RNA–Protein interactions for RNA: ENST00000538654.5

SNHG1-209, Transcript of small nucleolar RNA host gene 1, humanhuman

TSL 2

Gene SNHG1, Length 2,768 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNHG1-209ENST00000538654 PTPRQQ9UMZ3 2332 aa6.29□□□□□ -1.4
SNHG1-209ENST00000538654 H7BZZ5 65 aa6.29□□□□□ -1.4
SNHG1-209ENST00000538654 AVPP01185 164 aa6.29□□□□□ -1.4
SNHG1-209ENST00000538654 BRK1Q8WUW1 75 aa6.29□□□□□ -1.4
SNHG1-209ENST00000538654 SPTA1P02549 2419 aa6.28□□□□□ -1.4
SNHG1-209ENST00000538654 IGHV4-30-2A0A087WSY4 118 aa6.28□□□□□ -1.4
SNHG1-209ENST00000538654 IGKV3OR2-268A0A0C4DH90 116 aa6.28□□□□□ -1.4
SNHG1-209ENST00000538654 REG3GQ6UW15 175 aa6.28□□□□□ -1.4
SNHG1-209ENST00000538654 SMIM26A0A096LP01 95 aa6.28□□□□□ -1.4
SNHG1-209ENST00000538654 NDUFC1O43677 76 aa6.28□□□□□ -1.4
SNHG1-209ENST00000538654 DEFB114Q30KQ6 69 aa6.28□□□□□ -1.4
SNHG1-209ENST00000538654 LOC110117498A0A087WWA1 95 aa6.27□□□□□ -1.41
SNHG1-209ENST00000538654 ZNF702PQ9H963 129 aa6.27□□□□□ -1.41
SNHG1-209ENST00000538654 ASH1LQ9NR48 2969 aaKnown RBP6.27□□□□□ -1.41
SNHG1-209ENST00000538654 H3BQ85 93 aa6.27□□□□□ -1.41
SNHG1-209ENST00000538654 Q8IZM0 81 aa6.27□□□□□ -1.41
SNHG1-209ENST00000538654 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP6.27□□□□□ -1.412e-19■■■■■ 91.2
SNHG1-209ENST00000538654 TRBV6-8A0A0A6YYG3 113 aa6.26□□□□□ -1.41
SNHG1-209ENST00000538654 IGHV4-31P0DP07 118 aa6.26□□□□□ -1.41
SNHG1-209ENST00000538654 PDE6GP18545 87 aa6.26□□□□□ -1.41
SNHG1-209ENST00000538654 ATP5EP56381 51 aaPredicted RBP6.26□□□□□ -1.41
SNHG1-209ENST00000538654 RBM3P98179 157 aaKnown RBP6.26□□□□□ -1.41
SNHG1-209ENST00000538654 DEFB136Q30KP8 78 aa6.26□□□□□ -1.41
SNHG1-209ENST00000538654 IGLV4-60A0A075B6I1 120 aa6.26□□□□□ -1.41
SNHG1-209ENST00000538654 COX17Q14061 63 aa6.26□□□□□ -1.41
SNHG1-209ENST00000538654 C4orf3Q8WVX3 66 aa6.26□□□□□ -1.41
SNHG1-209ENST00000538654 C11orf68Q9H3H3 251 aaKnown RBP6.26□□□□□ -1.41
SNHG1-209ENST00000538654 TRGV2A0A075B6R0 118 aa6.25□□□□□ -1.41
SNHG1-209ENST00000538654 LOC100131303A0A0U1RQF7 123 aa6.25□□□□□ -1.41
SNHG1-209ENST00000538654 Q6ZQT0 140 aa6.25□□□□□ -1.41
SNHG1-209ENST00000538654 C16orf74Q96GX8 76 aa6.25□□□□□ -1.41
SNHG1-209ENST00000538654 NOP10Q9NPE3 64 aaKnown RBP6.25□□□□□ -1.41
SNHG1-209ENST00000538654 LINC00959A0A1B0GUT2 108 aa6.25□□□□□ -1.41
SNHG1-209ENST00000538654 DSCR9P59020 149 aa6.25□□□□□ -1.41
SNHG1-209ENST00000538654 NANOS2P60321 138 aaKnown RBP6.25□□□□□ -1.41
SNHG1-209ENST00000538654 CXCL6P80162 114 aa6.25□□□□□ -1.41
SNHG1-209ENST00000538654 TRGV4A0A0C4DH28 118 aa6.24□□□□□ -1.41
SNHG1-209ENST00000538654 C19orf84I3L1E1 186 aa6.24□□□□□ -1.41
SNHG1-209ENST00000538654 AKAP6Q13023 2319 aa6.24□□□□□ -1.41
SNHG1-209ENST00000538654 A0A096LNT2 108 aa6.24□□□□□ -1.41
SNHG1-209ENST00000538654 LINC01547P58512 204 aaPredicted RBP6.24□□□□□ -1.41
SNHG1-209ENST00000538654 C6orf223Q8N319 242 aa6.23□□□□□ -1.41
SNHG1-209ENST00000538654 SVEP1Q4LDE5 3571 aa6.23□□□□□ -1.41
SNHG1-209ENST00000538654 RNASE1P07998 156 aaKnown RBP6.23□□□□□ -1.41
SNHG1-209ENST00000538654 LINC00575Q6W349 94 aa6.23□□□□□ -1.41
SNHG1-209ENST00000538654 Q6YL49 198 aa6.23□□□□□ -1.41
SNHG1-209ENST00000538654 C18orf65Q6ZTR6 163 aa6.23□□□□□ -1.41
SNHG1-209ENST00000538654 RIF1Q5UIP0 2472 aaKnown RBP6.23□□□□□ -1.41
SNHG1-209ENST00000538654 NBASA2RRP1 2371 aa6.23□□□□□ -1.41
SNHG1-209ENST00000538654 CMC4P56277 68 aaPredicted RBP6.22□□□□□ -1.41
SNHG1-209ENST00000538654 HAMPP81172 84 aa6.22□□□□□ -1.41
SNHG1-209ENST00000538654 LAMTOR3Q9UHA4 124 aa6.22□□□□□ -1.41
SNHG1-209ENST00000538654 C6orf99Q4VX62 202 aa6.22□□□□□ -1.41
SNHG1-209ENST00000538654 F8WEM9 126 aa6.21□□□□□ -1.42
SNHG1-209ENST00000538654 C9orf66Q5T8R8 295 aa6.21□□□□□ -1.42
SNHG1-209ENST00000538654 HIVEP3Q5T1R4 2406 aa6.21□□□□□ -1.42
SNHG1-209ENST00000538654 CREBBPQ92793 2442 aa6.21□□□□□ -1.42
SNHG1-209ENST00000538654 RELNP78509 3460 aa6.21□□□□□ -1.42
SNHG1-209ENST00000538654 A0A1B0GUV1 79 aa6.2□□□□□ -1.42
SNHG1-209ENST00000538654 MUC7Q8TAX7 377 aa6.2□□□□□ -1.42
SNHG1-209ENST00000538654 PRR3P79522 188 aaKnown RBP6.2□□□□□ -1.42
SNHG1-209ENST00000538654 C16orf95Q9H693 158 aa6.2□□□□□ -1.42
SNHG1-209ENST00000538654 TRAV10A0A0B4J240 114 aa6.19□□□□□ -1.42
SNHG1-209ENST00000538654 SEC61BP60468 96 aaKnown RBP6.19□□□□□ -1.42
SNHG1-209ENST00000538654 RMI2Q96E14 147 aa6.19□□□□□ -1.42
SNHG1-209ENST00000538654 SNURFQ9Y675 71 aa6.19□□□□□ -1.42
SNHG1-209ENST00000538654 ZFHX3Q15911 3703 aa6.19□□□□□ -1.42
SNHG1-209ENST00000538654 ZFHX2Q9C0A1 2572 aaPredicted RBP6.19□□□□□ -1.42
SNHG1-209ENST00000538654 TTC28Q96AY4 2481 aa6.19□□□□□ -1.42
SNHG1-209ENST00000538654 IGHV4-28A0A0C4DH34 117 aa6.19□□□□□ -1.42
SNHG1-209ENST00000538654 FP248Q71RG6 208 aaPredicted RBP6.19□□□□□ -1.42
SNHG1-209ENST00000538654 TRBV7-6A0A0J9YX20 115 aa6.18□□□□□ -1.42
SNHG1-209ENST00000538654 NDUFS5O43920 106 aa6.18□□□□□ -1.42
SNHG1-209ENST00000538654 ERC2-IT1O76042 136 aa6.18□□□□□ -1.42
SNHG1-209ENST00000538654 ZNF706Q9Y5V0 76 aaPredicted RBP6.18□□□□□ -1.42
SNHG1-209ENST00000538654 MIFP14174 115 aa6.18□□□□□ -1.42
SNHG1-209ENST00000538654 Q6ZRU5 148 aa6.18□□□□□ -1.42
SNHG1-209ENST00000538654 Q8N3U1 123 aa6.18□□□□□ -1.42
SNHG1-209ENST00000538654 CELSR1Q9NYQ6 3014 aa6.18□□□□□ -1.42
SNHG1-209ENST00000538654 CSPG4Q6UVK1 2322 aa6.17□□□□□ -1.42
SNHG1-209ENST00000538654 TRBV7-4A0A0J9YYF1 115 aa6.17□□□□□ -1.42
SNHG1-209ENST00000538654 FSHBP01225 129 aa6.17□□□□□ -1.42
SNHG1-209ENST00000538654 KIAA0087Q14695 138 aa6.16□□□□□ -1.42
SNHG1-209ENST00000538654 CEP295Q9C0D2 2601 aa6.15□□□□□ -1.42
SNHG1-209ENST00000538654 GIG44P09565 113 aaPredicted RBP6.15□□□□□ -1.42
SNHG1-209ENST00000538654 GNLYP22749 145 aa6.15□□□□□ -1.42
SNHG1-209ENST00000538654 NREPQ16612 68 aa6.15□□□□□ -1.42
SNHG1-209ENST00000538654 IGLV9-49A0A0B4J1Y8 123 aa6.15□□□□□ -1.43
SNHG1-209ENST00000538654 TM2D3Q9BRN9 247 aa6.15□□□□□ -1.43
SNHG1-209ENST00000538654 Q6ZQY7 126 aa6.14□□□□□ -1.43
SNHG1-209ENST00000538654 M0R2N4 97 aa6.14□□□□□ -1.43
SNHG1-209ENST00000538654 IGLV6-57P01721 117 aa6.14□□□□□ -1.43
SNHG1-209ENST00000538654 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP6.14□□□□□ -1.43
SNHG1-209ENST00000538654 TMEM254Q8TBM7 123 aa6.14□□□□□ -1.43
SNHG1-209ENST00000538654 PLA2G2AP14555 144 aa6.13□□□□□ -1.43
SNHG1-209ENST00000538654 BPY2O14599 106 aa6.13□□□□□ -1.43
SNHG1-209ENST00000538654 ATRXP46100 2492 aa6.13□□□□□ -1.43
SNHG1-209ENST00000538654 CSNK1G2-AS1Q8NCQ2 148 aa6.12□□□□□ -1.43
SNHG1-209ENST00000538654 CLPSL2Q6UWE3 100 aa6.12□□□□□ -1.43
SNHG1-209ENST00000538654 CHCHD10Q8WYQ3 142 aaPredicted RBP6.12□□□□□ -1.43
Retrieved 100 of 20,778 RNA–protein pairs in 241.3 ms