RNA–Protein interactions for RNA: ENST00000548399.1

PRPF40B-207, Transcript of pre-mRNA processing factor 40 homolog B, humanhuman

TSL 3

Gene PRPF40B, Length 455 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40B-207ENST00000548399 PANO1I0J062 215 aa8.84□□□□□ -0.99
PRPF40B-207ENST00000548399 DPM2O94777 84 aa8.84□□□□□ -0.99
PRPF40B-207ENST00000548399 SCGB1D1O95968 90 aa8.84□□□□□ -0.99
PRPF40B-207ENST00000548399 PLNP26678 52 aa8.84□□□□□ -0.99
PRPF40B-207ENST00000548399 HERVK_113P63121 156 aa8.84□□□□□ -0.99
PRPF40B-207ENST00000548399 CIRBPQ14011 172 aaKnown RBP8.84□□□□□ -0.99
PRPF40B-207ENST00000548399 ORAOV1Q8WV07 137 aa8.84□□□□□ -0.99
PRPF40B-207ENST00000548399 DPH3Q96FX2 82 aa8.84□□□□□ -0.99
PRPF40B-207ENST00000548399 C2orf48Q96LS8 159 aa8.84□□□□□ -0.99
PRPF40B-207ENST00000548399 CAMK2N2Q96S95 79 aa8.84□□□□□ -0.99
PRPF40B-207ENST00000548399 PMCHL2Q9BQD1 86 aa8.84□□□□□ -0.99
PRPF40B-207ENST00000548399 GEMIN7Q9H840 131 aaKnown RBP8.84□□□□□ -0.99
PRPF40B-207ENST00000548399 A0A087WZ39 114 aa8.83□□□□□ -1
PRPF40B-207ENST00000548399 IGKCP01834 107 aa8.83□□□□□ -1
PRPF40B-207ENST00000548399 CHTF8P0CG12 524 aa8.83□□□□□ -1
PRPF40B-207ENST00000548399 JOSD1Q15040 202 aaPredicted RBP8.83□□□□□ -1
PRPF40B-207ENST00000548399 ABCA13Q86UQ4 5058 aa8.83□□□□□ -1
PRPF40B-207ENST00000548399 DNAH8Q96JB1 4490 aa8.82□□□□□ -1
PRPF40B-207ENST00000548399 C11orf86A6NJI1 115 aa8.82□□□□□ -1
PRPF40B-207ENST00000548399 PLA2G1BP04054 148 aaKnown RBP8.82□□□□□ -1
PRPF40B-207ENST00000548399 SPACA4Q8TDM5 124 aa8.82□□□□□ -1
PRPF40B-207ENST00000548399 IGLV5-45A0A087WSX0 123 aa8.81□□□□□ -1
PRPF40B-207ENST00000548399 IGKV2-24A0A0C4DH68 120 aa8.81□□□□□ -1
PRPF40B-207ENST00000548399 Q6ZRU5 148 aa8.81□□□□□ -1
PRPF40B-207ENST00000548399 LINC00469Q8N7U9 141 aa8.81□□□□□ -1
PRPF40B-207ENST00000548399 F8WDY8 70 aa8.8□□□□□ -1
PRPF40B-207ENST00000548399 H3BRM9 83 aa8.8□□□□□ -1
PRPF40B-207ENST00000548399 ZNF22P17026 224 aaPredicted RBP8.8□□□□□ -1
PRPF40B-207ENST00000548399 TMEM170BQ5T4T1 132 aa8.8□□□□□ -1
PRPF40B-207ENST00000548399 LINC01561Q8N1V8 128 aa8.8□□□□□ -1
PRPF40B-207ENST00000548399 LINC00474Q9P2X8 69 aa8.8□□□□□ -1
PRPF40B-207ENST00000548399 CDKN2A-AS1Q9UH64 79 aa8.8□□□□□ -1
PRPF40B-207ENST00000548399 A0A087WYN8 130 aa8.79□□□□□ -1
PRPF40B-207ENST00000548399 A0A096LNI7 61 aa8.79□□□□□ -1
PRPF40B-207ENST00000548399 NDUFA1O15239 70 aa8.79□□□□□ -1
PRPF40B-207ENST00000548399 INAFM2P0DMQ5 153 aa8.79□□□□□ -1
PRPF40B-207ENST00000548399 MAJINQ3KP22 176 aa8.79□□□□□ -1
PRPF40B-207ENST00000548399 PYY3Q5JQD4 70 aa8.79□□□□□ -1
PRPF40B-207ENST00000548399 LOC107984640A0A0U1RRK4 108 aa8.78□□□□□ -1
PRPF40B-207ENST00000548399 RNF151Q2KHN1 245 aa8.78□□□□□ -1
PRPF40B-207ENST00000548399 ATOH7Q8N100 152 aa8.78□□□□□ -1
PRPF40B-207ENST00000548399 PLAC8Q9NZF1 115 aa8.77□□□□□ -1.01
PRPF40B-207ENST00000548399 SRRM2Q9UQ35 2752 aaKnown RBP8.77□□□□□ -1.01
PRPF40B-207ENST00000548399 FAT1Q14517 4588 aa8.76□□□□□ -1.01
PRPF40B-207ENST00000548399 TMEM223A0PJW6 202 aa8.76□□□□□ -1.01
PRPF40B-207ENST00000548399 PRSS2P07478 247 aa8.76□□□□□ -1.01
PRPF40B-207ENST00000548399 HERVK_113P61574 105 aa8.76□□□□□ -1.01
PRPF40B-207ENST00000548399 GAGE2BQ13066 116 aa8.76□□□□□ -1.01
PRPF40B-207ENST00000548399 KIAA0087Q14695 138 aa8.76□□□□□ -1.01
PRPF40B-207ENST00000548399 STPG4Q8N801 248 aa8.76□□□□□ -1.01
PRPF40B-207ENST00000548399 HSBP1L1C9JCN9 74 aa8.75□□□□□ -1.01
PRPF40B-207ENST00000548399 SPINK8P0C7L1 97 aa8.75□□□□□ -1.01
PRPF40B-207ENST00000548399 PTTG1IPP53801 180 aa8.75□□□□□ -1.01
PRPF40B-207ENST00000548399 RPL18AQ02543 176 aaKnown RBP8.75□□□□□ -1.01
PRPF40B-207ENST00000548399 C10orf25Q5T742 122 aa8.75□□□□□ -1.01
PRPF40B-207ENST00000548399 UNQ6190/PRO20217Q6UXQ8 127 aa8.75□□□□□ -1.01
PRPF40B-207ENST00000548399 TOMM7Q9P0U1 55 aa8.75□□□□□ -1.01
PRPF40B-207ENST00000548399 SMIM1B2RUZ4 78 aa8.74□□□□□ -1.01
PRPF40B-207ENST00000548399 SMIM6P0DI80 62 aa8.74□□□□□ -1.01
PRPF40B-207ENST00000548399 RPL37AP61513 92 aaKnown RBP8.74□□□□□ -1.01
PRPF40B-207ENST00000548399 IGLV5-39A0A0G2JS06 123 aa8.73□□□□□ -1.01
PRPF40B-207ENST00000548399 CKS1BP61024 79 aa8.73□□□□□ -1.01
PRPF40B-207ENST00000548399 C6orf226Q5I0X4 101 aa8.73□□□□□ -1.01
PRPF40B-207ENST00000548399 C2orf82Q6UX34 121 aa8.73□□□□□ -1.01
PRPF40B-207ENST00000548399 Q8IZM0 81 aa8.73□□□□□ -1.01
PRPF40B-207ENST00000548399 C6orf48Q9UBA6 75 aa8.73□□□□□ -1.01
PRPF40B-207ENST00000548399 TRBV30A0A0K0K1B3 111 aa8.72□□□□□ -1.01
PRPF40B-207ENST00000548399 E9PLD3 99 aa8.72□□□□□ -1.01
PRPF40B-207ENST00000548399 C7orf33Q8WU49 177 aa8.72□□□□□ -1.01
PRPF40B-207ENST00000548399 VAMP8Q9BV40 100 aa8.72□□□□□ -1.01
PRPF40B-207ENST00000548399 LEPROTO15243 131 aa8.71□□□□□ -1.02
PRPF40B-207ENST00000548399 KRTAP10-4P60372 401 aaPredicted RBP8.71□□□□□ -1.02
PRPF40B-207ENST00000548399 PLEKHB2Q96CS7 222 aa8.71□□□□□ -1.02
PRPF40B-207ENST00000548399 TLX1NBP0CAT3 122 aa8.7□□□□□ -1.02
PRPF40B-207ENST00000548399 S100A12P80511 92 aa8.7□□□□□ -1.02
PRPF40B-207ENST00000548399 ANKRD39Q53RE8 183 aa8.7□□□□□ -1.02
PRPF40B-207ENST00000548399 COX7B2Q8TF08 81 aa8.7□□□□□ -1.02
PRPF40B-207ENST00000548399 VPS13BQ7Z7G8 4022 aa8.7□□□□□ -1.02
PRPF40B-207ENST00000548399 CXCL5P42830 114 aa8.69□□□□□ -1.02
PRPF40B-207ENST00000548399 Q6ZRP5 223 aa8.69□□□□□ -1.02
PRPF40B-207ENST00000548399 PAM16Q9Y3D7 125 aa8.69□□□□□ -1.02
PRPF40B-207ENST00000548399 NDUFC2-KCTD14E9PQ53 114 aa8.68□□□□□ -1.02
PRPF40B-207ENST00000548399 J3QQQ9 107 aa8.68□□□□□ -1.02
PRPF40B-207ENST00000548399 SPATA45Q537H7 98 aa8.68□□□□□ -1.02
PRPF40B-207ENST00000548399 IGKV2D-26A0A0A0MRZ7 120 aa8.67□□□□□ -1.02
PRPF40B-207ENST00000548399 LGALS3P17931 250 aaKnown RBP8.67□□□□□ -1.02
PRPF40B-207ENST00000548399 NMUP48645 174 aa8.67□□□□□ -1.02
PRPF40B-207ENST00000548399 GAGE2EQ4V326 116 aa8.67□□□□□ -1.02
PRPF40B-207ENST00000548399 C9orf116Q5BN46 136 aaPredicted RBP8.67□□□□□ -1.02
PRPF40B-207ENST00000548399 GAGE2DQ9UEU5 116 aa8.67□□□□□ -1.02
PRPF40B-207ENST00000548399 A0A1W2PNN7 141 aa8.66□□□□□ -1.02
PRPF40B-207ENST00000548399 TSPEAR-AS2P59090 65 aa8.66□□□□□ -1.02
PRPF40B-207ENST00000548399 C12orf57Q99622 126 aa8.66□□□□□ -1.02
PRPF40B-207ENST00000548399 SFTA2Q6UW10 78 aa8.65□□□□□ -1.02
PRPF40B-207ENST00000548399 LINC00518Q8N0U6 118 aa8.64□□□□□ -1.03
PRPF40B-207ENST00000548399 NDUFA12Q9UI09 145 aa8.64□□□□□ -1.03
PRPF40B-207ENST00000548399 MYMXA0A1B0GTQ4 84 aa8.63□□□□□ -1.03
PRPF40B-207ENST00000548399 PRR3P79522 188 aaKnown RBP8.63□□□□□ -1.03
PRPF40B-207ENST00000548399 PCP2Q8IVA1 136 aa8.63□□□□□ -1.03
PRPF40B-207ENST00000548399 FAM168BA1KXE4 195 aa8.62□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 40 ms