RNA–Protein interactions for RNA: ENST00000495497.1

HDAC4-212, Transcript of histone deacetylase 4, humanhuman

TSL 5

Gene HDAC4, Length 849 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4-212ENST00000495497 C6orf226Q5I0X4 101 aa12.38□□□□□ -0.43
HDAC4-212ENST00000495497 Q8IZM0 81 aa12.38□□□□□ -0.43
HDAC4-212ENST00000495497 Q8N1X5 172 aa12.38□□□□□ -0.43
HDAC4-212ENST00000495497 DPH3Q96FX2 82 aa12.38□□□□□ -0.43
HDAC4-212ENST00000495497 KRTAP4-5Q9BYR2 181 aa12.38□□□□□ -0.43
HDAC4-212ENST00000495497 MRPL35Q9NZE8 188 aaKnown RBP12.38□□□□□ -0.43
HDAC4-212ENST00000495497 C6orf48Q9UBA6 75 aa12.38□□□□□ -0.43
HDAC4-212ENST00000495497 VPS13BQ7Z7G8 4022 aa12.37□□□□□ -0.43
HDAC4-212ENST00000495497 CIRBPQ14011 172 aaKnown RBP12.37□□□□□ -0.43
HDAC4-212ENST00000495497 SPACA4Q8TDM5 124 aa12.37□□□□□ -0.43
HDAC4-212ENST00000495497 LOC107984640A0A0U1RRK4 108 aa12.36□□□□□ -0.43
HDAC4-212ENST00000495497 H3BRM9 83 aa12.36□□□□□ -0.43
HDAC4-212ENST00000495497 GAGE2BQ13066 116 aa12.36□□□□□ -0.43
HDAC4-212ENST00000495497 RNF151Q2KHN1 245 aa12.36□□□□□ -0.43
HDAC4-212ENST00000495497 MAJINQ3KP22 176 aa12.36□□□□□ -0.43
HDAC4-212ENST00000495497 TMEM170BQ5T4T1 132 aa12.35□□□□□ -0.43
HDAC4-212ENST00000495497 COX7B2Q8TF08 81 aa12.35□□□□□ -0.43
HDAC4-212ENST00000495497 HSPB8Q9UJY1 196 aa12.35□□□□□ -0.43
HDAC4-212ENST00000495497 A0A087WYN8 130 aa12.34□□□□□ -0.43
HDAC4-212ENST00000495497 CKS1BP61024 79 aa12.34□□□□□ -0.43
HDAC4-212ENST00000495497 RPL18AQ02543 176 aaKnown RBP12.34□□□□□ -0.43
HDAC4-212ENST00000495497 C9orf116Q5BN46 136 aaPredicted RBP12.34□□□□□ -0.43
HDAC4-212ENST00000495497 ABCA13Q86UQ4 5058 aa12.34□□□□□ -0.43
HDAC4-212ENST00000495497 F8VRH5 84 aa12.33□□□□□ -0.44
HDAC4-212ENST00000495497 PTTG1IPP53801 180 aa12.33□□□□□ -0.44
HDAC4-212ENST00000495497 ODF1Q14990 250 aa12.33□□□□□ -0.44
HDAC4-212ENST00000495497 PKIGQ9Y2B9 76 aa12.32□□□□□ -0.44
HDAC4-212ENST00000495497 IGLV5-39A0A0G2JS06 123 aa12.31□□□□□ -0.44
HDAC4-212ENST00000495497 TRBV30A0A0K0K1B3 111 aa12.31□□□□□ -0.44
HDAC4-212ENST00000495497 COA6Q5JTJ3 125 aaKnown RBP12.31□□□□□ -0.44
HDAC4-212ENST00000495497 Q5VSD8 79 aa12.31□□□□□ -0.44
HDAC4-212ENST00000495497 LINC00528Q8N1L1 170 aa12.31□□□□□ -0.44
HDAC4-212ENST00000495497 STPG4Q8N801 248 aa12.31□□□□□ -0.44
HDAC4-212ENST00000495497 Q6ZRP5 223 aa12.3□□□□□ -0.44
HDAC4-212ENST00000495497 PMCHL2Q9BQD1 86 aa12.3□□□□□ -0.44
HDAC4-212ENST00000495497 EPM2AB3EWF7 344 aa12.29□□□□□ -0.44
HDAC4-212ENST00000495497 TMEM223A0PJW6 202 aa12.28□□□□□ -0.44
HDAC4-212ENST00000495497 TLX1NBP0CAT3 122 aa12.28□□□□□ -0.44
HDAC4-212ENST00000495497 GAGE2EQ4V326 116 aa12.28□□□□□ -0.44
HDAC4-212ENST00000495497 MAP1LC3CQ9BXW4 147 aa12.28□□□□□ -0.44
HDAC4-212ENST00000495497 PLAC8Q9NZF1 115 aa12.28□□□□□ -0.44
HDAC4-212ENST00000495497 LINC00474Q9P2X8 69 aa12.28□□□□□ -0.44
HDAC4-212ENST00000495497 GAGE2DQ9UEU5 116 aa12.28□□□□□ -0.44
HDAC4-212ENST00000495497 FAM229AH3BQW9 127 aa12.27□□□□□ -0.45
HDAC4-212ENST00000495497 CXCL5P42830 114 aa12.27□□□□□ -0.45
HDAC4-212ENST00000495497 A0A1W2PNN7 141 aa12.25□□□□□ -0.45
HDAC4-212ENST00000495497 NDUFC2-KCTD14E9PQ53 114 aa12.24□□□□□ -0.45
HDAC4-212ENST00000495497 SYS1-DBNDD2H3BUS1 97 aa12.23□□□□□ -0.45
HDAC4-212ENST00000495497 DPM2O94777 84 aa12.23□□□□□ -0.45
HDAC4-212ENST00000495497 FAM168BA1KXE4 195 aa12.22□□□□□ -0.45
HDAC4-212ENST00000495497 IGKCP01834 107 aa12.22□□□□□ -0.45
HDAC4-212ENST00000495497 PLNP26678 52 aa12.22□□□□□ -0.45
HDAC4-212ENST00000495497 C9orf129Q5T035 196 aaKnown RBP12.21□□□□□ -0.45
HDAC4-212ENST00000495497 PCLOQ9Y6V0 5065 aa12.2□□□□□ -0.46
HDAC4-212ENST00000495497 C3orf79P0CE67 100 aa12.2□□□□□ -0.46
HDAC4-212ENST00000495497 ZNF625Q96I27 306 aaPredicted RBP12.2□□□□□ -0.46
HDAC4-212ENST00000495497 PLA2G1BP04054 148 aaKnown RBP12.18□□□□□ -0.46
HDAC4-212ENST00000495497 KRTDAPP60985 99 aa12.18□□□□□ -0.46
HDAC4-212ENST00000495497 PET117Q6UWS5 81 aa12.18□□□□□ -0.46
HDAC4-212ENST00000495497 XAGE1AQ9HD64 81 aa12.18□□□□□ -0.46
HDAC4-212ENST00000495497 PFN2P35080 140 aa12.17□□□□□ -0.46
HDAC4-212ENST00000495497 KRTAP10-4P60372 401 aaPredicted RBP12.17□□□□□ -0.46
HDAC4-212ENST00000495497 RPL37AP61513 92 aaKnown RBP12.17□□□□□ -0.46
HDAC4-212ENST00000495497 LINC01545Q5VT33 79 aa12.17□□□□□ -0.46
HDAC4-212ENST00000495497 FAM19A5Q7Z5A7 132 aaPredicted RBP12.17□□□□□ -0.46
HDAC4-212ENST00000495497 KRTAP7-1Q8IUC3 87 aa12.17□□□□□ -0.46
HDAC4-212ENST00000495497 HIST3H2BBQ8N257 126 aa12.17□□□□□ -0.46
HDAC4-212ENST00000495497 TSPEAR-AS2P59090 65 aa12.16□□□□□ -0.46
HDAC4-212ENST00000495497 PHF5AQ7RTV0 110 aaKnown RBP12.16□□□□□ -0.46
HDAC4-212ENST00000495497 PKHD1L1Q86WI1 4243 aa12.16□□□□□ -0.46
HDAC4-212ENST00000495497 S100A6P06703 90 aa12.15□□□□□ -0.46
HDAC4-212ENST00000495497 C7orf33Q8WU49 177 aa12.15□□□□□ -0.46
HDAC4-212ENST00000495497 ERG28Q9UKR5 140 aa12.15□□□□□ -0.46
HDAC4-212ENST00000495497 LEPROTO15243 131 aa12.14□□□□□ -0.47
HDAC4-212ENST00000495497 INAFM2P0DMQ5 153 aa12.13□□□□□ -0.47
HDAC4-212ENST00000495497 HERVK_113P61574 105 aa12.13□□□□□ -0.47
HDAC4-212ENST00000495497 SNRPEP62304 92 aaKnown RBP12.12□□□□□ -0.47
HDAC4-212ENST00000495497 SERTAD4-AS1Q5TG53 156 aa12.12□□□□□ -0.47
HDAC4-212ENST00000495497 HIST1H2BLQ99880 126 aa12.12□□□□□ -0.47
HDAC4-212ENST00000495497 A0A0U1RRA0 63 aa12.11□□□□□ -0.47
HDAC4-212ENST00000495497 S100A2P29034 98 aa12.11□□□□□ -0.47
HDAC4-212ENST00000495497 PLEKHB2Q96CS7 222 aa12.11□□□□□ -0.47
HDAC4-212ENST00000495497 NDUFA12Q9UI09 145 aa12.11□□□□□ -0.47
HDAC4-212ENST00000495497 SRRM2Q9UQ35 2752 aaKnown RBP12.11□□□□□ -0.47
HDAC4-212ENST00000495497 J3QQQ9 107 aa12.1□□□□□ -0.47
HDAC4-212ENST00000495497 SFTA2Q6UW10 78 aa12.1□□□□□ -0.47
HDAC4-212ENST00000495497 MYMXA0A1B0GTQ4 84 aa12.08□□□□□ -0.48
HDAC4-212ENST00000495497 M0QXV9 152 aa12.08□□□□□ -0.48
HDAC4-212ENST00000495497 SMIM13P0DJ93 91 aa12.08□□□□□ -0.48
HDAC4-212ENST00000495497 HNRNPA3P51991 378 aaKnown RBP12.08□□□□□ -0.48
HDAC4-212ENST00000495497 LINC00158P58513 81 aa12.08□□□□□ -0.48
HDAC4-212ENST00000495497 COX17Q14061 63 aa12.08□□□□□ -0.48
HDAC4-212ENST00000495497 E9PLD3 99 aa12.07□□□□□ -0.48
HDAC4-212ENST00000495497 LGALS3P17931 250 aaKnown RBP12.07□□□□□ -0.48
HDAC4-212ENST00000495497 MEIG1Q5JSS6 88 aa12.07□□□□□ -0.48
HDAC4-212ENST00000495497 KRTAP11-1Q8IUC1 163 aa12.07□□□□□ -0.48
HDAC4-212ENST00000495497 SND1-IT1Q9HBX3 110 aa12.07□□□□□ -0.48
HDAC4-212ENST00000495497 C20orf202A1L168 122 aa12.06□□□□□ -0.48
HDAC4-212ENST00000495497 C5orf52A6NGY3 159 aa12.06□□□□□ -0.48
HDAC4-212ENST00000495497 HERV-K104P63124 156 aa12.06□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 67.1 ms