RNA–Protein interactions for RNA: ENST00000493815.5

PDLIM7-208, Transcript of PDZ and LIM domain 7, humanhuman

TSL 1 (best)

Gene PDLIM7, Length 1,686 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM7-208ENST00000493815 C3orf79P0CE67 100 aa11.46□□□□□ -0.57
PDLIM7-208ENST00000493815 CHTF8P0CG12 524 aa11.46□□□□□ -0.57
PDLIM7-208ENST00000493815 KRTDAPP60985 99 aa11.46□□□□□ -0.57
PDLIM7-208ENST00000493815 CKS1BP61024 79 aa11.46□□□□□ -0.57
PDLIM7-208ENST00000493815 SNRPEP62304 92 aaKnown RBP11.46□□□□□ -0.57
PDLIM7-208ENST00000493815 C6orf48Q9UBA6 75 aa11.46□□□□□ -0.57
PDLIM7-208ENST00000493815 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP11.46□□□□□ -0.57
PDLIM7-208ENST00000493815 DNAH8Q96JB1 4490 aa11.46□□□□□ -0.58
PDLIM7-208ENST00000493815 IGLV5-39A0A0G2JS06 123 aa11.45□□□□□ -0.58
PDLIM7-208ENST00000493815 TMEM223A0PJW6 202 aa11.45□□□□□ -0.58
PDLIM7-208ENST00000493815 XGP55808 180 aa11.45□□□□□ -0.58
PDLIM7-208ENST00000493815 Q6ZSA8 131 aa11.45□□□□□ -0.58
PDLIM7-208ENST00000493815 IGKV2-24A0A0C4DH68 120 aa11.44□□□□□ -0.58
PDLIM7-208ENST00000493815 DPM2O94777 84 aa11.44□□□□□ -0.58
PDLIM7-208ENST00000493815 PLNP26678 52 aa11.44□□□□□ -0.58
PDLIM7-208ENST00000493815 C9orf116Q5BN46 136 aaPredicted RBP11.44□□□□□ -0.58
PDLIM7-208ENST00000493815 HIST1H2BLQ99880 126 aa11.44□□□□□ -0.58
PDLIM7-208ENST00000493815 RYR1P21817 5038 aa11.44□□□□□ -0.58
PDLIM7-208ENST00000493815 F8WDY8 70 aa11.43□□□□□ -0.58
PDLIM7-208ENST00000493815 IGKCP01834 107 aa11.43□□□□□ -0.58
PDLIM7-208ENST00000493815 S100A2P29034 98 aa11.43□□□□□ -0.58
PDLIM7-208ENST00000493815 CDK2AP2O75956 126 aa11.43□□□□□ -0.58
PDLIM7-208ENST00000493815 A0A096LNI7 61 aa11.42□□□□□ -0.58
PDLIM7-208ENST00000493815 PET117Q6UWS5 81 aa11.42□□□□□ -0.58
PDLIM7-208ENST00000493815 HSPG2P98160 4391 aa11.41□□□□□ -0.58
PDLIM7-208ENST00000493815 RPL18AQ02543 176 aaKnown RBP11.41□□□□□ -0.58
PDLIM7-208ENST00000493815 LINC01545Q5VT33 79 aa11.41□□□□□ -0.58
PDLIM7-208ENST00000493815 LOC107984640A0A0U1RRK4 108 aa11.4□□□□□ -0.58
PDLIM7-208ENST00000493815 C5orf52A6NGY3 159 aa11.4□□□□□ -0.58
PDLIM7-208ENST00000493815 GAGE2BQ13066 116 aa11.4□□□□□ -0.58
PDLIM7-208ENST00000493815 RNF151Q2KHN1 245 aa11.4□□□□□ -0.58
PDLIM7-208ENST00000493815 SCXQ7RTU7 201 aa11.4□□□□□ -0.58
PDLIM7-208ENST00000493815 DPH3Q96FX2 82 aa11.4□□□□□ -0.58
PDLIM7-208ENST00000493815 TRBV30A0A0K0K1B3 111 aa11.39□□□□□ -0.59
PDLIM7-208ENST00000493815 CXCL5P42830 114 aa11.39□□□□□ -0.59
PDLIM7-208ENST00000493815 CIRBP-AS1Q8TBR5 109 aa11.39□□□□□ -0.59
PDLIM7-208ENST00000493815 TMA7Q9Y2S6 64 aaKnown RBP11.39□□□□□ -0.59
PDLIM7-208ENST00000493815 MAJINQ3KP22 176 aa11.38□□□□□ -0.59
PDLIM7-208ENST00000493815 Q6ZRP5 223 aa11.38□□□□□ -0.59
PDLIM7-208ENST00000493815 SPACA4Q8TDM5 124 aa11.38□□□□□ -0.59
PDLIM7-208ENST00000493815 PTTG1IPP53801 180 aa11.37□□□□□ -0.59
PDLIM7-208ENST00000493815 CIRBPQ14011 172 aaKnown RBP11.36□□□□□ -0.59
PDLIM7-208ENST00000493815 GAGE2EQ4V326 116 aa11.36□□□□□ -0.59
PDLIM7-208ENST00000493815 ZNF625Q96I27 306 aaPredicted RBP11.36□□□□□ -0.59
PDLIM7-208ENST00000493815 KRTAP17-1Q9BYP8 105 aa11.36□□□□□ -0.59
PDLIM7-208ENST00000493815 GAGE2DQ9UEU5 116 aa11.36□□□□□ -0.59
PDLIM7-208ENST00000493815 SMR3BP02814 79 aaPredicted RBP11.36□□□□□ -0.59
PDLIM7-208ENST00000493815 TSPEAR-AS2P59090 65 aa11.35□□□□□ -0.59
PDLIM7-208ENST00000493815 ATOH7Q8N100 152 aa11.35□□□□□ -0.59
PDLIM7-208ENST00000493815 STPG4Q8N801 248 aa11.35□□□□□ -0.59
PDLIM7-208ENST00000493815 A0A087WYN8 130 aa11.34□□□□□ -0.59
PDLIM7-208ENST00000493815 NDUFC2-KCTD14E9PQ53 114 aa11.34□□□□□ -0.59
PDLIM7-208ENST00000493815 TLX1NBP0CAT3 122 aa11.33□□□□□ -0.6
PDLIM7-208ENST00000493815 HERVK_113P61574 105 aa11.33□□□□□ -0.6
PDLIM7-208ENST00000493815 PKIGQ9Y2B9 76 aa11.33□□□□□ -0.6
PDLIM7-208ENST00000493815 C20orf202A1L168 122 aa11.33□□□□□ -0.6
PDLIM7-208ENST00000493815 LEPROTO15243 131 aa11.33□□□□□ -0.6
PDLIM7-208ENST00000493815 LINC00474Q9P2X8 69 aa11.32□□□□□ -0.6
PDLIM7-208ENST00000493815 HERC2O95714 4834 aa11.32□□□□□ -0.6
PDLIM7-208ENST00000493815 PFN2P35080 140 aa11.31□□□□□ -0.6
PDLIM7-208ENST00000493815 J3QQQ9 107 aa11.3□□□□□ -0.6
PDLIM7-208ENST00000493815 XAGE1AQ9HD64 81 aa11.3□□□□□ -0.6
PDLIM7-208ENST00000493815 NDUFA12Q9UI09 145 aa11.3□□□□□ -0.6
PDLIM7-208ENST00000493815 A0A1W2PNN7 141 aa11.3□□□□□ -0.6
PDLIM7-208ENST00000493815 FAM168BA1KXE4 195 aa11.3□□□□□ -0.6
PDLIM7-208ENST00000493815 PLEKHB2Q96CS7 222 aa11.3□□□□□ -0.6
PDLIM7-208ENST00000493815 E9PLD3 99 aa11.29□□□□□ -0.6
PDLIM7-208ENST00000493815 C9orf129Q5T035 196 aaKnown RBP11.29□□□□□ -0.6
PDLIM7-208ENST00000493815 PLAC8Q9NZF1 115 aa11.29□□□□□ -0.6
PDLIM7-208ENST00000493815 ERG28Q9UKR5 140 aa11.29□□□□□ -0.6
PDLIM7-208ENST00000493815 FAT1Q14517 4588 aa11.29□□□□□ -0.6
PDLIM7-208ENST00000493815 IGKV2D-26A0A0A0MRZ7 120 aa11.27□□□□□ -0.6
PDLIM7-208ENST00000493815 A0A0U1RRA0 63 aa11.27□□□□□ -0.6
PDLIM7-208ENST00000493815 LGALS3P17931 250 aaKnown RBP11.27□□□□□ -0.6
PDLIM7-208ENST00000493815 SFTA2Q6UW10 78 aa11.27□□□□□ -0.61
PDLIM7-208ENST00000493815 MYMXA0A1B0GTQ4 84 aa11.25□□□□□ -0.61
PDLIM7-208ENST00000493815 FAM19A5Q7Z5A7 132 aaPredicted RBP11.25□□□□□ -0.61
PDLIM7-208ENST00000493815 LINC00528Q8N1L1 170 aa11.25□□□□□ -0.61
PDLIM7-208ENST00000493815 TTTY13Q9BZ97 58 aa11.25□□□□□ -0.61
PDLIM7-208ENST00000493815 SCGB1D1O95968 90 aa11.24□□□□□ -0.61
PDLIM7-208ENST00000493815 LINC00158P58513 81 aa11.24□□□□□ -0.61
PDLIM7-208ENST00000493815 ANKRD39Q53RE8 183 aa11.24□□□□□ -0.61
PDLIM7-208ENST00000493815 KRTAP7-1Q8IUC3 87 aa11.24□□□□□ -0.61
PDLIM7-208ENST00000493815 Q8N1X5 172 aa11.24□□□□□ -0.61
PDLIM7-208ENST00000493815 SMIM13P0DJ93 91 aa11.24□□□□□ -0.61
PDLIM7-208ENST00000493815 S100A12P80511 92 aa11.24□□□□□ -0.61
PDLIM7-208ENST00000493815 MEIG1Q5JSS6 88 aa11.24□□□□□ -0.61
PDLIM7-208ENST00000493815 HERV-K104P63124 156 aa11.23□□□□□ -0.61
PDLIM7-208ENST00000493815 KRTAP4-5Q9BYR2 181 aa11.23□□□□□ -0.61
PDLIM7-208ENST00000493815 COX17Q14061 63 aa11.22□□□□□ -0.61
PDLIM7-208ENST00000493815 SERTAD4-AS1Q5TG53 156 aa11.22□□□□□ -0.61
PDLIM7-208ENST00000493815 NMUP48645 174 aa11.21□□□□□ -0.61
PDLIM7-208ENST00000493815 Q5VSD8 79 aa11.21□□□□□ -0.61
PDLIM7-208ENST00000493815 SND1-IT1Q9HBX3 110 aa11.21□□□□□ -0.61
PDLIM7-208ENST00000493815 AKR1D1P51857 326 aa11.2□□□□□ -0.62
PDLIM7-208ENST00000493815 EPM2AB3EWF7 344 aa11.2□□□□□ -0.62
PDLIM7-208ENST00000493815 PHF5AQ7RTV0 110 aaKnown RBP11.2□□□□□ -0.62
PDLIM7-208ENST00000493815 DAND5Q8N907 189 aa11.19□□□□□ -0.62
PDLIM7-208ENST00000493815 VPS13BQ7Z7G8 4022 aa11.18□□□□□ -0.62
PDLIM7-208ENST00000493815 ZNF815PA8K554 130 aa11.18□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 50.3 ms