RNA–Protein interactions for RNA: ENST00000544504.5

YBX3-215, Transcript of Y-box binding protein 3, human

TSL 3

Gene YBX3, Length 583 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
YBX3-215	ENST00000544504	MYCBP2	O75592	4640 aa		6.32	□□□□□ -1.4
YBX3-215	ENST00000544504	ANKRD39	Q53RE8	183 aa		6.32	□□□□□ -1.4
YBX3-215	ENST00000544504	C6orf226	Q5I0X4	101 aa		6.32	□□□□□ -1.4
YBX3-215	ENST00000544504	C1orf134	Q5TEV5	83 aa		6.32	□□□□□ -1.4
YBX3-215	ENST00000544504		Q8N1X5	172 aa		6.32	□□□□□ -1.4
YBX3-215	ENST00000544504	DMBT1	Q9UGM3	2413 aa	Predicted RBP	6.31	□□□□□ -1.4
YBX3-215	ENST00000544504	MYMX	A0A1B0GTQ4	84 aa		6.31	□□□□□ -1.4
YBX3-215	ENST00000544504	TSTD3	H0UI37	97 aa		6.31	□□□□□ -1.4
YBX3-215	ENST00000544504	ZNF561-AS1	K7EIQ3	104 aa		6.31	□□□□□ -1.4
YBX3-215	ENST00000544504		M0R2N4	97 aa		6.31	□□□□□ -1.4
YBX3-215	ENST00000544504	COX8A	P10176	69 aa		6.31	□□□□□ -1.4
YBX3-215	ENST00000544504	HERV-K104	P63124	156 aa		6.31	□□□□□ -1.4
YBX3-215	ENST00000544504	MAJIN	Q3KP22	176 aa		6.31	□□□□□ -1.4
YBX3-215	ENST00000544504	TOMM7	Q9P0U1	55 aa		6.31	□□□□□ -1.4
YBX3-215	ENST00000544504	LINC00587	B1AMM8	73 aa		6.3	□□□□□ -1.4
YBX3-215	ENST00000544504	DLEU1	O43261	78 aa		6.3	□□□□□ -1.4
YBX3-215	ENST00000544504	CKS1B	P61024	79 aa		6.3	□□□□□ -1.4
YBX3-215	ENST00000544504	SPAG11B	Q08648	103 aa		6.3	□□□□□ -1.4
YBX3-215	ENST00000544504	CDPF1	Q6NVV7	123 aa		6.3	□□□□□ -1.4
YBX3-215	ENST00000544504	SLC25A34	Q6PIV7	304 aa		6.3	□□□□□ -1.4
YBX3-215	ENST00000544504	C2orf48	Q96LS8	159 aa		6.3	□□□□□ -1.4
YBX3-215	ENST00000544504	NDUFA12	Q9UI09	145 aa		6.3	□□□□□ -1.4
YBX3-215	ENST00000544504	GVQW2	A0A096LPI5	108 aa	Predicted RBP	6.29	□□□□□ -1.4
YBX3-215	ENST00000544504	IGKV2D-26	A0A0A0MRZ7	120 aa		6.29	□□□□□ -1.4
YBX3-215	ENST00000544504	ZNF815P	A8K554	130 aa		6.29	□□□□□ -1.4
YBX3-215	ENST00000544504	C16orf90	A8MZG2	172 aa		6.29	□□□□□ -1.4
YBX3-215	ENST00000544504	USP17L23	D6RBM5	183 aa		6.29	□□□□□ -1.4
YBX3-215	ENST00000544504	NDUFA1	O15239	70 aa		6.29	□□□□□ -1.4
YBX3-215	ENST00000544504	FAT1	Q14517	4588 aa		6.29	□□□□□ -1.4
YBX3-215	ENST00000544504	UQCR10	Q9UDW1	63 aa		6.29	□□□□□ -1.4
YBX3-215	ENST00000544504	EREG	O14944	169 aa		6.28	□□□□□ -1.4
YBX3-215	ENST00000544504	GCSH	P23434	173 aa		6.28	□□□□□ -1.4
YBX3-215	ENST00000544504	CIRBP	Q14011	172 aa	Known RBP	6.28	□□□□□ -1.4
YBX3-215	ENST00000544504		Q6ZRN7	208 aa	Predicted RBP	6.28	□□□□□ -1.4
YBX3-215	ENST00000544504	BOD1L2	Q8IYS8	172 aa		6.28	□□□□□ -1.4
YBX3-215	ENST00000544504	C15orf56	Q8N910	161 aa		6.28	□□□□□ -1.4
YBX3-215	ENST00000544504	TSPEAR-AS2	P59090	65 aa		6.27	□□□□□ -1.41
YBX3-215	ENST00000544504	KIAA0087	Q14695	138 aa		6.27	□□□□□ -1.41
YBX3-215	ENST00000544504	SCGB1D4	Q6XE38	83 aa		6.27	□□□□□ -1.41
YBX3-215	ENST00000544504	NTN5	Q8WTR8	489 aa	Predicted RBP	6.27	□□□□□ -1.41
YBX3-215	ENST00000544504	C14orf144	Q96I85	54 aa		6.27	□□□□□ -1.41
YBX3-215	ENST00000544504	PKIG	Q9Y2B9	76 aa		6.27	□□□□□ -1.41
YBX3-215	ENST00000544504	TRAV16	A0A0A6YYK6	109 aa	Predicted RBP	6.26	□□□□□ -1.41
YBX3-215	ENST00000544504	TRBV30	A0A0K0K1B3	111 aa		6.26	□□□□□ -1.41
YBX3-215	ENST00000544504	TIMM17B	O60830	172 aa		6.26	□□□□□ -1.41
YBX3-215	ENST00000544504	HIGD2B	Q4VC39	106 aa		6.26	□□□□□ -1.41
YBX3-215	ENST00000544504	PCP2	Q8IVA1	136 aa		6.26	□□□□□ -1.41
YBX3-215	ENST00000544504	ZNF625	Q96I27	306 aa	Predicted RBP	6.26	□□□□□ -1.41
YBX3-215	ENST00000544504	CAMK2N2	Q96S95	79 aa		6.26	□□□□□ -1.41
YBX3-215	ENST00000544504	MIEN1	Q9BRT3	115 aa		6.26	□□□□□ -1.41
YBX3-215	ENST00000544504	HMCN2	Q8NDA2	5059 aa		6.26	□□□□□ -1.41
YBX3-215	ENST00000544504	TMEM238	C9JI98	176 aa		6.25	□□□□□ -1.41
YBX3-215	ENST00000544504	SYCN	Q0VAF6	134 aa		6.25	□□□□□ -1.41
YBX3-215	ENST00000544504	COX17	Q14061	63 aa		6.25	□□□□□ -1.41
YBX3-215	ENST00000544504	COPS9	Q8WXC6	57 aa		6.25	□□□□□ -1.41
YBX3-215	ENST00000544504	PRO1933	Q9H354	126 aa		6.25	□□□□□ -1.41
YBX3-215	ENST00000544504	HIGD1B	Q9P298	99 aa		6.25	□□□□□ -1.41
YBX3-215	ENST00000544504		A0A0J9YXY3	114 aa		6.24	□□□□□ -1.41
YBX3-215	ENST00000544504	LRCOL1	A6NCL2	159 aa		6.24	□□□□□ -1.41
YBX3-215	ENST00000544504	RNF151	Q2KHN1	245 aa		6.24	□□□□□ -1.41
YBX3-215	ENST00000544504	MEIG1	Q5JSS6	88 aa		6.24	□□□□□ -1.41
YBX3-215	ENST00000544504		Q6ZVH6	145 aa		6.24	□□□□□ -1.41
YBX3-215	ENST00000544504	CARD19	Q96LW7	228 aa		6.24	□□□□□ -1.41
YBX3-215	ENST00000544504	SRRM2	Q9UQ35	2752 aa	Known RBP	6.23	□□□□□ -1.41
YBX3-215	ENST00000544504		A0A087WTM6	91 aa		6.23	□□□□□ -1.41
YBX3-215	ENST00000544504	LECT2	O14960	151 aa		6.23	□□□□□ -1.41
YBX3-215	ENST00000544504	HNRNPA3	P51991	378 aa	Known RBP	6.23	□□□□□ -1.41
YBX3-215	ENST00000544504	CNBP	P62633	177 aa	Known RBP	6.23	□□□□□ -1.41
YBX3-215	ENST00000544504	C2orf82	Q6UX34	121 aa		6.23	□□□□□ -1.41
YBX3-215	ENST00000544504	TAL2	Q16559	108 aa		6.22	□□□□□ -1.41
YBX3-215	ENST00000544504	UNQ6190/PRO20217	Q6UXQ8	127 aa		6.22	□□□□□ -1.41
YBX3-215	ENST00000544504	TTTY13	Q9BZ97	58 aa		6.22	□□□□□ -1.41
YBX3-215	ENST00000544504	SPANXB1	Q9NS25	103 aa	Predicted RBP	6.22	□□□□□ -1.41
YBX3-215	ENST00000544504	ERG28	Q9UKR5	140 aa		6.22	□□□□□ -1.41
YBX3-215	ENST00000544504	IFITM1	P13164	125 aa		6.21	□□□□□ -1.42
YBX3-215	ENST00000544504	LINC00158	P58513	81 aa		6.21	□□□□□ -1.42
YBX3-215	ENST00000544504	SRSF9	Q13242	221 aa	Known RBP eCLIP	6.21	□□□□□ -1.42
YBX3-215	ENST00000544504		Q6ZRU5	148 aa		6.21	□□□□□ -1.42
YBX3-215	ENST00000544504		Q8N814	137 aa		6.21	□□□□□ -1.42
YBX3-215	ENST00000544504	LINC00526	Q96FQ7	95 aa		6.21	□□□□□ -1.42
YBX3-215	ENST00000544504	EPM2A	B3EWF7	344 aa		6.2	□□□□□ -1.42
YBX3-215	ENST00000544504	INAFM2	P0DMQ5	153 aa		6.2	□□□□□ -1.42
YBX3-215	ENST00000544504	DDT	P30046	118 aa		6.2	□□□□□ -1.42
YBX3-215	ENST00000544504	TNP2	Q05952	138 aa		6.2	□□□□□ -1.42
YBX3-215	ENST00000544504	WFDC2	Q14508	124 aa		6.2	□□□□□ -1.42
YBX3-215	ENST00000544504	C10orf25	Q5T742	122 aa		6.2	□□□□□ -1.42
YBX3-215	ENST00000544504	HIST1H4G	Q99525	98 aa		6.2	□□□□□ -1.42
YBX3-215	ENST00000544504	SPANXD	Q9BXN6	97 aa		6.2	□□□□□ -1.42
YBX3-215	ENST00000544504	PPDPF	Q9H3Y8	114 aa		6.2	□□□□□ -1.42
YBX3-215	ENST00000544504	SPANXC	Q9NY87	97 aa		6.2	□□□□□ -1.42
YBX3-215	ENST00000544504	C6orf48	Q9UBA6	75 aa		6.2	□□□□□ -1.42
YBX3-215	ENST00000544504	LOC107984640	A0A0U1RRK4	108 aa		6.19	□□□□□ -1.42
YBX3-215	ENST00000544504	NDUFC2-KCTD14	E9PQ53	114 aa		6.19	□□□□□ -1.42
YBX3-215	ENST00000544504	TLX1NB	P0CAT3	122 aa		6.19	□□□□□ -1.42
YBX3-215	ENST00000544504	SMIM13	P0DJ93	91 aa		6.19	□□□□□ -1.42
YBX3-215	ENST00000544504	PFN2	P35080	140 aa		6.19	□□□□□ -1.42
YBX3-215	ENST00000544504	HSD52	Q0P140	79 aa		6.19	□□□□□ -1.42
YBX3-215	ENST00000544504	C2orf91	Q6ZV80	131 aa		6.19	□□□□□ -1.42
YBX3-215	ENST00000544504	TP73-AS1	Q9UF72	201 aa		6.19	□□□□□ -1.42
YBX3-215	ENST00000544504	VPS13B	Q7Z7G8	4022 aa		6.18	□□□□□ -1.42

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