RNA–Protein interactions for RNA: ENST00000509769.5

USP53-205, Transcript of ubiquitin specific peptidase 53, humanhuman

TSL 1 (best)

Gene USP53, Length 4,803 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-205ENST00000509769 Q6ZTI0 123 aa2.5□□□□□ -2.01
USP53-205ENST00000509769 LYNX1G3V0Z9 82 aa2.49□□□□□ -2.01
USP53-205ENST00000509769 LYNX1P0DP58 116 aa2.49□□□□□ -2.01
USP53-205ENST00000509769 LINC00313P59037 77 aa2.49□□□□□ -2.01
USP53-205ENST00000509769 EML6Q6ZMW3 1958 aa2.49□□□□□ -2.01
USP53-205ENST00000509769 IGLV4-60A0A075B6I1 120 aa2.49□□□□□ -2.01
USP53-205ENST00000509769 RUSC1-AS1Q66K80 236 aa2.49□□□□□ -2.01
USP53-205ENST00000509769 PIKFYVEQ9Y2I7 2098 aa2.49□□□□□ -2.01
USP53-205ENST00000509769 IGHV4-30-4P0DP06 118 aa2.49□□□□□ -2.01
USP53-205ENST00000509769 MSMPQ1L6U9 139 aa2.49□□□□□ -2.01
USP53-205ENST00000509769 KCNQ1DNQ9H478 68 aa2.49□□□□□ -2.01
USP53-205ENST00000509769 PTPRDP23468 1912 aa2.49□□□□□ -2.01
USP53-205ENST00000509769 IGFL2Q6UWQ7 119 aa2.49□□□□□ -2.01
USP53-205ENST00000509769 PROK2Q9HC23 129 aa2.49□□□□□ -2.01
USP53-205ENST00000509769 INAFM1C9JVW0 142 aa2.48□□□□□ -2.01
USP53-205ENST00000509769 RNF223E7ERA6 249 aa2.48□□□□□ -2.01
USP53-205ENST00000509769 C11orf45Q8TAV5 145 aa2.48□□□□□ -2.01
USP53-205ENST00000509769 SPINK6Q6UWN8 80 aa2.48□□□□□ -2.01
USP53-205ENST00000509769 ASH1LQ9NR48 2969 aaKnown RBP2.48□□□□□ -2.01
USP53-205ENST00000509769 OBSCN-AS1Q96MR7 158 aa2.48□□□□□ -2.01
USP53-205ENST00000509769 PLXNA2O75051 1894 aa2.48□□□□□ -2.01
USP53-205ENST00000509769 MYO9AB2RTY4 2548 aa2.48□□□□□ -2.01
USP53-205ENST00000509769 TANC2Q9HCD6 1990 aa2.48□□□□□ -2.01
USP53-205ENST00000509769 CHD6Q8TD26 2715 aa2.48□□□□□ -2.01
USP53-205ENST00000509769 IGKV2-28A0A075B6P5 120 aa2.48□□□□□ -2.01
USP53-205ENST00000509769 IGKV2D-28P01615 120 aa2.48□□□□□ -2.01
USP53-205ENST00000509769 BRWD1-AS2P59051 145 aa2.48□□□□□ -2.01
USP53-205ENST00000509769 C1orf134Q5TEV5 83 aa2.48□□□□□ -2.01
USP53-205ENST00000509769 SMCR5Q8TEV8 140 aa2.48□□□□□ -2.01
USP53-205ENST00000509769 EML5Q05BV3 1969 aa2.48□□□□□ -2.01
USP53-205ENST00000509769 CREBBPQ92793 2442 aa2.47□□□□□ -2.01
USP53-205ENST00000509769 H3BNG1 76 aa2.47□□□□□ -2.01
USP53-205ENST00000509769 SLURP1P55000 103 aa2.47□□□□□ -2.01
USP53-205ENST00000509769 ATG2BQ96BY7 2078 aa2.47□□□□□ -2.01
USP53-205ENST00000509769 MAST4O15021 2626 aa2.47□□□□□ -2.01
USP53-205ENST00000509769 CEP192Q8TEP8 1941 aa2.47□□□□□ -2.01
USP53-205ENST00000509769 U3KQA8 63 aa2.47□□□□□ -2.01
USP53-205ENST00000509769 KNTC1P50748 2209 aa2.47□□□□□ -2.01
USP53-205ENST00000509769 C16orf90A8MZG2 172 aa2.47□□□□□ -2.01
USP53-205ENST00000509769 NOTCH2NLQ7Z3S9 236 aa2.47□□□□□ -2.01
USP53-205ENST00000509769 PCNX2A6NKB5 2137 aa2.47□□□□□ -2.01
USP53-205ENST00000509769 FLNBO75369 2602 aaKnown RBP2.47□□□□□ -2.01
USP53-205ENST00000509769 HELZ2Q9BYK8 2649 aaKnown RBP2.47□□□□□ -2.01
USP53-205ENST00000509769 Q6ZRX8 168 aa2.47□□□□□ -2.01
USP53-205ENST00000509769 C8orf17Q9NRJ1 99 aa2.47□□□□□ -2.01
USP53-205ENST00000509769 IGKV2-24A0A0C4DH68 120 aa2.46□□□□□ -2.02
USP53-205ENST00000509769 NUPR2A6NF83 97 aa2.46□□□□□ -2.02
USP53-205ENST00000509769 SPINK1P00995 79 aa2.46□□□□□ -2.02
USP53-205ENST00000509769 Q6YL49 198 aa2.46□□□□□ -2.02
USP53-205ENST00000509769 C11orf21Q9P2W6 132 aa2.46□□□□□ -2.02
USP53-205ENST00000509769 ASCC3Q8N3C0 2202 aaKnown RBP2.46□□□□□ -2.02
USP53-205ENST00000509769 IGLV9-49A0A0B4J1Y8 123 aa2.46□□□□□ -2.02
USP53-205ENST00000509769 GCN1Q92616 2671 aaKnown RBP2.46□□□□□ -2.02
USP53-205ENST00000509769 NAV2Q8IVL1 2488 aa2.46□□□□□ -2.02
USP53-205ENST00000509769 IGLV6-57P01721 117 aa2.46□□□□□ -2.02
USP53-205ENST00000509769 PHF3Q92576 2039 aaKnown RBP2.46□□□□□ -2.02
USP53-205ENST00000509769 MPDZO75970 2070 aa2.46□□□□□ -2.02
USP53-205ENST00000509769 PCNX1Q96RV3 2341 aa2.46□□□□□ -2.02
USP53-205ENST00000509769 UNQ6190/PRO20217Q6UXQ8 127 aa2.45□□□□□ -2.02
USP53-205ENST00000509769 TLX1NBP0CAT3 122 aa2.45□□□□□ -2.02
USP53-205ENST00000509769 PLA2G2DQ9UNK4 145 aa2.45□□□□□ -2.02
USP53-205ENST00000509769 HELZP42694 1942 aaKnown RBP2.45□□□□□ -2.02
USP53-205ENST00000509769 ZNF503-AS2A6NEH8 195 aa2.45□□□□□ -2.02
USP53-205ENST00000509769 IGLV1-40P01703 118 aa2.45□□□□□ -2.02
USP53-205ENST00000509769 COX6A2Q02221 97 aa2.45□□□□□ -2.02
USP53-205ENST00000509769 MYO7AQ13402 2215 aa2.45□□□□□ -2.02
USP53-205ENST00000509769 UNC79Q9P2D8 2635 aa2.45□□□□□ -2.02
USP53-205ENST00000509769 LINC00476Q8WZB0 136 aa2.45□□□□□ -2.02
USP53-205ENST00000509769 SPTA1P02549 2419 aa2.45□□□□□ -2.02
USP53-205ENST00000509769 DOPEY1Q5JWR5 2465 aa2.44□□□□□ -2.02
USP53-205ENST00000509769 IGKV2D-30A0A075B6S6 120 aa2.44□□□□□ -2.02
USP53-205ENST00000509769 IGKV2-30P06310 120 aa2.44□□□□□ -2.02
USP53-205ENST00000509769 OCR1Q9BZK8 76 aa2.44□□□□□ -2.02
USP53-205ENST00000509769 ANKRD17O75179 2603 aaKnown RBP2.44□□□□□ -2.02
USP53-205ENST00000509769 IGLV5-37A0A075B6J1 123 aa2.44□□□□□ -2.02
USP53-205ENST00000509769 PLA2G1BP04054 148 aaKnown RBP2.44□□□□□ -2.02
USP53-205ENST00000509769 Q8N9P0 234 aaPredicted RBP2.44□□□□□ -2.02
USP53-205ENST00000509769 FAM218AQ96MZ4 157 aa2.44□□□□□ -2.02
USP53-205ENST00000509769 LITAFQ99732 161 aa2.44□□□□□ -2.02
USP53-205ENST00000509769 HEATR1Q9H583 2144 aaKnown RBP2.44□□□□□ -2.02
USP53-205ENST00000509769 CACNA1DQ01668 2161 aa2.44□□□□□ -2.02
USP53-205ENST00000509769 CABIN1Q9Y6J0 2220 aa2.44□□□□□ -2.02
USP53-205ENST00000509769 A0A1W2PNU3 283 aaPredicted RBP2.44□□□□□ -2.02
USP53-205ENST00000509769 DEFB116Q30KQ4 102 aa2.44□□□□□ -2.02
USP53-205ENST00000509769 A0A096LNI7 61 aa2.43□□□□□ -2.02
USP53-205ENST00000509769 DENND4CQ5VZ89 1909 aa2.43□□□□□ -2.02
USP53-205ENST00000509769 ZNF292O60281 2723 aa2.43□□□□□ -2.02
USP53-205ENST00000509769 IGLV8-61A0A075B6I0 122 aa2.43□□□□□ -2.02
USP53-205ENST00000509769 A0A1B0GVX0 72 aa2.43□□□□□ -2.02
USP53-205ENST00000509769 DEFB135Q30KP9 77 aa2.43□□□□□ -2.02
USP53-205ENST00000509769 PRR9Q5T870 116 aa2.43□□□□□ -2.02
USP53-205ENST00000509769 CRIP3Q6Q6R5 217 aa2.43□□□□□ -2.02
USP53-205ENST00000509769 C1orf229Q6ZS94 237 aaPredicted RBP2.43□□□□□ -2.02
USP53-205ENST00000509769 C15orf56Q8N910 161 aa2.43□□□□□ -2.02
USP53-205ENST00000509769 USP9XQ93008 2570 aaPredicted RBP2.43□□□□□ -2.02
USP53-205ENST00000509769 NOTCH4Q99466 2003 aa2.43□□□□□ -2.02
USP53-205ENST00000509769 FHL3Q13643 280 aa2.43□□□□□ -2.02
USP53-205ENST00000509769 WWC2-AS2Q96NR7 200 aa2.43□□□□□ -2.02
USP53-205ENST00000509769 DOPEY2Q9Y3R5 2298 aa2.43□□□□□ -2.02
USP53-205ENST00000509769 ACACAQ13085 2346 aa2.43□□□□□ -2.02
Retrieved 100 of 20,778 RNA–protein pairs in 190 ms