RNA–Protein interactions for RNA: ENST00000509638.5

LIMCH1-211, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 1,570 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-211ENST00000509638 C6orf226Q5I0X4 101 aa19.12■□□□□ 0.65
LIMCH1-211ENST00000509638 C2orf82Q6UX34 121 aa19.12■□□□□ 0.65
LIMCH1-211ENST00000509638 F8WDY8 70 aa19.11■□□□□ 0.65
LIMCH1-211ENST00000509638 CKS1BP61024 79 aa19.1■□□□□ 0.65
LIMCH1-211ENST00000509638 C10orf25Q5T742 122 aa19.1■□□□□ 0.65
LIMCH1-211ENST00000509638 UNQ6190/PRO20217Q6UXQ8 127 aa19.1■□□□□ 0.65
LIMCH1-211ENST00000509638 C20orf202A1L168 122 aa19.08■□□□□ 0.65
LIMCH1-211ENST00000509638 CXCL5P42830 114 aa19.06■□□□□ 0.64
LIMCH1-211ENST00000509638 C6orf48Q9UBA6 75 aa19.06■□□□□ 0.64
LIMCH1-211ENST00000509638 BIRC6Q9NR09 4857 aa19.04■□□□□ 0.64
LIMCH1-211ENST00000509638 SDIM1Q6ZPB5 146 aa19.04■□□□□ 0.64
LIMCH1-211ENST00000509638 HERVK_113P61574 105 aa19.02■□□□□ 0.64
LIMCH1-211ENST00000509638 TRBV30A0A0K0K1B3 111 aa19.02■□□□□ 0.63
LIMCH1-211ENST00000509638 RNF151Q2KHN1 245 aa19.02■□□□□ 0.63
LIMCH1-211ENST00000509638 FAM30AQ9NZY2 134 aa18.99■□□□□ 0.63
LIMCH1-211ENST00000509638 Q6ZSA8 131 aa18.98■□□□□ 0.63
LIMCH1-211ENST00000509638 PKIGQ9Y2B9 76 aa18.98■□□□□ 0.63
LIMCH1-211ENST00000509638 C9orf116Q5BN46 136 aaPredicted RBP18.98■□□□□ 0.63
LIMCH1-211ENST00000509638 APOBP04114 4563 aaKnown RBP18.97■□□□□ 0.63
LIMCH1-211ENST00000509638 DNAH8Q96JB1 4490 aa18.97■□□□□ 0.63
LIMCH1-211ENST00000509638 LOC107984640A0A0U1RRK4 108 aa18.97■□□□□ 0.63
LIMCH1-211ENST00000509638 ATOH7Q8N100 152 aa18.97■□□□□ 0.63
LIMCH1-211ENST00000509638 CHTF8P0CG12 524 aa18.96■□□□□ 0.63
LIMCH1-211ENST00000509638 RPL18AQ02543 176 aaKnown RBP18.96■□□□□ 0.63
LIMCH1-211ENST00000509638 A0A096LNI7 61 aa18.95■□□□□ 0.62
LIMCH1-211ENST00000509638 TSPEAR-AS2P59090 65 aa18.95■□□□□ 0.62
LIMCH1-211ENST00000509638 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP18.95■□□□□ 0.62
LIMCH1-211ENST00000509638 IGKV2-24A0A0C4DH68 120 aa18.94■□□□□ 0.62
LIMCH1-211ENST00000509638 LEPROTO15243 131 aa18.94■□□□□ 0.62
LIMCH1-211ENST00000509638 STPG4Q8N801 248 aa18.94■□□□□ 0.62
LIMCH1-211ENST00000509638 PANO1I0J062 215 aa18.93■□□□□ 0.62
LIMCH1-211ENST00000509638 AKR1D1P51857 326 aa18.93■□□□□ 0.62
LIMCH1-211ENST00000509638 PLEKHB2Q96CS7 222 aa18.93■□□□□ 0.62
LIMCH1-211ENST00000509638 ZNF625Q96I27 306 aaPredicted RBP18.93■□□□□ 0.62
LIMCH1-211ENST00000509638 E9PLD3 99 aa18.92■□□□□ 0.62
LIMCH1-211ENST00000509638 SFTA2Q6UW10 78 aa18.92■□□□□ 0.62
LIMCH1-211ENST00000509638 TLX1NBP0CAT3 122 aa18.91■□□□□ 0.62
LIMCH1-211ENST00000509638 HAMPP81172 84 aa18.91■□□□□ 0.62
LIMCH1-211ENST00000509638 J3QQQ9 107 aa18.9■□□□□ 0.62
LIMCH1-211ENST00000509638 PTTG1IPP53801 180 aa18.9■□□□□ 0.62
LIMCH1-211ENST00000509638 GAGE2BQ13066 116 aa18.9■□□□□ 0.62
LIMCH1-211ENST00000509638 NDUFC2-KCTD14E9PQ53 114 aa18.89■□□□□ 0.62
LIMCH1-211ENST00000509638 Q6ZRP5 223 aa18.89■□□□□ 0.62
LIMCH1-211ENST00000509638 SPACA4Q8TDM5 124 aa18.89■□□□□ 0.62
LIMCH1-211ENST00000509638 KIAA1109Q2LD37 5005 aa18.89■□□□□ 0.61
LIMCH1-211ENST00000509638 CDK2AP2O75956 126 aa18.89■□□□□ 0.61
LIMCH1-211ENST00000509638 NDUFA12Q9UI09 145 aa18.89■□□□□ 0.61
LIMCH1-211ENST00000509638 CIRBPQ14011 172 aaKnown RBP18.88■□□□□ 0.61
LIMCH1-211ENST00000509638 SCGB1D1O95968 90 aa18.87■□□□□ 0.61
LIMCH1-211ENST00000509638 LGALS3P17931 250 aaKnown RBP18.87■□□□□ 0.61
LIMCH1-211ENST00000509638 MAJINQ3KP22 176 aa18.85■□□□□ 0.61
LIMCH1-211ENST00000509638 GAGE2EQ4V326 116 aa18.85■□□□□ 0.61
LIMCH1-211ENST00000509638 SCXQ7RTU7 201 aa18.85■□□□□ 0.61
LIMCH1-211ENST00000509638 LINC00474Q9P2X8 69 aa18.85■□□□□ 0.61
LIMCH1-211ENST00000509638 GAGE2DQ9UEU5 116 aa18.85■□□□□ 0.61
LIMCH1-211ENST00000509638 XGP55808 180 aa18.85■□□□□ 0.61
LIMCH1-211ENST00000509638 ERG28Q9UKR5 140 aa18.84■□□□□ 0.61
LIMCH1-211ENST00000509638 RYR1P21817 5038 aa18.83■□□□□ 0.61
LIMCH1-211ENST00000509638 IGKV2D-26A0A0A0MRZ7 120 aa18.83■□□□□ 0.6
LIMCH1-211ENST00000509638 MYMXA0A1B0GTQ4 84 aa18.83■□□□□ 0.6
LIMCH1-211ENST00000509638 PFN2P35080 140 aa18.82■□□□□ 0.6
LIMCH1-211ENST00000509638 ANKRD39Q53RE8 183 aa18.82■□□□□ 0.6
LIMCH1-211ENST00000509638 NMUP48645 174 aa18.81■□□□□ 0.6
LIMCH1-211ENST00000509638 HERV-K104P63124 156 aa18.81■□□□□ 0.6
LIMCH1-211ENST00000509638 CIRBP-AS1Q8TBR5 109 aa18.81■□□□□ 0.6
LIMCH1-211ENST00000509638 DPH3Q96FX2 82 aa18.81■□□□□ 0.6
LIMCH1-211ENST00000509638 HSPG2P98160 4391 aa18.81■□□□□ 0.6
LIMCH1-211ENST00000509638 A0A087WYN8 130 aa18.78■□□□□ 0.6
LIMCH1-211ENST00000509638 COX17Q14061 63 aa18.77■□□□□ 0.6
LIMCH1-211ENST00000509638 MEIG1Q5JSS6 88 aa18.77■□□□□ 0.6
LIMCH1-211ENST00000509638 XAGE1AQ9HD64 81 aa18.76■□□□□ 0.59
LIMCH1-211ENST00000509638 HSBP1L1C9JCN9 74 aa18.76■□□□□ 0.59
LIMCH1-211ENST00000509638 JOSD1Q15040 202 aaPredicted RBP18.75■□□□□ 0.59
LIMCH1-211ENST00000509638 C9orf129Q5T035 196 aaKnown RBP18.75■□□□□ 0.59
LIMCH1-211ENST00000509638 TTTY13Q9BZ97 58 aa18.75■□□□□ 0.59
LIMCH1-211ENST00000509638 A0A0U1RRA0 63 aa18.73■□□□□ 0.59
LIMCH1-211ENST00000509638 SMIM13P0DJ93 91 aa18.73■□□□□ 0.59
LIMCH1-211ENST00000509638 PLAC8Q9NZF1 115 aa18.73■□□□□ 0.59
LIMCH1-211ENST00000509638 ZNF815PA8K554 130 aa18.72■□□□□ 0.59
LIMCH1-211ENST00000509638 LINC00158P58513 81 aa18.72■□□□□ 0.59
LIMCH1-211ENST00000509638 FAM168BA1KXE4 195 aa18.71■□□□□ 0.59
LIMCH1-211ENST00000509638 A0A1W2PNN7 141 aa18.69■□□□□ 0.58
LIMCH1-211ENST00000509638 A0A0J9YXY3 114 aa18.68■□□□□ 0.58
LIMCH1-211ENST00000509638 LINC00587B1AMM8 73 aa18.68■□□□□ 0.58
LIMCH1-211ENST00000509638 SND1-IT1Q9HBX3 110 aa18.68■□□□□ 0.58
LIMCH1-211ENST00000509638 FAM19A5Q7Z5A7 132 aaPredicted RBP18.68■□□□□ 0.58
LIMCH1-211ENST00000509638 PYY3Q5JQD4 70 aa18.67■□□□□ 0.58
LIMCH1-211ENST00000509638 PCP2Q8IVA1 136 aa18.67■□□□□ 0.58
LIMCH1-211ENST00000509638 SMR3BP02814 79 aaPredicted RBP18.65■□□□□ 0.58
LIMCH1-211ENST00000509638 MIR7-3HGQ8N6C7 128 aa18.64■□□□□ 0.58
LIMCH1-211ENST00000509638 EPM2AB3EWF7 344 aa18.63■□□□□ 0.57
LIMCH1-211ENST00000509638 DAND5Q8N907 189 aa18.63■□□□□ 0.57
LIMCH1-211ENST00000509638 SERTAD4-AS1Q5TG53 156 aa18.62■□□□□ 0.57
LIMCH1-211ENST00000509638 KRTAP7-1Q8IUC3 87 aa18.62■□□□□ 0.57
LIMCH1-211ENST00000509638 VAMP8Q9BV40 100 aa18.61■□□□□ 0.57
LIMCH1-211ENST00000509638 PAM16Q9Y3D7 125 aa18.61■□□□□ 0.57
LIMCH1-211ENST00000509638 SCGB1D4Q6XE38 83 aa18.59■□□□□ 0.57
LIMCH1-211ENST00000509638 HERC2O95714 4834 aa18.59■□□□□ 0.57
LIMCH1-211ENST00000509638 LINC00528Q8N1L1 170 aa18.59■□□□□ 0.57
LIMCH1-211ENST00000509638 FAT1Q14517 4588 aa18.58■□□□□ 0.57
Retrieved 100 of 20,778 RNA–protein pairs in 45.9 ms