H2BEQ16778 126 aa11.49□□□□□ -0.57
CPSF2-202ENST00000553427 HIST2H2BFQ5QNW6 126 aaPredicted RBP11.49□□□□□ -0.57
CPSF2-202ENST00000553427 HIST1H2BHQ93079 126 aa11.49□□□□□ -0.57
CPSF2-202ENST00000553427 HIST1H2BNQ99877 126 aa11.49□□□□□ -0.57
CPSF2-202ENST00000553427 HIST1H2BMQ99879 126 aa11.49□□□□□ -0.57
CPSF2-202ENST00000553427 C9orf129Q5T035 196 aaKnown RBP11.48□□□□□ -0.57
CPSF2-202ENST00000553427 SFTA2Q6UW10 78 aa11.48□□□□□ -0.57
CPSF2-202ENST00000553427 LRP1Q07954 4544 aaKnown RBP11.47□□□□□ -0.57
CPSF2-202ENST00000553427 FAM168BA1KXE4 195 aa11.47□□□□□ -0.57
CPSF2-202ENST00000553427 KRTAP29-1A8MX34 341 aaPredicted RBP11.46□□□□□ -0.57
CPSF2-202ENST00000553427 KRTAP7-1Q8IUC3 87 aa11.46□□□□□ -0.57
CPSF2-202ENST00000553427 TMEM223A0PJW6 202 aa11.45□□□□□ -0.58
CPSF2-202ENST00000553427 PHF5AQ7RTV0 110 aaKnown RBP11.45□□□□□ -0.58
CPSF2-202ENST00000553427 FAM19A5Q7Z5A7 132 aaPredicted RBP11.45□□□□□ -0.58
CPSF2-202ENST00000553427 HERC1Q15751 4861 aa11.44□□□□□ -0.58
CPSF2-202ENST00000553427 S100A1P23297 94 aa11.44□□□□□ -0.58
CPSF2-202ENST00000553427 OXTP01178 125 aa11.43□□□□□ -0.58
CPSF2-202ENST00000553427 M0QXV9 152 aa11.42□□□□□ -0.58
CPSF2-202ENST00000553427 FABP4P15090 132 aa11.42□□□□□ -0.58
CPSF2-202ENST00000553427 PLNP26678 52 aa11.42□□□□□ -0.58
CPSF2-202ENST00000553427 COA6Q5JTJ3 125 aaKnown RBP11.42□□□□□ -0.58
CPSF2-202ENST00000553427 ZNF625Q96I27 306 aaPredicted RBP11.42□□□□□ -0.58
CPSF2-202ENST00000553427 XAGE1AQ9HD64 81 aa11.42□□□□□ -0.58
CPSF2-202ENST00000553427 COX17Q14061 63 aa11.41□□□□□ -0.58
CPSF2-202ENST00000553427 PSORS1C2Q9UIG4 136 aa11.41□□□□□ -0.58
CPSF2-202ENST00000553427 H0Y8G0 127 aa11.4□□□□□ -0.58
CPSF2-202ENST00000553427 SERTAD4-AS1Q5TG53 156 aa11.4□□□□□ -0.58
CPSF2-202ENST00000553427 MAP1LC3CQ9BXW4 147 aa11.4□□□□□ -0.58
CPSF2-202ENST00000553427 ERG28Q9UKR5 140 aa11.4□□□□□ -0.58
CPSF2-202ENST00000553427 PLA2G2DQ9UNK4 145 aa11.4□□□□□ -0.58
CPSF2-202ENST00000553427 TP73-AS1Q9UF72 201 aa11.39□□□□□ -0.59
CPSF2-202ENST00000553427 ATP6V1G1O75348 118 aa11.38□□□□□ -0.59
CPSF2-202ENST00000553427 DPM2O94777 84 aa11.38□□□□□ -0.59
CPSF2-202ENST00000553427 SRSF9Q13242 221 aaKnown RBP eCLIP11.37□□□□□ -0.59
CPSF2-202ENST00000553427 SPINK6Q6UWN8 80 aa11.37□□□□□ -0.59
CPSF2-202ENST00000553427 IGLV5-37A0A075B6J1 123 aa11.36□□□□□ -0.59
CPSF2-202ENST00000553427 J3QL48 77 aa11.36□□□□□ -0.59
CPSF2-202ENST00000553427 LBHQ53QV2 105 aaPredicted RBP11.36□□□□□ -0.59
CPSF2-202ENST00000553427 C22orf24Q9Y442 160 aa11.36□□□□□ -0.59
CPSF2-202ENST00000553427 PFN2P35080 140 aa11.35□□□□□ -0.59
CPSF2-202ENST00000553427 KRTAP11-1Q8IUC1 163 aa11.35□□□□□ -0.59
CPSF2-202ENST00000553427 IGKCP01834 107 aa11.34□□□□□ -0.59
CPSF2-202ENST00000553427 UBE2BP63146 152 aa11.34□□□□□ -0.59
CPSF2-202ENST00000553427 C1orf137Q5JT78 98 aa11.34□□□□□ -0.59
CPSF2-202ENST00000553427 SYS1-DBNDD2H3BUS1 97 aa11.33□□□□□ -0.6
CPSF2-202ENST00000553427 HERVK_113P61574 105 aa11.33□□□□□ -0.6
CPSF2-202ENST00000553427 HERV-K104P63124 156 aa11.33□□□□□ -0.6
CPSF2-202ENST00000553427 MRPL55Q7Z7F7 128 aaKnown RBP11.33□□□□□ -0.6
CPSF2-202ENST00000553427 SND1-IT1Q9HBX3 110 aa11.33□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 63.1 ms