RNA–Protein interactions for RNA: ENST00000532725.1

CPSF1-209, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 2

Gene CPSF1, Length 597 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-209ENST00000532725 SMIM1B2RUZ4 78 aa12.51□□□□□ -0.41
CPSF1-209ENST00000532725 PRSS2P07478 247 aa12.51□□□□□ -0.41
CPSF1-209ENST00000532725 TLX1NBP0CAT3 122 aa12.51□□□□□ -0.41
CPSF1-209ENST00000532725 TOMM7Q9P0U1 55 aa12.51□□□□□ -0.41
CPSF1-209ENST00000532725 TRBV30A0A0K0K1B3 111 aa12.5□□□□□ -0.41
CPSF1-209ENST00000532725 LINC00310P59036 64 aa12.5□□□□□ -0.41
CPSF1-209ENST00000532725 FAM19A2Q8N3H0 131 aa12.5□□□□□ -0.41
CPSF1-209ENST00000532725 HSBP1O75506 76 aa12.49□□□□□ -0.41
CPSF1-209ENST00000532725 FLG2Q5D862 2391 aaPredicted RBP12.48□□□□□ -0.41
CPSF1-209ENST00000532725 SERF1AO75920 110 aa12.48□□□□□ -0.41
CPSF1-209ENST00000532725 CKS1BP61024 79 aa12.48□□□□□ -0.41
CPSF1-209ENST00000532725 RPL37AP61513 92 aaKnown RBP12.48□□□□□ -0.41
CPSF1-209ENST00000532725 RPL18AQ02543 176 aaKnown RBP12.48□□□□□ -0.41
CPSF1-209ENST00000532725 Q6ZRP5 223 aa12.48□□□□□ -0.41
CPSF1-209ENST00000532725 IFI27L1Q96BM0 104 aa12.48□□□□□ -0.41
CPSF1-209ENST00000532725 A0A1W2PNN7 141 aa12.47□□□□□ -0.41
CPSF1-209ENST00000532725 NUPR1O60356 82 aa12.47□□□□□ -0.41
CPSF1-209ENST00000532725 SPINK8P0C7L1 97 aa12.47□□□□□ -0.41
CPSF1-209ENST00000532725 C9orf116Q5BN46 136 aaPredicted RBP12.47□□□□□ -0.41
CPSF1-209ENST00000532725 TRAV12-1A0A0B4J245 112 aa12.45□□□□□ -0.42
CPSF1-209ENST00000532725 H3BRM9 83 aa12.45□□□□□ -0.42
CPSF1-209ENST00000532725 ZNF22P17026 224 aaPredicted RBP12.45□□□□□ -0.42
CPSF1-209ENST00000532725 COX7B2Q8TF08 81 aa12.45□□□□□ -0.42
CPSF1-209ENST00000532725 C11orf86A6NJI1 115 aa12.44□□□□□ -0.42
CPSF1-209ENST00000532725 CHTOPQ9Y3Y2 248 aaKnown RBP12.44□□□□□ -0.42
CPSF1-209ENST00000532725 IGLV5-39A0A0G2JS06 123 aa12.43□□□□□ -0.42
CPSF1-209ENST00000532725 NDUFC2-KCTD14E9PQ53 114 aa12.43□□□□□ -0.42
CPSF1-209ENST00000532725 F8VRH5 84 aa12.43□□□□□ -0.42
CPSF1-209ENST00000532725 CXCL5P42830 114 aa12.43□□□□□ -0.42
CPSF1-209ENST00000532725 C7orf33Q8WU49 177 aa12.43□□□□□ -0.42
CPSF1-209ENST00000532725 GAGE2EQ4V326 116 aa12.42□□□□□ -0.42
CPSF1-209ENST00000532725 GAGE2DQ9UEU5 116 aa12.42□□□□□ -0.42
CPSF1-209ENST00000532725 HIST1H2BKO60814 126 aa12.41□□□□□ -0.42
CPSF1-209ENST00000532725 HIST1H2BJP06899 126 aa12.41□□□□□ -0.42
CPSF1-209ENST00000532725 HIST1H2BOP23527 126 aa12.41□□□□□ -0.42
CPSF1-209ENST00000532725 HIST1H2BBP33778 126 aa12.41□□□□□ -0.42
CPSF1-209ENST00000532725 HIST1H2BDP58876 126 aa12.41□□□□□ -0.42
CPSF1-209ENST00000532725 HIST1H2BCP62807 126 aa12.41□□□□□ -0.42
CPSF1-209ENST00000532725 HIST2H2BEQ16778 126 aa12.41□□□□□ -0.42
CPSF1-209ENST00000532725 HIST2H2BFQ5QNW6 126 aaPredicted RBP12.41□□□□□ -0.42
CPSF1-209ENST00000532725 HIST1H2BHQ93079 126 aa12.41□□□□□ -0.42
CPSF1-209ENST00000532725 HIST1H2BNQ99877 126 aa12.41□□□□□ -0.42
CPSF1-209ENST00000532725 HIST1H2BMQ99879 126 aa12.41□□□□□ -0.42
CPSF1-209ENST00000532725 MYCBP2O75592 4640 aa12.41□□□□□ -0.42
CPSF1-209ENST00000532725 LEPROTL1O95214 131 aa12.4□□□□□ -0.42
CPSF1-209ENST00000532725 FAM168BA1KXE4 195 aa12.38□□□□□ -0.43
CPSF1-209ENST00000532725 HNRNPA3P51991 378 aaKnown RBP12.38□□□□□ -0.43
CPSF1-209ENST00000532725 TMEM170BQ5T4T1 132 aa12.38□□□□□ -0.43
CPSF1-209ENST00000532725 C9orf129Q5T035 196 aaKnown RBP12.37□□□□□ -0.43
CPSF1-209ENST00000532725 KRTAP7-1Q8IUC3 87 aa12.37□□□□□ -0.43
CPSF1-209ENST00000532725 FABP4P15090 132 aa12.36□□□□□ -0.43
CPSF1-209ENST00000532725 S100A1P23297 94 aa12.35□□□□□ -0.43
CPSF1-209ENST00000532725 ODF1Q14990 250 aa12.35□□□□□ -0.43
CPSF1-209ENST00000532725 HSPB8Q9UJY1 196 aa12.35□□□□□ -0.43
CPSF1-209ENST00000532725 TMEM223A0PJW6 202 aa12.34□□□□□ -0.43
CPSF1-209ENST00000532725 PHF5AQ7RTV0 110 aaKnown RBP12.34□□□□□ -0.43
CPSF1-209ENST00000532725 PRR3P79522 188 aaKnown RBP12.33□□□□□ -0.44
CPSF1-209ENST00000532725 PKHD1L1Q86WI1 4243 aa12.32□□□□□ -0.44
CPSF1-209ENST00000532725 H0Y8G0 127 aa12.32□□□□□ -0.44
CPSF1-209ENST00000532725 XAGE1AQ9HD64 81 aa12.32□□□□□ -0.44
CPSF1-209ENST00000532725 FAM19A5Q7Z5A7 132 aaPredicted RBP12.31□□□□□ -0.44
CPSF1-209ENST00000532725 ATP6V1G1O75348 118 aa12.3□□□□□ -0.44
CPSF1-209ENST00000532725 LRP1Q07954 4544 aaKnown RBP12.3□□□□□ -0.44
CPSF1-209ENST00000532725 ZNF625Q96I27 306 aaPredicted RBP12.29□□□□□ -0.44
CPSF1-209ENST00000532725 KRTAP29-1A8MX34 341 aaPredicted RBP12.28□□□□□ -0.44
CPSF1-209ENST00000532725 COA6Q5JTJ3 125 aaKnown RBP12.28□□□□□ -0.44
CPSF1-209ENST00000532725 DMBT1Q9UGM3 2413 aaPredicted RBP12.27□□□□□ -0.44
CPSF1-209ENST00000532725 SERTAD4-AS1Q5TG53 156 aa12.27□□□□□ -0.45
CPSF1-209ENST00000532725 KRTAP11-1Q8IUC1 163 aa12.27□□□□□ -0.45
CPSF1-209ENST00000532725 MAP1LC3CQ9BXW4 147 aa12.27□□□□□ -0.45
CPSF1-209ENST00000532725 PSORS1C2Q9UIG4 136 aa12.27□□□□□ -0.45
CPSF1-209ENST00000532725 M0QXV9 152 aa12.26□□□□□ -0.45
CPSF1-209ENST00000532725 SFTA2Q6UW10 78 aa12.26□□□□□ -0.45
CPSF1-209ENST00000532725 FAT3Q8TDW7 4589 aa12.25□□□□□ -0.45
CPSF1-209ENST00000532725 PLNP26678 52 aa12.25□□□□□ -0.45
CPSF1-209ENST00000532725 PFN2P35080 140 aa12.25□□□□□ -0.45
CPSF1-209ENST00000532725 SRSF9Q13242 221 aaKnown RBP eCLIP12.25□□□□□ -0.45
CPSF1-209ENST00000532725 PMCHL2Q9BQD1 86 aa12.25□□□□□ -0.45
CPSF1-209ENST00000532725 ERG28Q9UKR5 140 aa12.25□□□□□ -0.45
CPSF1-209ENST00000532725 DPM2O94777 84 aa12.24□□□□□ -0.45
CPSF1-209ENST00000532725 COX17Q14061 63 aa12.24□□□□□ -0.45
CPSF1-209ENST00000532725 C22orf24Q9Y442 160 aa12.24□□□□□ -0.45
CPSF1-209ENST00000532725 OXTP01178 125 aa12.23□□□□□ -0.45
CPSF1-209ENST00000532725 PLA2G2DQ9UNK4 145 aa12.23□□□□□ -0.45
CPSF1-209ENST00000532725 SYS1-DBNDD2H3BUS1 97 aa12.22□□□□□ -0.45
CPSF1-209ENST00000532725 IGKCP01834 107 aa12.22□□□□□ -0.45
CPSF1-209ENST00000532725 HERC1Q15751 4861 aa12.2□□□□□ -0.46
CPSF1-209ENST00000532725 C1orf137Q5JT78 98 aa12.2□□□□□ -0.46
CPSF1-209ENST00000532725 SPINK6Q6UWN8 80 aa12.2□□□□□ -0.46
CPSF1-209ENST00000532725 TP73-AS1Q9UF72 201 aa12.2□□□□□ -0.46
CPSF1-209ENST00000532725 J3QL48 77 aa12.19□□□□□ -0.46
CPSF1-209ENST00000532725 LEPROTO15243 131 aa12.19□□□□□ -0.46
CPSF1-209ENST00000532725 SND1-IT1Q9HBX3 110 aa12.19□□□□□ -0.46
CPSF1-209ENST00000532725 UBE2BP63146 152 aa12.18□□□□□ -0.46
CPSF1-209ENST00000532725 LBHQ53QV2 105 aaPredicted RBP12.18□□□□□ -0.46
CPSF1-209ENST00000532725 NDUFA12Q9UI09 145 aa12.18□□□□□ -0.46
CPSF1-209ENST00000532725 IGLV5-37A0A075B6J1 123 aa12.17□□□□□ -0.46
CPSF1-209ENST00000532725 TSPEAR-AS2P59090 65 aa12.17□□□□□ -0.46
CPSF1-209ENST00000532725 PET117Q6UWS5 81 aa12.17□□□□□ -0.46
CPSF1-209ENST00000532725 MRPL55Q7Z7F7 128 aaKnown RBP12.17□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 100.8 ms