RNA–Protein interactions for RNA: ENST00000552301.1

PRPF40B-216, Transcript of pre-mRNA processing factor 40 homolog B, humanhuman

TSL 5

Gene PRPF40B, Length 912 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40B-216ENST00000552301 Q8IZM0 81 aa11.71□□□□□ -0.53
PRPF40B-216ENST00000552301 C7orf33Q8WU49 177 aa11.71□□□□□ -0.53
PRPF40B-216ENST00000552301 TRBV30A0A0K0K1B3 111 aa11.7□□□□□ -0.54
PRPF40B-216ENST00000552301 H3BRM9 83 aa11.7□□□□□ -0.54
PRPF40B-216ENST00000552301 C2orf82Q6UX34 121 aa11.7□□□□□ -0.54
PRPF40B-216ENST00000552301 C6orf48Q9UBA6 75 aa11.7□□□□□ -0.54
PRPF40B-216ENST00000552301 IGLV5-45A0A087WSX0 123 aa11.69□□□□□ -0.54
PRPF40B-216ENST00000552301 SCO1O75880 301 aa11.68□□□□□ -0.54
PRPF40B-216ENST00000552301 IGLC3P0DOY3 106 aa11.68□□□□□ -0.54
PRPF40B-216ENST00000552301 SMIM1B2RUZ4 78 aa11.67□□□□□ -0.54
PRPF40B-216ENST00000552301 CXCL5P42830 114 aa11.67□□□□□ -0.54
PRPF40B-216ENST00000552301 SPINK8P0C7L1 97 aa11.66□□□□□ -0.54
PRPF40B-216ENST00000552301 TLX1NBP0CAT3 122 aa11.66□□□□□ -0.54
PRPF40B-216ENST00000552301 IFI27L1Q96BM0 104 aa11.66□□□□□ -0.54
PRPF40B-216ENST00000552301 VPS13BQ7Z7G8 4022 aa11.66□□□□□ -0.54
PRPF40B-216ENST00000552301 SERF1AO75920 110 aa11.65□□□□□ -0.54
PRPF40B-216ENST00000552301 FAM19A2Q8N3H0 131 aa11.65□□□□□ -0.54
PRPF40B-216ENST00000552301 COX7B2Q8TF08 81 aa11.65□□□□□ -0.54
PRPF40B-216ENST00000552301 HERC1Q15751 4861 aa11.65□□□□□ -0.55
PRPF40B-216ENST00000552301 GAGE2EQ4V326 116 aa11.64□□□□□ -0.55
PRPF40B-216ENST00000552301 GAGE2DQ9UEU5 116 aa11.64□□□□□ -0.55
PRPF40B-216ENST00000552301 FLG2Q5D862 2391 aaPredicted RBP11.64□□□□□ -0.55
PRPF40B-216ENST00000552301 F8VRH5 84 aa11.63□□□□□ -0.55
PRPF40B-216ENST00000552301 ZNF22P17026 224 aaPredicted RBP11.63□□□□□ -0.55
PRPF40B-216ENST00000552301 Q6ZRP5 223 aa11.63□□□□□ -0.55
PRPF40B-216ENST00000552301 CHTOPQ9Y3Y2 248 aaKnown RBP11.63□□□□□ -0.55
PRPF40B-216ENST00000552301 NDUFC2-KCTD14E9PQ53 114 aa11.62□□□□□ -0.55
PRPF40B-216ENST00000552301 C9orf116Q5BN46 136 aaPredicted RBP11.62□□□□□ -0.55
PRPF40B-216ENST00000552301 TMEM170BQ5T4T1 132 aa11.62□□□□□ -0.55
PRPF40B-216ENST00000552301 LEPROTL1O95214 131 aa11.61□□□□□ -0.55
PRPF40B-216ENST00000552301 KRTAP10-4P60372 401 aaPredicted RBP11.61□□□□□ -0.55
PRPF40B-216ENST00000552301 SRRM2Q9UQ35 2752 aaKnown RBP11.6□□□□□ -0.55
PRPF40B-216ENST00000552301 TRAV12-1A0A0B4J245 112 aa11.6□□□□□ -0.55
PRPF40B-216ENST00000552301 A0A1W2PNN7 141 aa11.6□□□□□ -0.55
PRPF40B-216ENST00000552301 C11orf86A6NJI1 115 aa11.6□□□□□ -0.55
PRPF40B-216ENST00000552301 H0Y8G0 127 aa11.58□□□□□ -0.56
PRPF40B-216ENST00000552301 LINC00310P59036 64 aa11.58□□□□□ -0.56
PRPF40B-216ENST00000552301 HSPB8Q9UJY1 196 aa11.58□□□□□ -0.56
PRPF40B-216ENST00000552301 IGLV5-39A0A0G2JS06 123 aa11.57□□□□□ -0.56
PRPF40B-216ENST00000552301 FAM19A5Q7Z5A7 132 aaPredicted RBP11.56□□□□□ -0.56
PRPF40B-216ENST00000552301 FABP4P15090 132 aa11.55□□□□□ -0.56
PRPF40B-216ENST00000552301 PRR3P79522 188 aaKnown RBP11.55□□□□□ -0.56
PRPF40B-216ENST00000552301 FAM168BA1KXE4 195 aa11.54□□□□□ -0.56
PRPF40B-216ENST00000552301 NUPR1O60356 82 aa11.54□□□□□ -0.56
PRPF40B-216ENST00000552301 HIST1H2BKO60814 126 aa11.54□□□□□ -0.56
PRPF40B-216ENST00000552301 HIST1H2BJP06899 126 aa11.54□□□□□ -0.56
PRPF40B-216ENST00000552301 HIST1H2BOP23527 126 aa11.54□□□□□ -0.56
PRPF40B-216ENST00000552301 HIST1H2BBP33778 126 aa11.54□□□□□ -0.56
PRPF40B-216ENST00000552301 HIST1H2BDP58876 126 aa11.54□□□□□ -0.56
PRPF40B-216ENST00000552301 HIST1H2BCP62807 126 aa11.54□□□□□ -0.56
PRPF40B-216ENST00000552301 HIST2H2BEQ16778 126 aa11.54□□□□□ -0.56
PRPF40B-216ENST00000552301 HIST2H2BFQ5QNW6 126 aaPredicted RBP11.54□□□□□ -0.56
PRPF40B-216ENST00000552301 HIST1H2BHQ93079 126 aa11.54□□□□□ -0.56
PRPF40B-216ENST00000552301 HIST1H2BNQ99877 126 aa11.54□□□□□ -0.56
PRPF40B-216ENST00000552301 HIST1H2BMQ99879 126 aa11.54□□□□□ -0.56
PRPF40B-216ENST00000552301 PHF5AQ7RTV0 110 aaKnown RBP11.53□□□□□ -0.56
PRPF40B-216ENST00000552301 S100A1P23297 94 aa11.52□□□□□ -0.57
PRPF40B-216ENST00000552301 C9orf129Q5T035 196 aaKnown RBP11.52□□□□□ -0.57
PRPF40B-216ENST00000552301 SFTA2Q6UW10 78 aa11.52□□□□□ -0.57
PRPF40B-216ENST00000552301 XAGE1AQ9HD64 81 aa11.52□□□□□ -0.57
PRPF40B-216ENST00000552301 M0QXV9 152 aa11.51□□□□□ -0.57
PRPF40B-216ENST00000552301 HNRNPA3P51991 378 aaKnown RBP11.51□□□□□ -0.57
PRPF40B-216ENST00000552301 ODF1Q14990 250 aa11.51□□□□□ -0.57
PRPF40B-216ENST00000552301 MYCBP2O75592 4640 aa11.5□□□□□ -0.57
PRPF40B-216ENST00000552301 TMEM223A0PJW6 202 aa11.5□□□□□ -0.57
PRPF40B-216ENST00000552301 J3QL48 77 aa11.49□□□□□ -0.57
PRPF40B-216ENST00000552301 MAP1LC3CQ9BXW4 147 aa11.49□□□□□ -0.57
PRPF40B-216ENST00000552301 ATP6V1G1O75348 118 aa11.48□□□□□ -0.57
PRPF40B-216ENST00000552301 PLNP26678 52 aa11.48□□□□□ -0.57
PRPF40B-216ENST00000552301 PFN2P35080 140 aa11.48□□□□□ -0.57
PRPF40B-216ENST00000552301 UBE2BP63146 152 aa11.48□□□□□ -0.57
PRPF40B-216ENST00000552301 DMBT1Q9UGM3 2413 aaPredicted RBP11.48□□□□□ -0.57
PRPF40B-216ENST00000552301 ERG28Q9UKR5 140 aa11.47□□□□□ -0.57
PRPF40B-216ENST00000552301 DPM2O94777 84 aa11.46□□□□□ -0.57
PRPF40B-216ENST00000552301 ZNF625Q96I27 306 aaPredicted RBP11.46□□□□□ -0.57
PRPF40B-216ENST00000552301 PSORS1C2Q9UIG4 136 aa11.46□□□□□ -0.57
PRPF40B-216ENST00000552301 HERVK_113P61574 105 aa11.45□□□□□ -0.58
PRPF40B-216ENST00000552301 SERTAD4-AS1Q5TG53 156 aa11.45□□□□□ -0.58
PRPF40B-216ENST00000552301 KRTAP29-1A8MX34 341 aaPredicted RBP11.44□□□□□ -0.58
PRPF40B-216ENST00000552301 OXTP01178 125 aa11.44□□□□□ -0.58
PRPF40B-216ENST00000552301 COX17Q14061 63 aa11.44□□□□□ -0.58
PRPF40B-216ENST00000552301 C1orf137Q5JT78 98 aa11.44□□□□□ -0.58
PRPF40B-216ENST00000552301 KRTAP7-1Q8IUC3 87 aa11.44□□□□□ -0.58
PRPF40B-216ENST00000552301 IGKCP01834 107 aa11.43□□□□□ -0.58
PRPF40B-216ENST00000552301 LBHQ53QV2 105 aaPredicted RBP11.43□□□□□ -0.58
PRPF40B-216ENST00000552301 PMCHL2Q9BQD1 86 aa11.43□□□□□ -0.58
PRPF40B-216ENST00000552301 C22orf24Q9Y442 160 aa11.42□□□□□ -0.58
PRPF40B-216ENST00000552301 PKHD1L1Q86WI1 4243 aa11.4□□□□□ -0.58
PRPF40B-216ENST00000552301 SYS1-DBNDD2H3BUS1 97 aa11.4□□□□□ -0.58
PRPF40B-216ENST00000552301 LINC00158P58513 81 aa11.4□□□□□ -0.58
PRPF40B-216ENST00000552301 MEIG1Q5JSS6 88 aa11.4□□□□□ -0.58
PRPF40B-216ENST00000552301 COA6Q5JTJ3 125 aaKnown RBP11.4□□□□□ -0.58
PRPF40B-216ENST00000552301 SPINK6Q6UWN8 80 aa11.4□□□□□ -0.58
PRPF40B-216ENST00000552301 NKAPP1Q8N9T2 125 aa11.4□□□□□ -0.58
PRPF40B-216ENST00000552301 PLEKHB2Q96CS7 222 aa11.4□□□□□ -0.58
PRPF40B-216ENST00000552301 TP73-AS1Q9UF72 201 aa11.4□□□□□ -0.58
PRPF40B-216ENST00000552301 NDUFA12Q9UI09 145 aa11.4□□□□□ -0.58
PRPF40B-216ENST00000552301 HERV-K104P63124 156 aa11.39□□□□□ -0.59
PRPF40B-216ENST00000552301 MRPL55Q7Z7F7 128 aaKnown RBP11.39□□□□□ -0.59
PRPF40B-216ENST00000552301 SND1-IT1Q9HBX3 110 aa11.39□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 63 ms