RNA–Protein interactions for RNA: ENST00000529563.5

USH1C-208, Transcript of USH1 protein network component harmonin, humanhuman

TSL 2

Gene USH1C, Length 942 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USH1C-208ENST00000529563 CARD19Q96LW7 228 aa7.66□□□□□ -1.18
USH1C-208ENST00000529563 IGLV4-69A0A075B6H9 119 aa7.65□□□□□ -1.18
USH1C-208ENST00000529563 A0A087WZ39 114 aa7.65□□□□□ -1.18
USH1C-208ENST00000529563 TINCRA0A1B0GVN0 87 aa7.65□□□□□ -1.18
USH1C-208ENST00000529563 FABP4P15090 132 aa7.65□□□□□ -1.18
USH1C-208ENST00000529563 CKS1BP61024 79 aa7.65□□□□□ -1.18
USH1C-208ENST00000529563 PRR3P79522 188 aaKnown RBP7.65□□□□□ -1.18
USH1C-208ENST00000529563 SYCNQ0VAF6 134 aa7.65□□□□□ -1.18
USH1C-208ENST00000529563 PDZD11Q5EBL8 140 aa7.65□□□□□ -1.18
USH1C-208ENST00000529563 C6orf226Q5I0X4 101 aa7.65□□□□□ -1.18
USH1C-208ENST00000529563 REG3GQ6UW15 175 aa7.65□□□□□ -1.18
USH1C-208ENST00000529563 FAM104AQ969W3 186 aa7.65□□□□□ -1.18
USH1C-208ENST00000529563 A0A096LNJ9 63 aa7.64□□□□□ -1.19
USH1C-208ENST00000529563 HIST1H2BKO60814 126 aa7.64□□□□□ -1.19
USH1C-208ENST00000529563 HIST1H2BJP06899 126 aa7.64□□□□□ -1.19
USH1C-208ENST00000529563 HIST1H2BOP23527 126 aa7.64□□□□□ -1.19
USH1C-208ENST00000529563 HIST1H2BBP33778 126 aa7.64□□□□□ -1.19
USH1C-208ENST00000529563 HIST1H2BDP58876 126 aa7.64□□□□□ -1.19
USH1C-208ENST00000529563 HIST1H2BCP62807 126 aa7.64□□□□□ -1.19
USH1C-208ENST00000529563 HIST2H2BEQ16778 126 aa7.64□□□□□ -1.19
USH1C-208ENST00000529563 HIST2H2BFQ5QNW6 126 aaPredicted RBP7.64□□□□□ -1.19
USH1C-208ENST00000529563 LINC01561Q8N1V8 128 aa7.64□□□□□ -1.19
USH1C-208ENST00000529563 HIST1H2BHQ93079 126 aa7.64□□□□□ -1.19
USH1C-208ENST00000529563 LINC00526Q96FQ7 95 aa7.64□□□□□ -1.19
USH1C-208ENST00000529563 HIST1H2BNQ99877 126 aa7.64□□□□□ -1.19
USH1C-208ENST00000529563 HIST1H2BMQ99879 126 aa7.64□□□□□ -1.19
USH1C-208ENST00000529563 CHTOPQ9Y3Y2 248 aaKnown RBP7.64□□□□□ -1.19
USH1C-208ENST00000529563 A0A096LNI7 61 aa7.63□□□□□ -1.19
USH1C-208ENST00000529563 F8WDY8 70 aa7.63□□□□□ -1.19
USH1C-208ENST00000529563 NDUFA1O15239 70 aa7.63□□□□□ -1.19
USH1C-208ENST00000529563 TMEM170BQ5T4T1 132 aa7.63□□□□□ -1.19
USH1C-208ENST00000529563 C2orf48Q96LS8 159 aa7.63□□□□□ -1.19
USH1C-208ENST00000529563 MAP1LC3CQ9BXW4 147 aa7.63□□□□□ -1.19
USH1C-208ENST00000529563 CDKN2A-AS1Q9UH64 79 aa7.63□□□□□ -1.19
USH1C-208ENST00000529563 FAM19A3Q7Z5A8 133 aa7.62□□□□□ -1.19
USH1C-208ENST00000529563 LINC01600Q96MT4 127 aa7.62□□□□□ -1.19
USH1C-208ENST00000529563 S100A6P06703 90 aa7.61□□□□□ -1.19
USH1C-208ENST00000529563 TRAV12-1A0A0B4J245 112 aa7.6□□□□□ -1.19
USH1C-208ENST00000529563 IGLC3P0DOY3 106 aa7.6□□□□□ -1.19
USH1C-208ENST00000529563 GAGE2BQ13066 116 aa7.6□□□□□ -1.19
USH1C-208ENST00000529563 SPINK6Q6UWN8 80 aa7.6□□□□□ -1.19
USH1C-208ENST00000529563 Q6ZRP5 223 aa7.6□□□□□ -1.19
USH1C-208ENST00000529563 LOC107984640A0A0U1RRK4 108 aa7.59□□□□□ -1.19
USH1C-208ENST00000529563 SPINK8P0C7L1 97 aa7.59□□□□□ -1.19
USH1C-208ENST00000529563 RPL18AQ02543 176 aaKnown RBP7.59□□□□□ -1.19
USH1C-208ENST00000529563 Q8IZM0 81 aa7.59□□□□□ -1.19
USH1C-208ENST00000529563 F8VRH5 84 aa7.58□□□□□ -1.2
USH1C-208ENST00000529563 NUPR1O60356 82 aa7.58□□□□□ -1.2
USH1C-208ENST00000529563 S100A2P29034 98 aa7.58□□□□□ -1.2
USH1C-208ENST00000529563 CXCL5P42830 114 aa7.58□□□□□ -1.2
USH1C-208ENST00000529563 COX7B2Q8TF08 81 aa7.58□□□□□ -1.2
USH1C-208ENST00000529563 PLNP26678 52 aa7.57□□□□□ -1.2
USH1C-208ENST00000529563 MRPL35Q9NZE8 188 aaKnown RBP7.57□□□□□ -1.2
USH1C-208ENST00000529563 IGLV5-45A0A087WSX0 123 aa7.56□□□□□ -1.2
USH1C-208ENST00000529563 TRBV30A0A0K0K1B3 111 aa7.56□□□□□ -1.2
USH1C-208ENST00000529563 SMIM1B2RUZ4 78 aa7.56□□□□□ -1.2
USH1C-208ENST00000529563 ZNF22P17026 224 aaPredicted RBP7.56□□□□□ -1.2
USH1C-208ENST00000529563 LINC00310P59036 64 aa7.56□□□□□ -1.2
USH1C-208ENST00000529563 HERVK_113P61574 105 aa7.56□□□□□ -1.2
USH1C-208ENST00000529563 ODF1Q14990 250 aa7.56□□□□□ -1.2
USH1C-208ENST00000529563 RNF151Q2KHN1 245 aa7.56□□□□□ -1.2
USH1C-208ENST00000529563 UNQ6190/PRO20217Q6UXQ8 127 aa7.56□□□□□ -1.2
USH1C-208ENST00000529563 C20orf202A1L168 122 aa7.55□□□□□ -1.2
USH1C-208ENST00000529563 C11orf86A6NJI1 115 aa7.55□□□□□ -1.2
USH1C-208ENST00000529563 DPM2O94777 84 aa7.55□□□□□ -1.2
USH1C-208ENST00000529563 PTTG1IPP53801 180 aa7.55□□□□□ -1.2
USH1C-208ENST00000529563 C2orf82Q6UX34 121 aa7.55□□□□□ -1.2
USH1C-208ENST00000529563 IGKCP01834 107 aa7.54□□□□□ -1.2
USH1C-208ENST00000529563 KRTDAPP60985 99 aa7.54□□□□□ -1.2
USH1C-208ENST00000529563 SFTA2Q6UW10 78 aa7.54□□□□□ -1.2
USH1C-208ENST00000529563 KIAA0087Q14695 138 aa7.53□□□□□ -1.2
USH1C-208ENST00000529563 GAGE2EQ4V326 116 aa7.53□□□□□ -1.2
USH1C-208ENST00000529563 COA6Q5JTJ3 125 aaKnown RBP7.53□□□□□ -1.2
USH1C-208ENST00000529563 GAGE2DQ9UEU5 116 aa7.53□□□□□ -1.2
USH1C-208ENST00000529563 SYS1-DBNDD2H3BUS1 97 aa7.52□□□□□ -1.21
USH1C-208ENST00000529563 C10orf25Q5T742 122 aa7.52□□□□□ -1.21
USH1C-208ENST00000529563 PET117Q6UWS5 81 aa7.52□□□□□ -1.21
USH1C-208ENST00000529563 PMCHL2Q9BQD1 86 aa7.52□□□□□ -1.21
USH1C-208ENST00000529563 C6orf48Q9UBA6 75 aa7.52□□□□□ -1.21
USH1C-208ENST00000529563 AKR1D1P51857 326 aa7.51□□□□□ -1.21
USH1C-208ENST00000529563 KRTAP10-8P60410 259 aa7.51□□□□□ -1.21
USH1C-208ENST00000529563 SRSF9Q13242 221 aaKnown RBP eCLIP7.51□□□□□ -1.21
USH1C-208ENST00000529563 C1orf137Q5JT78 98 aa7.51□□□□□ -1.21
USH1C-208ENST00000529563 LRP2P98164 4655 aa7.5□□□□□ -1.21
USH1C-208ENST00000529563 TMEM223A0PJW6 202 aa7.5□□□□□ -1.21
USH1C-208ENST00000529563 NDUFC2-KCTD14E9PQ53 114 aa7.5□□□□□ -1.21
USH1C-208ENST00000529563 C9orf116Q5BN46 136 aaPredicted RBP7.5□□□□□ -1.21
USH1C-208ENST00000529563 TNXBP22105 4242 aa7.49□□□□□ -1.21
USH1C-208ENST00000529563 IGLV5-39A0A0G2JS06 123 aa7.49□□□□□ -1.21
USH1C-208ENST00000529563 A0A1W2PNN7 141 aa7.49□□□□□ -1.21
USH1C-208ENST00000529563 LGALS3P17931 250 aaKnown RBP7.49□□□□□ -1.21
USH1C-208ENST00000529563 PLEKHB2Q96CS7 222 aa7.49□□□□□ -1.21
USH1C-208ENST00000529563 PSORS1C2Q9UIG4 136 aa7.49□□□□□ -1.21
USH1C-208ENST00000529563 LINC00587B1AMM8 73 aa7.48□□□□□ -1.21
USH1C-208ENST00000529563 TLX1NBP0CAT3 122 aa7.48□□□□□ -1.21
USH1C-208ENST00000529563 C3orf79P0CE67 100 aa7.48□□□□□ -1.21
USH1C-208ENST00000529563 PFN2P35080 140 aa7.48□□□□□ -1.21
USH1C-208ENST00000529563 MEIG1Q5JSS6 88 aa7.48□□□□□ -1.21
USH1C-208ENST00000529563 ZNF625Q96I27 306 aaPredicted RBP7.48□□□□□ -1.21
USH1C-208ENST00000529563 MYMXA0A1B0GTQ4 84 aa7.47□□□□□ -1.21
Retrieved 100 of 20,778 RNA–protein pairs in 81 ms