RNA–Protein interactions for RNA: ENST00000533806.5

VPS28-216, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 650 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-216ENST00000533806 GAGE2BQ13066 116 aa8.13□□□□□ -1.11
VPS28-216ENST00000533806 Q6ZRP5 223 aa8.13□□□□□ -1.11
VPS28-216ENST00000533806 LINC00469Q8N7U9 141 aa8.13□□□□□ -1.11
VPS28-216ENST00000533806 LRP1Q07954 4544 aaKnown RBP8.12□□□□□ -1.11
VPS28-216ENST00000533806 ATP5LO75964 103 aa8.12□□□□□ -1.11
VPS28-216ENST00000533806 IGLC3P0DOY3 106 aa8.12□□□□□ -1.11
VPS28-216ENST00000533806 HNRNPA3P51991 378 aaKnown RBP8.12□□□□□ -1.11
VPS28-216ENST00000533806 LINC00310P59036 64 aa8.12□□□□□ -1.11
VPS28-216ENST00000533806 C6orf226Q5I0X4 101 aa8.11□□□□□ -1.11
VPS28-216ENST00000533806 DMBT1Q9UGM3 2413 aaPredicted RBP8.1□□□□□ -1.11
VPS28-216ENST00000533806 RPL18AQ02543 176 aaKnown RBP8.1□□□□□ -1.11
VPS28-216ENST00000533806 C9orf116Q5BN46 136 aaPredicted RBP8.1□□□□□ -1.11
VPS28-216ENST00000533806 PACRGQ96M98 296 aaPredicted RBP8.1□□□□□ -1.11
VPS28-216ENST00000533806 TOMM7Q9P0U1 55 aa8.1□□□□□ -1.11
VPS28-216ENST00000533806 FAT3Q8TDW7 4589 aa8.1□□□□□ -1.11
VPS28-216ENST00000533806 IGLV5-39A0A0G2JS06 123 aa8.09□□□□□ -1.11
VPS28-216ENST00000533806 NDUFC2-KCTD14E9PQ53 114 aa8.09□□□□□ -1.11
VPS28-216ENST00000533806 SCO1O75880 301 aa8.09□□□□□ -1.11
VPS28-216ENST00000533806 PRSS2P07478 247 aa8.09□□□□□ -1.11
VPS28-216ENST00000533806 CKS1BP61024 79 aa8.09□□□□□ -1.11
VPS28-216ENST00000533806 F8VRH5 84 aa8.08□□□□□ -1.12
VPS28-216ENST00000533806 SPINK8P0C7L1 97 aa8.08□□□□□ -1.12
VPS28-216ENST00000533806 ZNF22P17026 224 aaPredicted RBP8.08□□□□□ -1.12
VPS28-216ENST00000533806 NDUFA6P56556 154 aa8.08□□□□□ -1.12
VPS28-216ENST00000533806 BAGE3Q86Y29 109 aa8.08□□□□□ -1.12
VPS28-216ENST00000533806 KRTAP7-1Q8IUC3 87 aa8.08□□□□□ -1.12
VPS28-216ENST00000533806 FAM19A2Q8N3H0 131 aa8.08□□□□□ -1.12
VPS28-216ENST00000533806 C7orf33Q8WU49 177 aa8.08□□□□□ -1.12
VPS28-216ENST00000533806 TRAV12-1A0A0B4J245 112 aa8.07□□□□□ -1.12
VPS28-216ENST00000533806 NUPR1O60356 82 aa8.07□□□□□ -1.12
VPS28-216ENST00000533806 SERF1AO75920 110 aa8.07□□□□□ -1.12
VPS28-216ENST00000533806 CXCL5P42830 114 aa8.07□□□□□ -1.12
VPS28-216ENST00000533806 COX7B2Q8TF08 81 aa8.07□□□□□ -1.12
VPS28-216ENST00000533806 IFI27L1Q96BM0 104 aa8.07□□□□□ -1.12
VPS28-216ENST00000533806 FAM168BA1KXE4 195 aa8.06□□□□□ -1.12
VPS28-216ENST00000533806 C11orf86A6NJI1 115 aa8.06□□□□□ -1.12
VPS28-216ENST00000533806 KRTAP29-1A8MX34 341 aaPredicted RBP8.06□□□□□ -1.12
VPS28-216ENST00000533806 H3BRM9 83 aa8.06□□□□□ -1.12
VPS28-216ENST00000533806 HSBP1O75506 76 aa8.06□□□□□ -1.12
VPS28-216ENST00000533806 PRR3P79522 188 aaKnown RBP8.06□□□□□ -1.12
VPS28-216ENST00000533806 C9orf129Q5T035 196 aaKnown RBP8.06□□□□□ -1.12
VPS28-216ENST00000533806 GAGE2EQ4V326 116 aa8.05□□□□□ -1.12
VPS28-216ENST00000533806 GAGE2DQ9UEU5 116 aa8.05□□□□□ -1.12
VPS28-216ENST00000533806 CHTOPQ9Y3Y2 248 aaKnown RBP8.04□□□□□ -1.12
VPS28-216ENST00000533806 PHF5AQ7RTV0 110 aaKnown RBP8.03□□□□□ -1.12
VPS28-216ENST00000533806 HIST1H2BKO60814 126 aa8.02□□□□□ -1.13
VPS28-216ENST00000533806 OXTP01178 125 aa8.02□□□□□ -1.13
VPS28-216ENST00000533806 HIST1H2BJP06899 126 aa8.02□□□□□ -1.13
VPS28-216ENST00000533806 HIST1H2BOP23527 126 aa8.02□□□□□ -1.13
VPS28-216ENST00000533806 HIST1H2BBP33778 126 aa8.02□□□□□ -1.13
VPS28-216ENST00000533806 HIST1H2BDP58876 126 aa8.02□□□□□ -1.13
VPS28-216ENST00000533806 HIST1H2BCP62807 126 aa8.02□□□□□ -1.13
VPS28-216ENST00000533806 SRSF9Q13242 221 aaKnown RBP eCLIP8.02□□□□□ -1.13
VPS28-216ENST00000533806 ODF1Q14990 250 aa8.02□□□□□ -1.13
VPS28-216ENST00000533806 HIST2H2BEQ16778 126 aa8.02□□□□□ -1.13
VPS28-216ENST00000533806 HIST2H2BFQ5QNW6 126 aaPredicted RBP8.02□□□□□ -1.13
VPS28-216ENST00000533806 KRTAP11-1Q8IUC1 163 aa8.02□□□□□ -1.13
VPS28-216ENST00000533806 HIST1H2BHQ93079 126 aa8.02□□□□□ -1.13
VPS28-216ENST00000533806 HIST1H2BNQ99877 126 aa8.02□□□□□ -1.13
VPS28-216ENST00000533806 HIST1H2BMQ99879 126 aa8.02□□□□□ -1.13
VPS28-216ENST00000533806 TMEM223A0PJW6 202 aa8.01□□□□□ -1.13
VPS28-216ENST00000533806 LEPROTL1O95214 131 aa8.01□□□□□ -1.13
VPS28-216ENST00000533806 TMEM170BQ5T4T1 132 aa8.01□□□□□ -1.13
VPS28-216ENST00000533806 FAM19A5Q7Z5A7 132 aaPredicted RBP8□□□□□ -1.13
VPS28-216ENST00000533806 ZNF625Q96I27 306 aaPredicted RBP8□□□□□ -1.13
VPS28-216ENST00000533806 XAGE1AQ9HD64 81 aa8□□□□□ -1.13
VPS28-216ENST00000533806 PSORS1C2Q9UIG4 136 aa8□□□□□ -1.13
VPS28-216ENST00000533806 SERTAD4-AS1Q5TG53 156 aa7.99□□□□□ -1.13
VPS28-216ENST00000533806 M0QXV9 152 aa7.97□□□□□ -1.13
VPS28-216ENST00000533806 FABP4P15090 132 aa7.97□□□□□ -1.13
VPS28-216ENST00000533806 HSPB8Q9UJY1 196 aa7.97□□□□□ -1.13
VPS28-216ENST00000533806 PLA2G2DQ9UNK4 145 aa7.97□□□□□ -1.13
VPS28-216ENST00000533806 COA6Q5JTJ3 125 aaKnown RBP7.96□□□□□ -1.14
VPS28-216ENST00000533806 SFTA2Q6UW10 78 aa7.96□□□□□ -1.14
VPS28-216ENST00000533806 SPINK6Q6UWN8 80 aa7.96□□□□□ -1.14
VPS28-216ENST00000533806 C22orf24Q9Y442 160 aa7.96□□□□□ -1.14
VPS28-216ENST00000533806 J3QL48 77 aa7.95□□□□□ -1.14
VPS28-216ENST00000533806 MT1HL1P0DM35 61 aa7.95□□□□□ -1.14
VPS28-216ENST00000533806 COX17Q14061 63 aa7.95□□□□□ -1.14
VPS28-216ENST00000533806 TP73-AS1Q9UF72 201 aa7.95□□□□□ -1.14
VPS28-216ENST00000533806 ERG28Q9UKR5 140 aa7.95□□□□□ -1.14
VPS28-216ENST00000533806 TNXBP22105 4242 aa7.95□□□□□ -1.14
VPS28-216ENST00000533806 IGLV5-37A0A075B6J1 123 aa7.94□□□□□ -1.14
VPS28-216ENST00000533806 H0Y8G0 127 aa7.94□□□□□ -1.14
VPS28-216ENST00000533806 PLNP26678 52 aa7.93□□□□□ -1.14
VPS28-216ENST00000533806 PFN2P35080 140 aa7.93□□□□□ -1.14
VPS28-216ENST00000533806 C1orf137Q5JT78 98 aa7.93□□□□□ -1.14
VPS28-216ENST00000533806 DPM2O94777 84 aa7.92□□□□□ -1.14
VPS28-216ENST00000533806 IGLV7-43P04211 117 aa7.92□□□□□ -1.14
VPS28-216ENST00000533806 S100A1P23297 94 aa7.92□□□□□ -1.14
VPS28-216ENST00000533806 PMCHL2Q9BQD1 86 aa7.92□□□□□ -1.14
VPS28-216ENST00000533806 SND1-IT1Q9HBX3 110 aa7.92□□□□□ -1.14
VPS28-216ENST00000533806 HMCN2Q8NDA2 5059 aa7.91□□□□□ -1.14
VPS28-216ENST00000533806 TSPEAR-AS2P59090 65 aa7.91□□□□□ -1.14
VPS28-216ENST00000533806 LBHQ53QV2 105 aaPredicted RBP7.91□□□□□ -1.14
VPS28-216ENST00000533806 MRPL55Q7Z7F7 128 aaKnown RBP7.91□□□□□ -1.14
VPS28-216ENST00000533806 LINC01600Q96MT4 127 aa7.91□□□□□ -1.14
VPS28-216ENST00000533806 MAP1LC3CQ9BXW4 147 aa7.91□□□□□ -1.14
VPS28-216ENST00000533806 SYS1-DBNDD2H3BUS1 97 aa7.9□□□□□ -1.14
VPS28-216ENST00000533806 ATP6V1G1O75348 118 aa7.9□□□□□ -1.14
Retrieved 100 of 20,778 RNA–protein pairs in 158.6 ms