RNA–Protein interactions for RNA: ENST00000539417.6

RPAIN-206, Transcript of RPA interacting protein, humanhuman

TSL 2

Gene RPAIN, Length 1,471 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RPAIN-206ENST00000539417 HSBP1O75506 76 aa10.01□□□□□ -0.81
RPAIN-206ENST00000539417 SCGB1D1O95968 90 aa10.01□□□□□ -0.81
RPAIN-206ENST00000539417 UNQ6190/PRO20217Q6UXQ8 127 aa10.01□□□□□ -0.81
RPAIN-206ENST00000539417 SPACA4Q8TDM5 124 aa10.01□□□□□ -0.81
RPAIN-206ENST00000539417 HERVK_113P63121 156 aa10□□□□□ -0.81
RPAIN-206ENST00000539417 C2orf82Q6UX34 121 aa10□□□□□ -0.81
RPAIN-206ENST00000539417 GEMIN7Q9H840 131 aaKnown RBP10□□□□□ -0.81
RPAIN-206ENST00000539417 SRRM2Q9UQ35 2752 aaKnown RBP10□□□□□ -0.81
RPAIN-206ENST00000539417 TINCRA0A1B0GVN0 87 aa9.99□□□□□ -0.81
RPAIN-206ENST00000539417 EPM2AB3EWF7 344 aa9.99□□□□□ -0.81
RPAIN-206ENST00000539417 LINC00528Q8N1L1 170 aa9.99□□□□□ -0.81
RPAIN-206ENST00000539417 LINC01561Q8N1V8 128 aa9.99□□□□□ -0.81
RPAIN-206ENST00000539417 IGLV5-45A0A087WSX0 123 aa9.98□□□□□ -0.81
RPAIN-206ENST00000539417 A0A087WYN8 130 aa9.98□□□□□ -0.81
RPAIN-206ENST00000539417 TSTD3H0UI37 97 aa9.98□□□□□ -0.81
RPAIN-206ENST00000539417 LINC00469Q8N7U9 141 aa9.98□□□□□ -0.81
RPAIN-206ENST00000539417 C6orf48Q9UBA6 75 aa9.98□□□□□ -0.81
RPAIN-206ENST00000539417 SMIM1B2RUZ4 78 aa9.98□□□□□ -0.81
RPAIN-206ENST00000539417 SEC11AP67812 179 aa9.98□□□□□ -0.81
RPAIN-206ENST00000539417 MAJINQ3KP22 176 aa9.98□□□□□ -0.81
RPAIN-206ENST00000539417 TOMM7Q9P0U1 55 aa9.98□□□□□ -0.81
RPAIN-206ENST00000539417 ATP5LO75964 103 aa9.97□□□□□ -0.81
RPAIN-206ENST00000539417 IGLC3P0DOY3 106 aa9.97□□□□□ -0.81
RPAIN-206ENST00000539417 MRPL35Q9NZE8 188 aaKnown RBP9.97□□□□□ -0.81
RPAIN-206ENST00000539417 NDUFA1O15239 70 aa9.96□□□□□ -0.82
RPAIN-206ENST00000539417 SPINK8P0C7L1 97 aa9.96□□□□□ -0.82
RPAIN-206ENST00000539417 GAGE2BQ13066 116 aa9.96□□□□□ -0.82
RPAIN-206ENST00000539417 IFI27L1Q96BM0 104 aa9.96□□□□□ -0.82
RPAIN-206ENST00000539417 DPH3Q96FX2 82 aa9.96□□□□□ -0.82
RPAIN-206ENST00000539417 PKHD1L1Q86WI1 4243 aa9.95□□□□□ -0.82
RPAIN-206ENST00000539417 KRTAP10-4P60372 401 aaPredicted RBP9.95□□□□□ -0.82
RPAIN-206ENST00000539417 KRTDAPP60985 99 aa9.95□□□□□ -0.82
RPAIN-206ENST00000539417 C9orf116Q5BN46 136 aaPredicted RBP9.95□□□□□ -0.82
RPAIN-206ENST00000539417 LOC107984640A0A0U1RRK4 108 aa9.94□□□□□ -0.82
RPAIN-206ENST00000539417 C11orf86A6NJI1 115 aa9.94□□□□□ -0.82
RPAIN-206ENST00000539417 FAM229AH3BQW9 127 aa9.94□□□□□ -0.82
RPAIN-206ENST00000539417 ZNF22P17026 224 aaPredicted RBP9.94□□□□□ -0.82
RPAIN-206ENST00000539417 PTTG1IPP53801 180 aa9.94□□□□□ -0.82
RPAIN-206ENST00000539417 RNF151Q2KHN1 245 aa9.94□□□□□ -0.82
RPAIN-206ENST00000539417 STPG4Q8N801 248 aa9.94□□□□□ -0.82
RPAIN-206ENST00000539417 PLAC8Q9NZF1 115 aa9.94□□□□□ -0.82
RPAIN-206ENST00000539417 LINC00587B1AMM8 73 aa9.93□□□□□ -0.82
RPAIN-206ENST00000539417 Q8IZM0 81 aa9.93□□□□□ -0.82
RPAIN-206ENST00000539417 F8WDY8 70 aa9.92□□□□□ -0.82
RPAIN-206ENST00000539417 RPL18AQ02543 176 aaKnown RBP9.92□□□□□ -0.82
RPAIN-206ENST00000539417 Q6ZRP5 223 aa9.92□□□□□ -0.82
RPAIN-206ENST00000539417 A0A1W2PNN7 141 aa9.91□□□□□ -0.82
RPAIN-206ENST00000539417 PRSS2P07478 247 aa9.91□□□□□ -0.82
RPAIN-206ENST00000539417 C3orf79P0CE67 100 aa9.91□□□□□ -0.82
RPAIN-206ENST00000539417 C6orf226Q5I0X4 101 aa9.91□□□□□ -0.82
RPAIN-206ENST00000539417 CHTOPQ9Y3Y2 248 aaKnown RBP9.91□□□□□ -0.82
RPAIN-206ENST00000539417 COX7B2Q8TF08 81 aa9.91□□□□□ -0.82
RPAIN-206ENST00000539417 PRO1933Q9H354 126 aa9.91□□□□□ -0.82
RPAIN-206ENST00000539417 HSPB8Q9UJY1 196 aa9.91□□□□□ -0.82
RPAIN-206ENST00000539417 MYCBP2O75592 4640 aa9.9□□□□□ -0.82
RPAIN-206ENST00000539417 TRAV12-1A0A0B4J245 112 aa9.9□□□□□ -0.83
RPAIN-206ENST00000539417 LEPROTL1O95214 131 aa9.9□□□□□ -0.83
RPAIN-206ENST00000539417 DDTP30046 118 aa9.9□□□□□ -0.83
RPAIN-206ENST00000539417 VAMP8Q9BV40 100 aa9.9□□□□□ -0.83
RPAIN-206ENST00000539417 H0Y8G0 127 aa9.89□□□□□ -0.83
RPAIN-206ENST00000539417 TLX1NBP0CAT3 122 aa9.89□□□□□ -0.83
RPAIN-206ENST00000539417 CKS1BP61024 79 aa9.89□□□□□ -0.83
RPAIN-206ENST00000539417 IGLV5-39A0A0G2JS06 123 aa9.88□□□□□ -0.83
RPAIN-206ENST00000539417 TRBV30A0A0K0K1B3 111 aa9.88□□□□□ -0.83
RPAIN-206ENST00000539417 FAM168BA1KXE4 195 aa9.88□□□□□ -0.83
RPAIN-206ENST00000539417 C20orf202A1L168 122 aa9.88□□□□□ -0.83
RPAIN-206ENST00000539417 GAGE2EQ4V326 116 aa9.88□□□□□ -0.83
RPAIN-206ENST00000539417 GAGE2DQ9UEU5 116 aa9.88□□□□□ -0.83
RPAIN-206ENST00000539417 H3BRM9 83 aa9.87□□□□□ -0.83
RPAIN-206ENST00000539417 ODF1Q14990 250 aa9.87□□□□□ -0.83
RPAIN-206ENST00000539417 TMEM170BQ5T4T1 132 aa9.87□□□□□ -0.83
RPAIN-206ENST00000539417 KRTAP7-1Q8IUC3 87 aa9.87□□□□□ -0.83
RPAIN-206ENST00000539417 MAP1LC3CQ9BXW4 147 aa9.87□□□□□ -0.83
RPAIN-206ENST00000539417 LINC00474Q9P2X8 69 aa9.87□□□□□ -0.83
RPAIN-206ENST00000539417 F8VRH5 84 aa9.86□□□□□ -0.83
RPAIN-206ENST00000539417 INAFM2P0DMQ5 153 aa9.86□□□□□ -0.83
RPAIN-206ENST00000539417 HNRNPA3P51991 378 aaKnown RBP9.86□□□□□ -0.83
RPAIN-206ENST00000539417 PLA2G1BP04054 148 aaKnown RBP9.85□□□□□ -0.83
RPAIN-206ENST00000539417 RPL37AP61513 92 aaKnown RBP9.85□□□□□ -0.83
RPAIN-206ENST00000539417 PET117Q6UWS5 81 aa9.85□□□□□ -0.83
RPAIN-206ENST00000539417 PMCHL2Q9BQD1 86 aa9.85□□□□□ -0.83
RPAIN-206ENST00000539417 PKIGQ9Y2B9 76 aa9.85□□□□□ -0.83
RPAIN-206ENST00000539417 NDUFC2-KCTD14E9PQ53 114 aa9.85□□□□□ -0.83
RPAIN-206ENST00000539417 SYS1-DBNDD2H3BUS1 97 aa9.85□□□□□ -0.83
RPAIN-206ENST00000539417 C9orf129Q5T035 196 aaKnown RBP9.85□□□□□ -0.83
RPAIN-206ENST00000539417 TMEM223A0PJW6 202 aa9.84□□□□□ -0.83
RPAIN-206ENST00000539417 PAM16Q9Y3D7 125 aa9.84□□□□□ -0.83
RPAIN-206ENST00000539417 FAT3Q8TDW7 4589 aa9.83□□□□□ -0.84
RPAIN-206ENST00000539417 LRP1Q07954 4544 aaKnown RBP9.83□□□□□ -0.84
RPAIN-206ENST00000539417 CXCL5P42830 114 aa9.83□□□□□ -0.84
RPAIN-206ENST00000539417 SPATA45Q537H7 98 aa9.82□□□□□ -0.84
RPAIN-206ENST00000539417 PHF5AQ7RTV0 110 aaKnown RBP9.82□□□□□ -0.84
RPAIN-206ENST00000539417 MIEN1Q9BRT3 115 aa9.82□□□□□ -0.84
RPAIN-206ENST00000539417 CTAG1AP78358 180 aa9.81□□□□□ -0.84
RPAIN-206ENST00000539417 FAM19A5Q7Z5A7 132 aaPredicted RBP9.81□□□□□ -0.84
RPAIN-206ENST00000539417 C14orf144Q96I85 54 aa9.81□□□□□ -0.84
RPAIN-206ENST00000539417 XAGE1AQ9HD64 81 aa9.81□□□□□ -0.84
RPAIN-206ENST00000539417 FLG2Q5D862 2391 aaPredicted RBP9.81□□□□□ -0.84
RPAIN-206ENST00000539417 KRTAP11-1Q8IUC1 163 aa9.8□□□□□ -0.84
RPAIN-206ENST00000539417 LINC01545Q5VT33 79 aa9.79□□□□□ -0.84
Retrieved 100 of 20,778 RNA–protein pairs in 61.5 ms