RNA–Protein interactions for RNA: ENST00000549578.5

VPS29-206, Transcript of VPS29, retromer complex component, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS29, Length 1,523 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-206ENST00000549578 C10orf25Q5T742 122 aa13.69□□□□□ -0.22
VPS29-206ENST00000549578 UNQ6190/PRO20217Q6UXQ8 127 aa13.69□□□□□ -0.22
VPS29-206ENST00000549578 C20orf202A1L168 122 aa13.69□□□□□ -0.22
VPS29-206ENST00000549578 NDUFA1O15239 70 aa13.69□□□□□ -0.22
VPS29-206ENST00000549578 KRTAP10-1P60331 282 aa13.69□□□□□ -0.22
VPS29-206ENST00000549578 CKS1BP61024 79 aa13.68□□□□□ -0.22
VPS29-206ENST00000549578 F8WDY8 70 aa13.67□□□□□ -0.22
VPS29-206ENST00000549578 LRP1BQ9NZR2 4599 aa13.67□□□□□ -0.22
VPS29-206ENST00000549578 C6orf48Q9UBA6 75 aa13.65□□□□□ -0.22
VPS29-206ENST00000549578 ATOH7Q8N100 152 aa13.64□□□□□ -0.23
VPS29-206ENST00000549578 CXCL5P42830 114 aa13.64□□□□□ -0.23
VPS29-206ENST00000549578 HERVK_113P61574 105 aa13.64□□□□□ -0.23
VPS29-206ENST00000549578 SDIM1Q6ZPB5 146 aa13.63□□□□□ -0.23
VPS29-206ENST00000549578 STPG4Q8N801 248 aa13.62□□□□□ -0.23
VPS29-206ENST00000549578 C9orf116Q5BN46 136 aaPredicted RBP13.61□□□□□ -0.23
VPS29-206ENST00000549578 TRBV30A0A0K0K1B3 111 aa13.6□□□□□ -0.23
VPS29-206ENST00000549578 TSPEAR-AS2P59090 65 aa13.6□□□□□ -0.23
VPS29-206ENST00000549578 RNF151Q2KHN1 245 aa13.6□□□□□ -0.23
VPS29-206ENST00000549578 LEPROTO15243 131 aa13.59□□□□□ -0.23
VPS29-206ENST00000549578 FAM30AQ9NZY2 134 aa13.59□□□□□ -0.23
VPS29-206ENST00000549578 E9PLD3 99 aa13.58□□□□□ -0.24
VPS29-206ENST00000549578 SCGB1D1O95968 90 aa13.58□□□□□ -0.24
VPS29-206ENST00000549578 PLEKHB2Q96CS7 222 aa13.58□□□□□ -0.24
VPS29-206ENST00000549578 LOC107984640A0A0U1RRK4 108 aa13.57□□□□□ -0.24
VPS29-206ENST00000549578 J3QQQ9 107 aa13.57□□□□□ -0.24
VPS29-206ENST00000549578 CHTF8P0CG12 524 aa13.57□□□□□ -0.24
VPS29-206ENST00000549578 AKR1D1P51857 326 aa13.57□□□□□ -0.24
VPS29-206ENST00000549578 ZNF625Q96I27 306 aaPredicted RBP13.57□□□□□ -0.24
VPS29-206ENST00000549578 A0A096LNI7 61 aa13.56□□□□□ -0.24
VPS29-206ENST00000549578 PANO1I0J062 215 aa13.56□□□□□ -0.24
VPS29-206ENST00000549578 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP13.56□□□□□ -0.24
VPS29-206ENST00000549578 DNAH8Q96JB1 4490 aa13.55□□□□□ -0.24
VPS29-206ENST00000549578 IGKV2-24A0A0C4DH68 120 aa13.55□□□□□ -0.24
VPS29-206ENST00000549578 RPL18AQ02543 176 aaKnown RBP13.55□□□□□ -0.24
VPS29-206ENST00000549578 NDUFA12Q9UI09 145 aa13.55□□□□□ -0.24
VPS29-206ENST00000549578 Q6ZSA8 131 aa13.54□□□□□ -0.24
VPS29-206ENST00000549578 IGKV2D-26A0A0A0MRZ7 120 aa13.54□□□□□ -0.24
VPS29-206ENST00000549578 LGALS3P17931 250 aaKnown RBP13.54□□□□□ -0.24
VPS29-206ENST00000549578 GAGE2BQ13066 116 aa13.54□□□□□ -0.24
VPS29-206ENST00000549578 MAJINQ3KP22 176 aa13.54□□□□□ -0.24
VPS29-206ENST00000549578 ANKRD39Q53RE8 183 aa13.54□□□□□ -0.24
VPS29-206ENST00000549578 SFTA2Q6UW10 78 aa13.54□□□□□ -0.24
VPS29-206ENST00000549578 PKIGQ9Y2B9 76 aa13.54□□□□□ -0.24
VPS29-206ENST00000549578 BIRC6Q9NR09 4857 aa13.53□□□□□ -0.24
VPS29-206ENST00000549578 NDUFC2-KCTD14E9PQ53 114 aa13.53□□□□□ -0.24
VPS29-206ENST00000549578 TLX1NBP0CAT3 122 aa13.53□□□□□ -0.24
VPS29-206ENST00000549578 HAMPP81172 84 aa13.53□□□□□ -0.24
VPS29-206ENST00000549578 Q6ZRP5 223 aa13.53□□□□□ -0.24
VPS29-206ENST00000549578 APOBP04114 4563 aaKnown RBP13.52□□□□□ -0.24
VPS29-206ENST00000549578 PTTG1IPP53801 180 aa13.52□□□□□ -0.25
VPS29-206ENST00000549578 MYMXA0A1B0GTQ4 84 aa13.5□□□□□ -0.25
VPS29-206ENST00000549578 PFN2P35080 140 aa13.5□□□□□ -0.25
VPS29-206ENST00000549578 JOSD1Q15040 202 aaPredicted RBP13.5□□□□□ -0.25
VPS29-206ENST00000549578 GAGE2EQ4V326 116 aa13.5□□□□□ -0.25
VPS29-206ENST00000549578 SPACA4Q8TDM5 124 aa13.5□□□□□ -0.25
VPS29-206ENST00000549578 GAGE2DQ9UEU5 116 aa13.5□□□□□ -0.25
VPS29-206ENST00000549578 ERG28Q9UKR5 140 aa13.5□□□□□ -0.25
VPS29-206ENST00000549578 CIRBPQ14011 172 aaKnown RBP13.49□□□□□ -0.25
VPS29-206ENST00000549578 NMUP48645 174 aa13.49□□□□□ -0.25
VPS29-206ENST00000549578 TTTY13Q9BZ97 58 aa13.49□□□□□ -0.25
VPS29-206ENST00000549578 XGP55808 180 aa13.48□□□□□ -0.25
VPS29-206ENST00000549578 HERV-K104P63124 156 aa13.48□□□□□ -0.25
VPS29-206ENST00000549578 DPH3Q96FX2 82 aa13.48□□□□□ -0.25
VPS29-206ENST00000549578 HSBP1L1C9JCN9 74 aa13.47□□□□□ -0.25
VPS29-206ENST00000549578 SCXQ7RTU7 201 aa13.46□□□□□ -0.25
VPS29-206ENST00000549578 LINC00474Q9P2X8 69 aa13.46□□□□□ -0.25
VPS29-206ENST00000549578 KIAA1109Q2LD37 5005 aa13.46□□□□□ -0.26
VPS29-206ENST00000549578 A0A0U1RRA0 63 aa13.45□□□□□ -0.26
VPS29-206ENST00000549578 PYY3Q5JQD4 70 aa13.45□□□□□ -0.26
VPS29-206ENST00000549578 MEIG1Q5JSS6 88 aa13.45□□□□□ -0.26
VPS29-206ENST00000549578 CDK2AP2O75956 126 aa13.44□□□□□ -0.26
VPS29-206ENST00000549578 CIRBP-AS1Q8TBR5 109 aa13.44□□□□□ -0.26
VPS29-206ENST00000549578 XAGE1AQ9HD64 81 aa13.44□□□□□ -0.26
VPS29-206ENST00000549578 A0A087WYN8 130 aa13.44□□□□□ -0.26
VPS29-206ENST00000549578 ZNF815PA8K554 130 aa13.44□□□□□ -0.26
VPS29-206ENST00000549578 SMIM13P0DJ93 91 aa13.44□□□□□ -0.26
VPS29-206ENST00000549578 LINC00158P58513 81 aa13.44□□□□□ -0.26
VPS29-206ENST00000549578 COX17Q14061 63 aa13.44□□□□□ -0.26
VPS29-206ENST00000549578 C9orf129Q5T035 196 aaKnown RBP13.43□□□□□ -0.26
VPS29-206ENST00000549578 PCP2Q8IVA1 136 aa13.43□□□□□ -0.26
VPS29-206ENST00000549578 RYR1P21817 5038 aa13.41□□□□□ -0.26
VPS29-206ENST00000549578 A0A0J9YXY3 114 aa13.41□□□□□ -0.26
VPS29-206ENST00000549578 FAM168BA1KXE4 195 aa13.4□□□□□ -0.26
VPS29-206ENST00000549578 A0A1W2PNN7 141 aa13.39□□□□□ -0.27
VPS29-206ENST00000549578 SND1-IT1Q9HBX3 110 aa13.39□□□□□ -0.27
VPS29-206ENST00000549578 PLAC8Q9NZF1 115 aa13.39□□□□□ -0.27
VPS29-206ENST00000549578 HSPG2P98160 4391 aa13.39□□□□□ -0.27
VPS29-206ENST00000549578 LINC00587B1AMM8 73 aa13.39□□□□□ -0.27
VPS29-206ENST00000549578 PAM16Q9Y3D7 125 aa13.39□□□□□ -0.27
VPS29-206ENST00000549578 MIR7-3HGQ8N6C7 128 aa13.38□□□□□ -0.27
VPS29-206ENST00000549578 VAMP8Q9BV40 100 aa13.38□□□□□ -0.27
VPS29-206ENST00000549578 DAND5Q8N907 189 aa13.37□□□□□ -0.27
VPS29-206ENST00000549578 FAM19A5Q7Z5A7 132 aaPredicted RBP13.36□□□□□ -0.27
VPS29-206ENST00000549578 SPATA45Q537H7 98 aa13.35□□□□□ -0.27
VPS29-206ENST00000549578 KRTAP7-1Q8IUC3 87 aa13.35□□□□□ -0.27
VPS29-206ENST00000549578 SERTAD4-AS1Q5TG53 156 aa13.34□□□□□ -0.27
VPS29-206ENST00000549578 SCGB1D4Q6XE38 83 aa13.34□□□□□ -0.27
VPS29-206ENST00000549578 SMR3BP02814 79 aaPredicted RBP13.34□□□□□ -0.27
VPS29-206ENST00000549578 ADAMTSL4-AS1Q5T5F5 129 aa13.34□□□□□ -0.27
VPS29-206ENST00000549578 TP73-AS1Q9UF72 201 aa13.34□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 41.3 ms