RNA–Protein interactions for RNA: ENST00000484954.1

VPS50-216, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 4

Gene VPS50, Length 594 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-216ENST00000484954 HMGN4O00479 90 aa-0.51□□□□□ -2.49
VPS50-216ENST00000484954 MT1AP04731 61 aa-0.51□□□□□ -2.49
VPS50-216ENST00000484954 DCDP81605 110 aaKnown RBP-0.51□□□□□ -2.49
VPS50-216ENST00000484954 Q56UQ5 140 aa-0.51□□□□□ -2.49
VPS50-216ENST00000484954 ERCC6L2Q5T890 1561 aa-0.51□□□□□ -2.49
VPS50-216ENST00000484954 DEFB123Q8N688 67 aa-0.51□□□□□ -2.49
VPS50-216ENST00000484954 MGST2Q99735 147 aa-0.51□□□□□ -2.49
VPS50-216ENST00000484954 NAA60Q9H7X0 242 aa-0.51□□□□□ -2.49
VPS50-216ENST00000484954 DYNLRB1Q9NP97 96 aa-0.51□□□□□ -2.49
VPS50-216ENST00000484954 BICRAQ9NZM4 1560 aa-0.51□□□□□ -2.49
VPS50-216ENST00000484954 SPENQ96T58 3664 aaKnown RBP-0.51□□□□□ -2.49
VPS50-216ENST00000484954 ATMQ13315 3056 aa-0.51□□□□□ -2.49
VPS50-216ENST00000484954 ZNF236Q9UL36 1845 aa-0.52□□□□□ -2.49
VPS50-216ENST00000484954 DNAH5Q8TE73 4624 aa-0.52□□□□□ -2.49
VPS50-216ENST00000484954 IQSEC2Q5JU85 1478 aa-0.52□□□□□ -2.49
VPS50-216ENST00000484954 FXYD6-FXYD2A0A087WZ82 144 aa-0.52□□□□□ -2.49
VPS50-216ENST00000484954 PIGBOS1A0A0B4J2F0 54 aa-0.52□□□□□ -2.49
VPS50-216ENST00000484954 K7EP13 123 aa-0.52□□□□□ -2.49
VPS50-216ENST00000484954 COX17Q14061 63 aa-0.52□□□□□ -2.49
VPS50-216ENST00000484954 PIGYQ3MUY2 71 aa-0.52□□□□□ -2.49
VPS50-216ENST00000484954 COPS9Q8WXC6 57 aa-0.52□□□□□ -2.49
VPS50-216ENST00000484954 ARL11Q969Q4 196 aa-0.52□□□□□ -2.49
VPS50-216ENST00000484954 PPP3R2Q96LZ3 170 aa-0.52□□□□□ -2.49
VPS50-216ENST00000484954 SPRR4Q96PI1 79 aa-0.52□□□□□ -2.49
VPS50-216ENST00000484954 DYNC2H1Q8NCM8 4307 aaKnown RBP-0.52□□□□□ -2.49
VPS50-216ENST00000484954 MYOM3Q5VTT5 1437 aa-0.53□□□□□ -2.49
VPS50-216ENST00000484954 COX6B1P14854 86 aa-0.53□□□□□ -2.49
VPS50-216ENST00000484954 TPPP2P59282 170 aa-0.53□□□□□ -2.49
VPS50-216ENST00000484954 CCDC58Q4VC31 144 aa-0.53□□□□□ -2.49
VPS50-216ENST00000484954 ZNF436-AS1Q8NC38 126 aaPredicted RBP-0.53□□□□□ -2.49
VPS50-216ENST00000484954 KDM3BQ7LBC6 1761 aa-0.53□□□□□ -2.49
VPS50-216ENST00000484954 ARAP2Q8WZ64 1704 aa-0.53□□□□□ -2.49
VPS50-216ENST00000484954 NSD3Q9BZ95 1437 aa-0.54□□□□□ -2.5
VPS50-216ENST00000484954 DOCK1Q14185 1865 aa-0.54□□□□□ -2.5
VPS50-216ENST00000484954 TSC2P49815 1807 aa-0.54□□□□□ -2.5
VPS50-216ENST00000484954 OOSP1A8MZH6 123 aa-0.54□□□□□ -2.5
VPS50-216ENST00000484954 SFT2D2O95562 160 aa-0.54□□□□□ -2.5
VPS50-216ENST00000484954 TNFP01375 233 aa-0.54□□□□□ -2.5
VPS50-216ENST00000484954 MRPL54Q6P161 138 aaKnown RBP-0.54□□□□□ -2.5
VPS50-216ENST00000484954 COMMD6Q7Z4G1 85 aa-0.54□□□□□ -2.5
VPS50-216ENST00000484954 C5orf38Q86SI9 138 aa-0.54□□□□□ -2.5
VPS50-216ENST00000484954 MBD5Q9P267 1494 aa-0.54□□□□□ -2.5
VPS50-216ENST00000484954 WNK3Q9BYP7 1800 aa-0.54□□□□□ -2.5
VPS50-216ENST00000484954 CPSF1Q10570 1443 aaKnown RBP-0.55□□□□□ -2.5
VPS50-216ENST00000484954 PRDM2Q13029 1718 aa-0.55□□□□□ -2.5
VPS50-216ENST00000484954 FAM25AB3EWG3 89 aa-0.55□□□□□ -2.5
VPS50-216ENST00000484954 FAM25CB3EWG5 89 aa-0.55□□□□□ -2.5
VPS50-216ENST00000484954 FAM25GB3EWG6 89 aa-0.55□□□□□ -2.5
VPS50-216ENST00000484954 SSSCA1O60232 199 aa-0.55□□□□□ -2.5
VPS50-216ENST00000484954 SPINK4O60575 86 aa-0.55□□□□□ -2.5
VPS50-216ENST00000484954 APOC2P02655 101 aa-0.55□□□□□ -2.5
VPS50-216ENST00000484954 FGF7P21781 194 aa-0.55□□□□□ -2.5
VPS50-216ENST00000484954 CATR1Q13166 79 aa-0.55□□□□□ -2.5
VPS50-216ENST00000484954 DEFB135Q30KP9 77 aa-0.55□□□□□ -2.5
VPS50-216ENST00000484954 DEFB112Q30KQ8 113 aa-0.55□□□□□ -2.5
VPS50-216ENST00000484954 LELP1Q5T871 98 aa-0.55□□□□□ -2.5
VPS50-216ENST00000484954 TMEM263Q8WUH6 116 aaKnown RBP-0.55□□□□□ -2.5
VPS50-216ENST00000484954 CDC42SE2Q9NRR3 84 aa-0.55□□□□□ -2.5
VPS50-216ENST00000484954 LRRC37A2A6NM11 1700 aa-0.55□□□□□ -2.5
VPS50-216ENST00000484954 PAPPAQ13219 1627 aa-0.56□□□□□ -2.5
VPS50-216ENST00000484954 VPS13CQ709C8 3753 aa-0.56□□□□□ -2.5
VPS50-216ENST00000484954 DNAH17Q9UFH2 4485 aa-0.56□□□□□ -2.5
VPS50-216ENST00000484954 CDH23Q9H251 3354 aa-0.56□□□□□ -2.5
VPS50-216ENST00000484954 PDE4DIPQ5VU43 2346 aa-0.56□□□□□ -2.5
VPS50-216ENST00000484954 MIF4GDA9UHW6 222 aaKnown RBP-0.56□□□□□ -2.5
VPS50-216ENST00000484954 CHKB-CPT1BH3BT56 60 aa-0.56□□□□□ -2.5
VPS50-216ENST00000484954 APOC3P02656 99 aa-0.56□□□□□ -2.5
VPS50-216ENST00000484954 IGLC1P0CG04 106 aa-0.56□□□□□ -2.5
VPS50-216ENST00000484954 C8orf59Q8N0T1 100 aaPredicted RBP-0.56□□□□□ -2.5
VPS50-216ENST00000484954 DEFB105AQ8NG35 78 aa-0.56□□□□□ -2.5
VPS50-216ENST00000484954 USP34Q70CQ2 3546 aa-0.56□□□□□ -2.5
VPS50-216ENST00000484954 WDR7Q9Y4E6 1490 aa-0.56□□□□□ -2.5
VPS50-216ENST00000484954 PRUNE2Q8WUY3 3088 aa-0.57□□□□□ -2.5
VPS50-216ENST00000484954 LINC00959A0A1B0GUT2 108 aa-0.57□□□□□ -2.5
VPS50-216ENST00000484954 LOC285095A0A1B0GVY8 99 aa-0.57□□□□□ -2.5
VPS50-216ENST00000484954 S100A12P80511 92 aa-0.57□□□□□ -2.5
VPS50-216ENST00000484954 C10orf113Q5VZT2 155 aa-0.57□□□□□ -2.5
VPS50-216ENST00000484954 MYOZ3Q8TDC0 251 aa-0.57□□□□□ -2.5
VPS50-216ENST00000484954 FXYD6Q9H0Q3 95 aa-0.57□□□□□ -2.5
VPS50-216ENST00000484954 DPH3P1Q9H4G8 78 aa-0.57□□□□□ -2.5
VPS50-216ENST00000484954 SHANK2Q9UPX8 1470 aa-0.57□□□□□ -2.5
VPS50-216ENST00000484954 RIMS1Q86UR5 1692 aaKnown RBP-0.58□□□□□ -2.5
VPS50-216ENST00000484954 DNAH14Q0VDD8 3507 aa-0.58□□□□□ -2.5
VPS50-216ENST00000484954 MT1HP80294 61 aa-0.58□□□□□ -2.5
VPS50-216ENST00000484954 C9orf62Q8N4C0 152 aa-0.58□□□□□ -2.5
VPS50-216ENST00000484954 PP6455Q8WZ26 134 aa-0.58□□□□□ -2.5
VPS50-216ENST00000484954 NXT2Q9NPJ8 142 aaKnown RBP-0.58□□□□□ -2.5
VPS50-216ENST00000484954 UTRNP46939 3433 aa-0.58□□□□□ -2.5
VPS50-216ENST00000484954 TROQ12816 1431 aaPredicted RBP-0.58□□□□□ -2.5
VPS50-216ENST00000484954 NWD2Q9ULI1 1742 aa-0.58□□□□□ -2.5
VPS50-216ENST00000484954 TULP4Q9NRJ4 1543 aa-0.59□□□□□ -2.5
VPS50-216ENST00000484954 PATJQ8NI35 1801 aa-0.59□□□□□ -2.5
VPS50-216ENST00000484954 DNAH12Q6ZR08 3092 aa-0.59□□□□□ -2.5
VPS50-216ENST00000484954 CENPFP49454 3210 aa-0.59□□□□□ -2.5
VPS50-216ENST00000484954 IFNGP01579 166 aa-0.59□□□□□ -2.5
VPS50-216ENST00000484954 HMGN1P05114 100 aa-0.59□□□□□ -2.5
VPS50-216ENST00000484954 MGPP08493 103 aa-0.59□□□□□ -2.5
VPS50-216ENST00000484954 H1FX-AS1Q4G0G2 97 aa-0.59□□□□□ -2.5
VPS50-216ENST00000484954 APLNQ9ULZ1 77 aa-0.59□□□□□ -2.5
VPS50-216ENST00000484954 COL14A1Q05707 1796 aaKnown RBP-0.6□□□□□ -2.5
Retrieved 100 of 20,778 RNA–protein pairs in 234.2 ms