RNA–Protein interactions for RNA: ENST00000534082.1

CD44-237, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 564 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-237ENST00000534082 H0YIZ8 118 aa3.63□□□□□ -1.83
CD44-237ENST00000534082 IGKV2-30P06310 120 aa3.63□□□□□ -1.83
CD44-237ENST00000534082 CXCL1P09341 107 aa3.63□□□□□ -1.83
CD44-237ENST00000534082 ESDP10768 282 aa3.63□□□□□ -1.83
CD44-237ENST00000534082 BTCP35070 178 aa3.63□□□□□ -1.83
CD44-237ENST00000534082 LRRC37A5PQ49AS3 106 aa3.63□□□□□ -1.83
CD44-237ENST00000534082 Q8N9P0 234 aaPredicted RBP3.63□□□□□ -1.83
CD44-237ENST00000534082 OR13C6PQ8NH95 151 aa3.63□□□□□ -1.83
CD44-237ENST00000534082 SCGB1C1Q8TD33 95 aa3.63□□□□□ -1.83
CD44-237ENST00000534082 TMEM167BQ9NRX6 74 aa3.63□□□□□ -1.83
CD44-237ENST00000534082 TINCRA0A1B0GVN0 87 aa3.62□□□□□ -1.83
CD44-237ENST00000534082 A0A1W2PRE2 83 aa3.62□□□□□ -1.83
CD44-237ENST00000534082 COX7A2LO14548 114 aa3.62□□□□□ -1.83
CD44-237ENST00000534082 NUPR1O60356 82 aa3.62□□□□□ -1.83
CD44-237ENST00000534082 OR5AL1P0C617 328 aa3.62□□□□□ -1.83
CD44-237ENST00000534082 RPL28P46779 137 aaKnown RBP3.62□□□□□ -1.83
CD44-237ENST00000534082 SPAG11BQ08648 103 aa3.62□□□□□ -1.83
CD44-237ENST00000534082 SS18Q15532 418 aa3.62□□□□□ -1.83
CD44-237ENST00000534082 HIST3H2BBQ8N257 126 aa3.62□□□□□ -1.83
CD44-237ENST00000534082 BTF3L4Q96K17 158 aa3.62□□□□□ -1.83
CD44-237ENST00000534082 IMMP2LQ96T52 175 aa3.62□□□□□ -1.83
CD44-237ENST00000534082 PSMG3Q9BT73 122 aaPredicted RBP3.62□□□□□ -1.83
CD44-237ENST00000534082 NAT8Q9UHE5 227 aa3.62□□□□□ -1.83
CD44-237ENST00000534082 MAP1LC3B2A6NCE7 125 aa3.61□□□□□ -1.83
CD44-237ENST00000534082 H7C423 109 aa3.61□□□□□ -1.83
CD44-237ENST00000534082 APCSP02743 223 aa3.61□□□□□ -1.83
CD44-237ENST00000534082 RAB5AP20339 215 aa3.61□□□□□ -1.83
CD44-237ENST00000534082 NTF3P20783 257 aa3.61□□□□□ -1.83
CD44-237ENST00000534082 SMAGPQ0VAQ4 97 aa3.61□□□□□ -1.83
CD44-237ENST00000534082 FAM229BQ4G0N7 80 aa3.61□□□□□ -1.83
CD44-237ENST00000534082 GAGE2EQ4V326 116 aa3.61□□□□□ -1.83
CD44-237ENST00000534082 LINC00242Q5T6M2 205 aa3.61□□□□□ -1.83
CD44-237ENST00000534082 TMUB2Q71RG4 321 aa3.61□□□□□ -1.83
CD44-237ENST00000534082 TMEM101Q96IK0 257 aa3.61□□□□□ -1.83
CD44-237ENST00000534082 MIEN1Q9BRT3 115 aa3.61□□□□□ -1.83
CD44-237ENST00000534082 SMIM3Q9BZL3 60 aa3.61□□□□□ -1.83
CD44-237ENST00000534082 MAP1LC3BQ9GZQ8 125 aa3.61□□□□□ -1.83
CD44-237ENST00000534082 TMEM126AQ9H061 195 aa3.61□□□□□ -1.83
CD44-237ENST00000534082 SPANXB1Q9NS25 103 aaPredicted RBP3.61□□□□□ -1.83
CD44-237ENST00000534082 MRPL35Q9NZE8 188 aaKnown RBP3.61□□□□□ -1.83
CD44-237ENST00000534082 GAGE2DQ9UEU5 116 aa3.61□□□□□ -1.83
CD44-237ENST00000534082 IGKV2D-26A0A0A0MRZ7 120 aa3.6□□□□□ -1.83
CD44-237ENST00000534082 G3V3Q6 166 aa3.6□□□□□ -1.83
CD44-237ENST00000534082 NCR2O95944 276 aa3.6□□□□□ -1.83
CD44-237ENST00000534082 CXorf1O96002 111 aa3.6□□□□□ -1.83
CD44-237ENST00000534082 LTAP01374 205 aa3.6□□□□□ -1.83
CD44-237ENST00000534082 TLX1NBP0CAT3 122 aa3.6□□□□□ -1.83
CD44-237ENST00000534082 UBE2G1P62253 170 aa3.6□□□□□ -1.83
CD44-237ENST00000534082 FMC1Q96HJ9 113 aa3.6□□□□□ -1.83
CD44-237ENST00000534082 SEC11CQ9BY50 192 aa3.6□□□□□ -1.83
CD44-237ENST00000534082 MAP1LC3AQ9H492 121 aa3.6□□□□□ -1.83
CD44-237ENST00000534082 SMDT1Q9H4I9 107 aa3.6□□□□□ -1.83
CD44-237ENST00000534082 PRO0628Q9UI54 55 aa3.6□□□□□ -1.83
CD44-237ENST00000534082 BORCS7-ASMTA0A0B4J1R7 106 aa3.59□□□□□ -1.83
CD44-237ENST00000534082 TAL2Q16559 108 aa3.59□□□□□ -1.83
CD44-237ENST00000534082 LCE1AQ5T7P2 110 aa3.59□□□□□ -1.83
CD44-237ENST00000534082 SPANXCQ9NY87 97 aa3.59□□□□□ -1.83
CD44-237ENST00000534082 NAT8BQ9UHF3 227 aa3.59□□□□□ -1.83
CD44-237ENST00000534082 LAMTOR2Q9Y2Q5 125 aa3.59□□□□□ -1.83
CD44-237ENST00000534082 MUC12Q9UKN1 5478 aa3.58□□□□□ -1.84
CD44-237ENST00000534082 KRTAP4-16G5E9R7 235 aaPredicted RBP3.58□□□□□ -1.84
CD44-237ENST00000534082 NDUFA1O15239 70 aa3.58□□□□□ -1.84
CD44-237ENST00000534082 BCE1O60756 84 aa3.58□□□□□ -1.84
CD44-237ENST00000534082 VPREB1P12018 145 aa3.58□□□□□ -1.84
CD44-237ENST00000534082 C10orf25Q5T742 122 aa3.58□□□□□ -1.84
CD44-237ENST00000534082 ALKAL2Q6UX46 152 aa3.58□□□□□ -1.84
CD44-237ENST00000534082 C5orf38Q86SI9 138 aa3.58□□□□□ -1.84
CD44-237ENST00000534082 CDC42SE2Q9NRR3 84 aa3.58□□□□□ -1.84
CD44-237ENST00000534082 C6orf48Q9UBA6 75 aa3.58□□□□□ -1.84
CD44-237ENST00000534082 UBE2D4Q9Y2X8 147 aa3.58□□□□□ -1.84
CD44-237ENST00000534082 A0A1B0GX51 115 aa3.57□□□□□ -1.84
CD44-237ENST00000534082 SIX6O95475 246 aa3.57□□□□□ -1.84
CD44-237ENST00000534082 ADCYAP1P18509 176 aa3.57□□□□□ -1.84
CD44-237ENST00000534082 CTRLP40313 264 aa3.57□□□□□ -1.84
CD44-237ENST00000534082 GNG4P50150 75 aa3.57□□□□□ -1.84
CD44-237ENST00000534082 NDUFA6P56556 154 aa3.57□□□□□ -1.84
CD44-237ENST00000534082 RPS28P62857 69 aaKnown RBP3.57□□□□□ -1.84
CD44-237ENST00000534082 HSD52Q0P140 79 aa3.57□□□□□ -1.84
CD44-237ENST00000534082 C9orf129Q5T035 196 aaKnown RBP3.57□□□□□ -1.84
CD44-237ENST00000534082 FAM19A1Q7Z5A9 133 aa3.57□□□□□ -1.84
CD44-237ENST00000534082 HIST1H2BLQ99880 126 aa3.57□□□□□ -1.84
CD44-237ENST00000534082 IGLV8-61A0A075B6I0 122 aa3.56□□□□□ -1.84
CD44-237ENST00000534082 J3KT08 172 aa3.56□□□□□ -1.84
CD44-237ENST00000534082 TRGC1P0CF51 173 aa3.56□□□□□ -1.84
CD44-237ENST00000534082 FABP4P15090 132 aa3.56□□□□□ -1.84
CD44-237ENST00000534082 ATP6V0CP27449 155 aa3.56□□□□□ -1.84
CD44-237ENST00000534082 RPL24P83731 157 aaKnown RBP3.56□□□□□ -1.84
CD44-237ENST00000534082 C4orf26Q17RF5 130 aa3.56□□□□□ -1.84
CD44-237ENST00000534082 SPAG11AQ6PDA7 123 aa3.56□□□□□ -1.84
CD44-237ENST00000534082 UNQ6190/PRO20217Q6UXQ8 127 aa3.56□□□□□ -1.84
CD44-237ENST00000534082 GTF2H5Q6ZYL4 71 aa3.56□□□□□ -1.84
CD44-237ENST00000534082 DAND5Q8N907 189 aa3.56□□□□□ -1.84
CD44-237ENST00000534082 NDUFC2-KCTD14E9PQ53 114 aa3.55□□□□□ -1.84
CD44-237ENST00000534082 INMT-MINDY4F8WBC2 141 aa3.55□□□□□ -1.84
CD44-237ENST00000534082 IGLC6P0CF74 106 aa3.55□□□□□ -1.84
CD44-237ENST00000534082 C3orf22Q8N5N4 141 aa3.55□□□□□ -1.84
CD44-237ENST00000534082 GATD1Q8NB37 220 aa3.55□□□□□ -1.84
CD44-237ENST00000534082 RPL39LQ96EH5 51 aaKnown RBP3.55□□□□□ -1.84
CD44-237ENST00000534082 ANAPC13Q9BS18 74 aa3.55□□□□□ -1.84
CD44-237ENST00000534082 C22orf24Q9Y442 160 aa3.55□□□□□ -1.84
Retrieved 100 of 20,778 RNA–protein pairs in 53.8 ms