RNA–Protein interactions for RNA: ENST00000523511.1

LSM1-205, Transcript of LSM1 homolog, mRNA degradation associated, humanhuman

TSL 3

Gene LSM1, Length 700 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1-205ENST00000523511 HNRNPA3P51991 378 aaKnown RBP10.17□□□□□ -0.78
LSM1-205ENST00000523511 GAGE2EQ4V326 116 aa10.17□□□□□ -0.78
LSM1-205ENST00000523511 SPINK6Q6UWN8 80 aa10.17□□□□□ -0.78
LSM1-205ENST00000523511 CST9LQ9H4G1 147 aa10.17□□□□□ -0.78
LSM1-205ENST00000523511 GAGE2DQ9UEU5 116 aa10.17□□□□□ -0.78
LSM1-205ENST00000523511 DMBT1Q9UGM3 2413 aaPredicted RBP10.17□□□□□ -0.78
LSM1-205ENST00000523511 H3BRM9 83 aa10.16□□□□□ -0.78
LSM1-205ENST00000523511 C2orf82Q6UX34 121 aa10.16□□□□□ -0.78
LSM1-205ENST00000523511 PDZD11Q5EBL8 140 aa10.15□□□□□ -0.78
LSM1-205ENST00000523511 REG3GQ6UW15 175 aa10.15□□□□□ -0.78
LSM1-205ENST00000523511 F8VRH5 84 aa10.14□□□□□ -0.79
LSM1-205ENST00000523511 NDUFA6P56556 154 aa10.14□□□□□ -0.79
LSM1-205ENST00000523511 C18orf32Q8TCD1 76 aa10.14□□□□□ -0.79
LSM1-205ENST00000523511 ATP5LO75964 103 aa10.13□□□□□ -0.79
LSM1-205ENST00000523511 HBDP02042 147 aa10.13□□□□□ -0.79
LSM1-205ENST00000523511 HERC1Q15751 4861 aa10.12□□□□□ -0.79
LSM1-205ENST00000523511 IGLV5-45A0A087WSX0 123 aa10.11□□□□□ -0.79
LSM1-205ENST00000523511 PHF5AQ7RTV0 110 aaKnown RBP10.11□□□□□ -0.79
LSM1-205ENST00000523511 COX7B2Q8TF08 81 aa10.11□□□□□ -0.79
LSM1-205ENST00000523511 UBE2BP63146 152 aa10.1□□□□□ -0.79
LSM1-205ENST00000523511 FAM19A5Q7Z5A7 132 aaPredicted RBP10.1□□□□□ -0.79
LSM1-205ENST00000523511 SMIM1B2RUZ4 78 aa10.09□□□□□ -0.79
LSM1-205ENST00000523511 C1orf137Q5JT78 98 aa10.09□□□□□ -0.79
LSM1-205ENST00000523511 PSORS1C2Q9UIG4 136 aa10.09□□□□□ -0.79
LSM1-205ENST00000523511 SRSF9Q13242 221 aaKnown RBP eCLIP10.08□□□□□ -0.8
LSM1-205ENST00000523511 LBHQ53QV2 105 aaPredicted RBP10.08□□□□□ -0.8
LSM1-205ENST00000523511 CHCHD1Q96BP2 118 aaKnown RBP10.08□□□□□ -0.8
LSM1-205ENST00000523511 FAM168BA1KXE4 195 aa10.07□□□□□ -0.8
LSM1-205ENST00000523511 M0QXV9 152 aa10.07□□□□□ -0.8
LSM1-205ENST00000523511 LINC01600Q96MT4 127 aa10.07□□□□□ -0.8
LSM1-205ENST00000523511 SPINK8P0C7L1 97 aa10.06□□□□□ -0.8
LSM1-205ENST00000523511 IGLC3P0DOY3 106 aa10.06□□□□□ -0.8
LSM1-205ENST00000523511 BAGE3Q86Y29 109 aa10.06□□□□□ -0.8
LSM1-205ENST00000523511 URB1-AS1Q96HZ7 61 aa10.05□□□□□ -0.8
LSM1-205ENST00000523511 A0A096LNJ9 63 aa10.04□□□□□ -0.8
LSM1-205ENST00000523511 ODF1Q14990 250 aa10.04□□□□□ -0.8
LSM1-205ENST00000523511 PMCHL1Q16048 86 aa10.04□□□□□ -0.8
LSM1-205ENST00000523511 C9orf129Q5T035 196 aaKnown RBP10.04□□□□□ -0.8
LSM1-205ENST00000523511 SFTA2Q6UW10 78 aa10.04□□□□□ -0.8
LSM1-205ENST00000523511 DIRC1Q969H9 104 aa10.04□□□□□ -0.8
LSM1-205ENST00000523511 YPEL4Q96NS1 127 aa10.04□□□□□ -0.8
LSM1-205ENST00000523511 HSBP1O75506 76 aa10.02□□□□□ -0.81
LSM1-205ENST00000523511 IGLV7-43P04211 117 aa10.02□□□□□ -0.81
LSM1-205ENST00000523511 TMEM170BQ5T4T1 132 aa10.02□□□□□ -0.81
LSM1-205ENST00000523511 XAGE1AQ9HD64 81 aa10.02□□□□□ -0.81
LSM1-205ENST00000523511 C22orf24Q9Y442 160 aa10.02□□□□□ -0.81
LSM1-205ENST00000523511 CBLN2Q8IUK8 224 aa10.01□□□□□ -0.81
LSM1-205ENST00000523511 CHTOPQ9Y3Y2 248 aaKnown RBP10.01□□□□□ -0.81
LSM1-205ENST00000523511 PKHD1L1Q86WI1 4243 aa10.01□□□□□ -0.81
LSM1-205ENST00000523511 LRP1Q07954 4544 aaKnown RBP10□□□□□ -0.81
LSM1-205ENST00000523511 MT1HL1P0DM35 61 aa10□□□□□ -0.81
LSM1-205ENST00000523511 ZNF22P17026 224 aaPredicted RBP10□□□□□ -0.81
LSM1-205ENST00000523511 IFI27L1Q96BM0 104 aa10□□□□□ -0.81
LSM1-205ENST00000523511 TP73-AS1Q9UF72 201 aa10□□□□□ -0.81
LSM1-205ENST00000523511 PLA2G2DQ9UNK4 145 aa10□□□□□ -0.81
LSM1-205ENST00000523511 TRAV12-1A0A0B4J245 112 aa9.99□□□□□ -0.81
LSM1-205ENST00000523511 IGLV5-39A0A0G2JS06 123 aa9.99□□□□□ -0.81
LSM1-205ENST00000523511 NUPR1O60356 82 aa9.99□□□□□ -0.81
LSM1-205ENST00000523511 COX17Q14061 63 aa9.99□□□□□ -0.81
LSM1-205ENST00000523511 MRPL55Q7Z7F7 128 aaKnown RBP9.98□□□□□ -0.81
LSM1-205ENST00000523511 SLC7A5P1Q8MH63 180 aa9.98□□□□□ -0.81
LSM1-205ENST00000523511 FAT3Q8TDW7 4589 aa9.98□□□□□ -0.81
LSM1-205ENST00000523511 TRGC2P03986 189 aa9.97□□□□□ -0.81
LSM1-205ENST00000523511 KRTAP7-1Q8IUC3 87 aa9.97□□□□□ -0.81
LSM1-205ENST00000523511 C11orf86A6NJI1 115 aa9.96□□□□□ -0.82
LSM1-205ENST00000523511 PFN2P35080 140 aa9.96□□□□□ -0.82
LSM1-205ENST00000523511 NKAPP1Q8N9T2 125 aa9.96□□□□□ -0.82
LSM1-205ENST00000523511 H0Y9J4 135 aa9.94□□□□□ -0.82
LSM1-205ENST00000523511 KRTAP10-8P60410 259 aa9.94□□□□□ -0.82
LSM1-205ENST00000523511 RPL24P83731 157 aaKnown RBP9.94□□□□□ -0.82
LSM1-205ENST00000523511 ERG28Q9UKR5 140 aa9.94□□□□□ -0.82
LSM1-205ENST00000523511 LEPROTL1O95214 131 aa9.93□□□□□ -0.82
LSM1-205ENST00000523511 LINC00587B1AMM8 73 aa9.92□□□□□ -0.82
LSM1-205ENST00000523511 ZNF861PO60384 105 aa9.92□□□□□ -0.82
LSM1-205ENST00000523511 ATP6V1G1O75348 118 aa9.92□□□□□ -0.82
LSM1-205ENST00000523511 KRTAP11-1Q8IUC1 163 aa9.92□□□□□ -0.82
LSM1-205ENST00000523511 FAM19A2Q8N3H0 131 aa9.92□□□□□ -0.82
LSM1-205ENST00000523511 HSPB8Q9UJY1 196 aa9.92□□□□□ -0.82
LSM1-205ENST00000523511 IGLV5-37A0A075B6J1 123 aa9.91□□□□□ -0.82
LSM1-205ENST00000523511 RPL28P46779 137 aaKnown RBP9.91□□□□□ -0.82
LSM1-205ENST00000523511 LINC00167Q96N53 147 aa9.91□□□□□ -0.82
LSM1-205ENST00000523511 TMEM223A0PJW6 202 aa9.9□□□□□ -0.82
LSM1-205ENST00000523511 ZNF625Q96I27 306 aaPredicted RBP9.9□□□□□ -0.82
LSM1-205ENST00000523511 COLCA2A8K830 154 aa9.89□□□□□ -0.83
LSM1-205ENST00000523511 H0Y8G0 127 aa9.89□□□□□ -0.83
LSM1-205ENST00000523511 BCE1O60756 84 aa9.89□□□□□ -0.83
LSM1-205ENST00000523511 LINC00158P58513 81 aa9.89□□□□□ -0.83
LSM1-205ENST00000523511 IGLV1-50A0A075B6I6 118 aa9.88□□□□□ -0.83
LSM1-205ENST00000523511 RPL37AP8A6NKH3 93 aa9.88□□□□□ -0.83
LSM1-205ENST00000523511 SERF1AO75920 110 aa9.88□□□□□ -0.83
LSM1-205ENST00000523511 HERV-K104P63124 156 aa9.88□□□□□ -0.83
LSM1-205ENST00000523511 SND1-IT1Q9HBX3 110 aa9.88□□□□□ -0.83
LSM1-205ENST00000523511 GAGE10A6NGK3 116 aa9.87□□□□□ -0.83
LSM1-205ENST00000523511 PLNP26678 52 aa9.87□□□□□ -0.83
LSM1-205ENST00000523511 RPL13AP40429 203 aaKnown RBP9.87□□□□□ -0.83
LSM1-205ENST00000523511 MAP1LC3CQ9BXW4 147 aa9.86□□□□□ -0.83
LSM1-205ENST00000523511 MYMXA0A1B0GTQ4 84 aa9.85□□□□□ -0.83
LSM1-205ENST00000523511 FABP4P15090 132 aa9.85□□□□□ -0.83
LSM1-205ENST00000523511 HERVK_113P61574 105 aa9.85□□□□□ -0.83
LSM1-205ENST00000523511 MEIG1Q5JSS6 88 aa9.85□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 56.1 ms