RNA–Protein interactions for RNA: ENST00000548945.6

PTCH1-218, Transcript of patched 1, humanhuman

TSL 1 (best)

Gene PTCH1, Length 243 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-218ENST00000548945 CAMK2N2Q96S95 79 aa7.9□□□□□ -1.14
PTCH1-218ENST00000548945 TIMM21Q9BVV7 248 aa7.89□□□□□ -1.15
PTCH1-218ENST00000548945 PSORS1C2Q9UIG4 136 aa7.89□□□□□ -1.15
PTCH1-218ENST00000548945 UBE2D4Q9Y2X8 147 aa7.89□□□□□ -1.15
PTCH1-218ENST00000548945 F8WDY8 70 aa7.88□□□□□ -1.15
PTCH1-218ENST00000548945 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP7.88□□□□□ -1.15
PTCH1-218ENST00000548945 C9orf116Q5BN46 136 aaPredicted RBP7.88□□□□□ -1.15
PTCH1-218ENST00000548945 C2orf66Q6UXQ4 117 aa7.88□□□□□ -1.15
PTCH1-218ENST00000548945 TOMM6Q96B49 74 aa7.88□□□□□ -1.15
PTCH1-218ENST00000548945 CYSLTR1Q9Y271 337 aa7.88□□□□□ -1.15
PTCH1-218ENST00000548945 TRAV13-1A0A0B4J241 112 aa7.87□□□□□ -1.15
PTCH1-218ENST00000548945 ATP5LO75964 103 aa7.87□□□□□ -1.15
PTCH1-218ENST00000548945 MAP1LC3CQ9BXW4 147 aa7.87□□□□□ -1.15
PTCH1-218ENST00000548945 KRTDAPP60985 99 aa7.86□□□□□ -1.15
PTCH1-218ENST00000548945 RPL18AQ02543 176 aaKnown RBP7.86□□□□□ -1.15
PTCH1-218ENST00000548945 IFI27L1Q96BM0 104 aa7.86□□□□□ -1.15
PTCH1-218ENST00000548945 C3orf79P0CE67 100 aa7.85□□□□□ -1.15
PTCH1-218ENST00000548945 SPAG11BQ08648 103 aa7.85□□□□□ -1.15
PTCH1-218ENST00000548945 RNASE13Q5GAN3 156 aaKnown RBP7.85□□□□□ -1.15
PTCH1-218ENST00000548945 C1orf137Q5JT78 98 aa7.85□□□□□ -1.15
PTCH1-218ENST00000548945 Q6ZUT4 128 aa7.85□□□□□ -1.15
PTCH1-218ENST00000548945 LINC00173Q6ZV60 143 aa7.85□□□□□ -1.15
PTCH1-218ENST00000548945 C5orf38Q86SI9 138 aa7.85□□□□□ -1.15
PTCH1-218ENST00000548945 SCGB3A1Q96QR1 104 aa7.85□□□□□ -1.15
PTCH1-218ENST00000548945 MRPL35Q9NZE8 188 aaKnown RBP7.85□□□□□ -1.15
PTCH1-218ENST00000548945 SMIM6P0DI80 62 aa7.84□□□□□ -1.15
PTCH1-218ENST00000548945 JOSD1Q15040 202 aaPredicted RBP7.84□□□□□ -1.15
PTCH1-218ENST00000548945 PET117Q6UWS5 81 aa7.84□□□□□ -1.15
PTCH1-218ENST00000548945 ERASQ7Z444 233 aa7.84□□□□□ -1.15
PTCH1-218ENST00000548945 DIRC1Q969H9 104 aa7.84□□□□□ -1.15
PTCH1-218ENST00000548945 TIMM17AQ99595 171 aa7.84□□□□□ -1.15
PTCH1-218ENST00000548945 C20orf202A1L168 122 aa7.83□□□□□ -1.16
PTCH1-218ENST00000548945 SYS1-DBNDD2H3BUS1 97 aa7.83□□□□□ -1.16
PTCH1-218ENST00000548945 RPL39P62891 51 aaKnown RBP7.83□□□□□ -1.16
PTCH1-218ENST00000548945 PYY3Q5JQD4 70 aa7.83□□□□□ -1.16
PTCH1-218ENST00000548945 Q6ZN92 141 aa7.83□□□□□ -1.16
PTCH1-218ENST00000548945 PHF5AQ7RTV0 110 aaKnown RBP7.83□□□□□ -1.16
PTCH1-218ENST00000548945 TMEM141Q96I45 108 aa7.83□□□□□ -1.16
PTCH1-218ENST00000548945 OPRPNQ99935 248 aaPredicted RBP7.83□□□□□ -1.16
PTCH1-218ENST00000548945 LPAP08519 4548 aa7.82□□□□□ -1.16
PTCH1-218ENST00000548945 IGHV3OR16-9A0A0B4J2B5 98 aa7.82□□□□□ -1.16
PTCH1-218ENST00000548945 IGIPA6NJ69 53 aa7.82□□□□□ -1.16
PTCH1-218ENST00000548945 SCGB1D1O95968 90 aa7.82□□□□□ -1.16
PTCH1-218ENST00000548945 IGLV7-43P04211 117 aa7.82□□□□□ -1.16
PTCH1-218ENST00000548945 NPSP0C0P6 89 aa7.82□□□□□ -1.16
PTCH1-218ENST00000548945 TLX1NBP0CAT3 122 aa7.82□□□□□ -1.16
PTCH1-218ENST00000548945 SPANXA1Q9NS26 97 aa7.82□□□□□ -1.16
PTCH1-218ENST00000548945 PYGO1Q9Y3Y4 419 aa7.82□□□□□ -1.16
PTCH1-218ENST00000548945 NDUFA1O15239 70 aa7.81□□□□□ -1.16
PTCH1-218ENST00000548945 MRPS36P82909 103 aaKnown RBP7.81□□□□□ -1.16
PTCH1-218ENST00000548945 PAPPA-AS1Q5QFB9 102 aa7.81□□□□□ -1.16
PTCH1-218ENST00000548945 ORAOV1Q8WV07 137 aa7.81□□□□□ -1.16
PTCH1-218ENST00000548945 H0Y8G0 127 aa7.8□□□□□ -1.16
PTCH1-218ENST00000548945 H0Y9J4 135 aa7.8□□□□□ -1.16
PTCH1-218ENST00000548945 LINC01545Q5VT33 79 aa7.8□□□□□ -1.16
PTCH1-218ENST00000548945 FAM104AQ969W3 186 aa7.8□□□□□ -1.16
PTCH1-218ENST00000548945 IGLV1-50A0A075B6I6 118 aa7.79□□□□□ -1.16
PTCH1-218ENST00000548945 A0A087WZ39 114 aa7.79□□□□□ -1.16
PTCH1-218ENST00000548945 TRAV12-1A0A0B4J245 112 aa7.79□□□□□ -1.16
PTCH1-218ENST00000548945 PRR26Q8N8Z3 221 aa7.79□□□□□ -1.16
PTCH1-218ENST00000548945 IGLV4-3A0A075B6K6 122 aa7.78□□□□□ -1.16
PTCH1-218ENST00000548945 PMVKQ15126 192 aa7.78□□□□□ -1.16
PTCH1-218ENST00000548945 LINC00518Q8N0U6 118 aa7.78□□□□□ -1.16
PTCH1-218ENST00000548945 FAM168BA1KXE4 195 aa7.77□□□□□ -1.17
PTCH1-218ENST00000548945 C10orf25Q5T742 122 aa7.77□□□□□ -1.17
PTCH1-218ENST00000548945 UNQ6190/PRO20217Q6UXQ8 127 aa7.77□□□□□ -1.17
PTCH1-218ENST00000548945 C12orf57Q99622 126 aa7.77□□□□□ -1.17
PTCH1-218ENST00000548945 VCX2Q9H322 139 aa7.77□□□□□ -1.17
PTCH1-218ENST00000548945 C6orf48Q9UBA6 75 aa7.77□□□□□ -1.17
PTCH1-218ENST00000548945 F8VRH5 84 aa7.76□□□□□ -1.17
PTCH1-218ENST00000548945 TEX43Q6ZNM6 134 aa7.76□□□□□ -1.17
PTCH1-218ENST00000548945 KRTAP11-1Q8IUC1 163 aa7.76□□□□□ -1.17
PTCH1-218ENST00000548945 TRBV30A0A0K0K1B3 111 aa7.75□□□□□ -1.17
PTCH1-218ENST00000548945 KRTAP1-4P0C5Y4 121 aa7.75□□□□□ -1.17
PTCH1-218ENST00000548945 PLNP26678 52 aa7.75□□□□□ -1.17
PTCH1-218ENST00000548945 S100A12P80511 92 aa7.75□□□□□ -1.17
PTCH1-218ENST00000548945 KIAA0087Q14695 138 aa7.75□□□□□ -1.17
PTCH1-218ENST00000548945 FAM19A5Q7Z5A7 132 aaPredicted RBP7.75□□□□□ -1.17
PTCH1-218ENST00000548945 AMELXQ99217 191 aa7.75□□□□□ -1.17
PTCH1-218ENST00000548945 PMCHL2Q9BQD1 86 aa7.75□□□□□ -1.17
PTCH1-218ENST00000548945 C2orf88Q9BSF0 95 aa7.75□□□□□ -1.17
PTCH1-218ENST00000548945 CST9LQ9H4G1 147 aa7.75□□□□□ -1.17
PTCH1-218ENST00000548945 CHTOPQ9Y3Y2 248 aaKnown RBP7.75□□□□□ -1.17
PTCH1-218ENST00000548945 DPM2O94777 84 aa7.74□□□□□ -1.17
PTCH1-218ENST00000548945 RPL13AP40429 203 aaKnown RBP7.74□□□□□ -1.17
PTCH1-218ENST00000548945 GAGE2EQ4V326 116 aa7.74□□□□□ -1.17
PTCH1-218ENST00000548945 GAGE2DQ9UEU5 116 aa7.74□□□□□ -1.17
PTCH1-218ENST00000548945 MUC2Q02817 5179 aa7.73□□□□□ -1.17
PTCH1-218ENST00000548945 NDUFC2-KCTD14E9PQ53 114 aa7.73□□□□□ -1.17
PTCH1-218ENST00000548945 M0QXV9 152 aa7.73□□□□□ -1.17
PTCH1-218ENST00000548945 IGKCP01834 107 aa7.73□□□□□ -1.17
PTCH1-218ENST00000548945 UBE2BP63146 152 aa7.73□□□□□ -1.17
PTCH1-218ENST00000548945 KRTAP7-1Q8IUC3 87 aa7.73□□□□□ -1.17
PTCH1-218ENST00000548945 ATOH7Q8N100 152 aa7.73□□□□□ -1.17
PTCH1-218ENST00000548945 LINC01561Q8N1V8 128 aa7.73□□□□□ -1.17
PTCH1-218ENST00000548945 VAMP8Q9BV40 100 aa7.73□□□□□ -1.17
PTCH1-218ENST00000548945 HSBP1L1C9JCN9 74 aa7.72□□□□□ -1.17
PTCH1-218ENST00000548945 LINC00242Q5T6M2 205 aa7.72□□□□□ -1.17
PTCH1-218ENST00000548945 ZC2HC1BQ5TFG8 222 aa7.72□□□□□ -1.17
PTCH1-218ENST00000548945 UBE2D1P51668 147 aa7.71□□□□□ -1.18
Retrieved 100 of 20,778 RNA–protein pairs in 36.4 ms