RNA–Protein interactions for RNA: ENST00000498213.1

USP54-217, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 4

Gene USP54, Length 815 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-217ENST00000498213 PPP1R17O96001 155 aa2.38□□□□□ -2.03
USP54-217ENST00000498213 TRGC2P03986 189 aa2.38□□□□□ -2.03
USP54-217ENST00000498213 RPL13AP40429 203 aaKnown RBP2.38□□□□□ -2.03
USP54-217ENST00000498213 COTL1Q14019 142 aa2.38□□□□□ -2.03
USP54-217ENST00000498213 ZNF56Q15929 161 aa2.38□□□□□ -2.03
USP54-217ENST00000498213 MRPL54Q6P161 138 aaKnown RBP2.38□□□□□ -2.03
USP54-217ENST00000498213 RASL11AQ6T310 242 aa2.38□□□□□ -2.03
USP54-217ENST00000498213 TMEM136Q6ZRR5 245 aa2.38□□□□□ -2.03
USP54-217ENST00000498213 LINC00269Q8N2A0 174 aa2.38□□□□□ -2.03
USP54-217ENST00000498213 NUP35Q8NFH5 326 aa2.38□□□□□ -2.03
USP54-217ENST00000498213 OR2D3Q8NGH3 330 aa2.38□□□□□ -2.03
USP54-217ENST00000498213 IMMP2LQ96T52 175 aa2.38□□□□□ -2.03
USP54-217ENST00000498213 CNFNQ9BYD5 112 aa2.38□□□□□ -2.03
USP54-217ENST00000498213 NIT2Q9NQR4 276 aa2.38□□□□□ -2.03
USP54-217ENST00000498213 CSDC2Q9Y534 153 aaKnown RBP2.38□□□□□ -2.03
USP54-217ENST00000498213 MUC17Q685J3 4493 aa2.38□□□□□ -2.03
USP54-217ENST00000498213 IGHV1-58A0A0C4DH39 117 aa2.37□□□□□ -2.03
USP54-217ENST00000498213 MUC21A0A0G2JKD1 596 aa2.37□□□□□ -2.03
USP54-217ENST00000498213 MUC21A0A140T8X8 626 aa2.37□□□□□ -2.03
USP54-217ENST00000498213 HIGD1CA8MV81 97 aa2.37□□□□□ -2.03
USP54-217ENST00000498213 H0Y9J4 135 aa2.37□□□□□ -2.03
USP54-217ENST00000498213 HIST1H2BKO60814 126 aa2.37□□□□□ -2.03
USP54-217ENST00000498213 HIST1H2BJP06899 126 aa2.37□□□□□ -2.03
USP54-217ENST00000498213 IGLC6P0CF74 106 aa2.37□□□□□ -2.03
USP54-217ENST00000498213 FGF6P10767 208 aa2.37□□□□□ -2.03
USP54-217ENST00000498213 HIST1H2BOP23527 126 aa2.37□□□□□ -2.03
USP54-217ENST00000498213 HIST1H2BBP33778 126 aa2.37□□□□□ -2.03
USP54-217ENST00000498213 FOXA3P55318 350 aaPredicted RBP2.37□□□□□ -2.03
USP54-217ENST00000498213 HIST1H2BDP58876 126 aa2.37□□□□□ -2.03
USP54-217ENST00000498213 HIST1H2BCP62807 126 aa2.37□□□□□ -2.03
USP54-217ENST00000498213 HIST2H2BEQ16778 126 aa2.37□□□□□ -2.03
USP54-217ENST00000498213 KRTAP20-1Q3LI63 56 aa2.37□□□□□ -2.03
USP54-217ENST00000498213 HIST2H2BFQ5QNW6 126 aaPredicted RBP2.37□□□□□ -2.03
USP54-217ENST00000498213 LINC00242Q5T6M2 205 aa2.37□□□□□ -2.03
USP54-217ENST00000498213 Q6ZVH6 145 aa2.37□□□□□ -2.03
USP54-217ENST00000498213 C20orf203Q8NBC4 194 aa2.37□□□□□ -2.03
USP54-217ENST00000498213 HIST1H2BHQ93079 126 aa2.37□□□□□ -2.03
USP54-217ENST00000498213 DIRC1Q969H9 104 aa2.37□□□□□ -2.03
USP54-217ENST00000498213 HIST1H2BNQ99877 126 aa2.37□□□□□ -2.03
USP54-217ENST00000498213 HIST1H2BMQ99879 126 aa2.37□□□□□ -2.03
USP54-217ENST00000498213 TRAV9-1A0A075B6T8 112 aa2.36□□□□□ -2.03
USP54-217ENST00000498213 TRAV26-2A0A0B4J265 109 aa2.36□□□□□ -2.03
USP54-217ENST00000498213 A8MWL6 223 aa2.36□□□□□ -2.03
USP54-217ENST00000498213 NUPR1O60356 82 aa2.36□□□□□ -2.03
USP54-217ENST00000498213 ESDP10768 282 aa2.36□□□□□ -2.03
USP54-217ENST00000498213 S100PP25815 95 aa2.36□□□□□ -2.03
USP54-217ENST00000498213 CTRLP40313 264 aa2.36□□□□□ -2.03
USP54-217ENST00000498213 SSTP61278 116 aa2.36□□□□□ -2.03
USP54-217ENST00000498213 FABP9Q0Z7S8 132 aa2.36□□□□□ -2.03
USP54-217ENST00000498213 CD164L2Q6UWJ8 174 aa2.36□□□□□ -2.03
USP54-217ENST00000498213 LYZL1Q6UWQ5 148 aa2.36□□□□□ -2.03
USP54-217ENST00000498213 NTM-AS1Q6ZSK4 140 aa2.36□□□□□ -2.03
USP54-217ENST00000498213 SMIM15Q7Z3B0 74 aa2.36□□□□□ -2.03
USP54-217ENST00000498213 MRPL52Q86TS9 123 aaKnown RBP2.36□□□□□ -2.03
USP54-217ENST00000498213 FER1L6-AS1Q8NA97 138 aa2.36□□□□□ -2.03
USP54-217ENST00000498213 GATD1Q8NB37 220 aa2.36□□□□□ -2.03
USP54-217ENST00000498213 OR5A1Q8NGJ0 315 aa2.36□□□□□ -2.03
USP54-217ENST00000498213 OR10AG1Q8NH19 301 aa2.36□□□□□ -2.03
USP54-217ENST00000498213 TMEM101Q96IK0 257 aa2.36□□□□□ -2.03
USP54-217ENST00000498213 BTF3L4Q96K17 158 aa2.36□□□□□ -2.03
USP54-217ENST00000498213 TPPP3Q9BW30 176 aa2.36□□□□□ -2.03
USP54-217ENST00000498213 DHRS4-AS1Q9P1J3 65 aa2.36□□□□□ -2.03
USP54-217ENST00000498213 NAT8BQ9UHF3 227 aa2.36□□□□□ -2.03
USP54-217ENST00000498213 MACF1Q9UPN3 7388 aaKnown RBP2.35□□□□□ -2.03
USP54-217ENST00000498213 TRBV6-5A0A0K0K1A5 114 aa2.35□□□□□ -2.03
USP54-217ENST00000498213 LOC107984640A0A0U1RRK4 108 aa2.35□□□□□ -2.03
USP54-217ENST00000498213 C1orf196B1AJZ1 125 aa2.35□□□□□ -2.03
USP54-217ENST00000498213 APOMO95445 188 aa2.35□□□□□ -2.03
USP54-217ENST00000498213 NDUFA6P56556 154 aa2.35□□□□□ -2.03
USP54-217ENST00000498213 HBBP68871 147 aa2.35□□□□□ -2.03
USP54-217ENST00000498213 COX6A2Q02221 97 aa2.35□□□□□ -2.03
USP54-217ENST00000498213 SS18Q15532 418 aa2.35□□□□□ -2.03
USP54-217ENST00000498213 MAJINQ3KP22 176 aa2.35□□□□□ -2.03
USP54-217ENST00000498213 AMMECR1LQ6DCA0 310 aa2.35□□□□□ -2.03
USP54-217ENST00000498213 CARD19Q96LW7 228 aa2.35□□□□□ -2.03
USP54-217ENST00000498213 GNB1LQ9BYB4 327 aa2.35□□□□□ -2.03
USP54-217ENST00000498213 TRAPPC1Q9Y5R8 145 aa2.35□□□□□ -2.03
USP54-217ENST00000498213 IGLV4-69A0A075B6H9 119 aa2.34□□□□□ -2.03
USP54-217ENST00000498213 A0A1B0GUT8 65 aa2.34□□□□□ -2.03
USP54-217ENST00000498213 SMKR1H3BMG3 65 aa2.34□□□□□ -2.03
USP54-217ENST00000498213 KRTAP5-8O75690 187 aa2.34□□□□□ -2.03
USP54-217ENST00000498213 APCSP02743 223 aa2.34□□□□□ -2.03
USP54-217ENST00000498213 TLX1NBP0CAT3 122 aa2.34□□□□□ -2.03
USP54-217ENST00000498213 NTF3P20783 257 aa2.34□□□□□ -2.03
USP54-217ENST00000498213 RAB5BP61020 215 aa2.34□□□□□ -2.03
USP54-217ENST00000498213 SYCNQ0VAF6 134 aa2.34□□□□□ -2.03
USP54-217ENST00000498213 PDZD11Q5EBL8 140 aa2.34□□□□□ -2.03
USP54-217ENST00000498213 COA6Q5JTJ3 125 aaKnown RBP2.34□□□□□ -2.03
USP54-217ENST00000498213 ATP5L2Q7Z4Y8 100 aa2.34□□□□□ -2.03
USP54-217ENST00000498213 AMN1Q8IY45 258 aa2.34□□□□□ -2.03
USP54-217ENST00000498213 HIST3H2BBQ8N257 126 aa2.34□□□□□ -2.03
USP54-217ENST00000498213 LINC00469Q8N7U9 141 aa2.34□□□□□ -2.03
USP54-217ENST00000498213 C15orf56Q8N910 161 aa2.34□□□□□ -2.03
USP54-217ENST00000498213 OR10D4PQ8NGN7 298 aa2.34□□□□□ -2.03
USP54-217ENST00000498213 CHCHD10Q8WYQ3 142 aaPredicted RBP2.34□□□□□ -2.03
USP54-217ENST00000498213 LINC00526Q96FQ7 95 aa2.34□□□□□ -2.03
USP54-217ENST00000498213 TIMM21Q9BVV7 248 aa2.34□□□□□ -2.03
USP54-217ENST00000498213 Q9UF83 564 aa2.34□□□□□ -2.03
USP54-217ENST00000498213 CBY1Q9Y3M2 126 aa2.34□□□□□ -2.03
USP54-217ENST00000498213 TRBV27A0A0K0K1C4 114 aa2.33□□□□□ -2.04
Retrieved 100 of 20,778 RNA–protein pairs in 69.6 ms