RNA–Protein interactions for RNA: ENST00000483519.5

USP40-214, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 1 (best)

Gene USP40, Length 2,722 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-214ENST00000483519 Q6YL49 198 aa9.37□□□□□ -0.91
USP40-214ENST00000483519 RETNQ9HD89 108 aa9.37□□□□□ -0.91
USP40-214ENST00000483519 VPS13CQ709C8 3753 aa9.37□□□□□ -0.91
USP40-214ENST00000483519 ORMDL1Q9P0S3 153 aa9.37□□□□□ -0.91
USP40-214ENST00000483519 USP17L23D6RBM5 183 aa9.36□□□□□ -0.91
USP40-214ENST00000483519 NCR3O14931 201 aa9.36□□□□□ -0.91
USP40-214ENST00000483519 PAX4O43316 350 aa9.36□□□□□ -0.91
USP40-214ENST00000483519 C11orf44Q8N8P7 122 aa9.36□□□□□ -0.91
USP40-214ENST00000483519 A0A087WVE0 104 aa9.35□□□□□ -0.91
USP40-214ENST00000483519 ODF3L2Q3SX64 289 aa9.35□□□□□ -0.91
USP40-214ENST00000483519 S100A7L2Q5SY68 101 aa9.35□□□□□ -0.91
USP40-214ENST00000483519 LINC01561Q8N1V8 128 aa9.35□□□□□ -0.91
USP40-214ENST00000483519 UPK3BQ9BT76 320 aa9.35□□□□□ -0.91
USP40-214ENST00000483519 TEX15Q9BXT5 2789 aa9.35□□□□□ -0.91
USP40-214ENST00000483519 IGKV3OR2-268A0A0C4DH90 116 aa9.34□□□□□ -0.91
USP40-214ENST00000483519 CYSTM1Q9H1C7 97 aa9.34□□□□□ -0.91
USP40-214ENST00000483519 FLNAP21333 2647 aaKnown RBP9.34□□□□□ -0.91
USP40-214ENST00000483519 IGHV3OR16-9A0A0B4J2B5 98 aa9.34□□□□□ -0.91
USP40-214ENST00000483519 PFN2P35080 140 aa9.34□□□□□ -0.91
USP40-214ENST00000483519 TMEM86BQ8N661 226 aa9.34□□□□□ -0.91
USP40-214ENST00000483519 TRBV6-4A0A1B0GX49 114 aa9.33□□□□□ -0.92
USP40-214ENST00000483519 LY6G6DO95868 133 aa9.33□□□□□ -0.92
USP40-214ENST00000483519 CCKP06307 115 aa9.33□□□□□ -0.92
USP40-214ENST00000483519 MAST4O15021 2626 aa9.33□□□□□ -0.92
USP40-214ENST00000483519 A0A087WZ39 114 aa9.33□□□□□ -0.92
USP40-214ENST00000483519 ATP5EP2Q5VTU8 51 aa9.33□□□□□ -0.92
USP40-214ENST00000483519 DPH3Q96FX2 82 aa9.33□□□□□ -0.92
USP40-214ENST00000483519 NOP10Q9NPE3 64 aaKnown RBP9.33□□□□□ -0.92
USP40-214ENST00000483519 JMJD7-PLA2G4BH0Y9G9 81 aa9.32□□□□□ -0.92
USP40-214ENST00000483519 SLPIP03973 132 aa9.32□□□□□ -0.92
USP40-214ENST00000483519 KRTAP1-1Q07627 177 aa9.32□□□□□ -0.92
USP40-214ENST00000483519 ACANP16112 2415 aa9.32□□□□□ -0.92
USP40-214ENST00000483519 TRGV2A0A075B6R0 118 aa9.32□□□□□ -0.92
USP40-214ENST00000483519 F8P00451 2351 aa9.31□□□□□ -0.92
USP40-214ENST00000483519 IGLV4-60A0A075B6I1 120 aa9.3□□□□□ -0.92
USP40-214ENST00000483519 OTOGQ6ZRI0 2925 aa9.3□□□□□ -0.92
USP40-214ENST00000483519 LOC100131303A0A0U1RQF7 123 aa9.3□□□□□ -0.92
USP40-214ENST00000483519 SS18Q15532 418 aa9.3□□□□□ -0.92
USP40-214ENST00000483519 C16orf74Q96GX8 76 aa9.3□□□□□ -0.92
USP40-214ENST00000483519 TRBV6-8A0A0A6YYG3 113 aa9.29□□□□□ -0.92
USP40-214ENST00000483519 LINC00336Q6ZUF6 198 aa9.29□□□□□ -0.92
USP40-214ENST00000483519 LINC00167Q96N53 147 aa9.29□□□□□ -0.92
USP40-214ENST00000483519 SMR3AQ99954 134 aa9.29□□□□□ -0.92
USP40-214ENST00000483519 TRGV4A0A0C4DH28 118 aa9.29□□□□□ -0.92
USP40-214ENST00000483519 MAP1AP78559 2803 aaPredicted RBP9.28□□□□□ -0.92
USP40-214ENST00000483519 HIVEP2P31629 2446 aa9.28□□□□□ -0.92
USP40-214ENST00000483519 TMEM256-PLSCR3K7ERE1 68 aa9.27□□□□□ -0.92
USP40-214ENST00000483519 HIVEP1P15822 2718 aa9.27□□□□□ -0.93
USP40-214ENST00000483519 C4orf26Q17RF5 130 aa9.27□□□□□ -0.93
USP40-214ENST00000483519 CSMD2Q7Z408 3487 aa9.27□□□□□ -0.93
USP40-214ENST00000483519 DSCR8Q96T75 97 aa9.26□□□□□ -0.93
USP40-214ENST00000483519 GHRHP01286 108 aa9.26□□□□□ -0.93
USP40-214ENST00000483519 Q8N814 137 aa9.26□□□□□ -0.93
USP40-214ENST00000483519 C11orf68Q9H3H3 251 aaKnown RBP9.26□□□□□ -0.93
USP40-214ENST00000483519 LINC00959A0A1B0GUT2 108 aa9.25□□□□□ -0.93
USP40-214ENST00000483519 PLAC8L1A1L4L8 177 aa9.25□□□□□ -0.93
USP40-214ENST00000483519 NDUFC2-KCTD14E9PQ53 114 aa9.25□□□□□ -0.93
USP40-214ENST00000483519 NDUFC2O95298 119 aa9.25□□□□□ -0.93
USP40-214ENST00000483519 TLN2Q9Y4G6 2542 aa9.25□□□□□ -0.93
USP40-214ENST00000483519 TRBV10-3A0A0K0K1G6 114 aa9.25□□□□□ -0.93
USP40-214ENST00000483519 UBL5Q9BZL1 73 aa9.25□□□□□ -0.93
USP40-214ENST00000483519 HILS1P60008 231 aa9.24□□□□□ -0.93
USP40-214ENST00000483519 Q8IZM0 81 aa9.24□□□□□ -0.93
USP40-214ENST00000483519 LYPD5Q6UWN5 251 aa9.24□□□□□ -0.93
USP40-214ENST00000483519 RPL35AP18077 110 aaKnown RBP9.23□□□□□ -0.93
USP40-214ENST00000483519 FHL2Q14192 279 aa9.23□□□□□ -0.93
USP40-214ENST00000483519 TRAV23DV6A0A075B6W5 121 aa9.23□□□□□ -0.93
USP40-214ENST00000483519 INAFM1C9JVW0 142 aa9.23□□□□□ -0.93
USP40-214ENST00000483519 CMC4P56277 68 aaPredicted RBP9.23□□□□□ -0.93
USP40-214ENST00000483519 AKAP9Q99996 3911 aa9.23□□□□□ -0.93
USP40-214ENST00000483519 OXTP01178 125 aa9.22□□□□□ -0.93
USP40-214ENST00000483519 GIG44P09565 113 aaPredicted RBP9.22□□□□□ -0.93
USP40-214ENST00000483519 ENHOQ6UWT2 76 aa9.22□□□□□ -0.93
USP40-214ENST00000483519 XCL1P47992 114 aa9.21□□□□□ -0.93
USP40-214ENST00000483519 NANOS2P60321 138 aaKnown RBP9.21□□□□□ -0.93
USP40-214ENST00000483519 WFDC9Q8NEX5 89 aa9.21□□□□□ -0.93
USP40-214ENST00000483519 FAM19A1Q7Z5A9 133 aa9.21□□□□□ -0.94
USP40-214ENST00000483519 SONP18583 2426 aaKnown RBP9.2□□□□□ -0.94
USP40-214ENST00000483519 H3BS24 57 aa9.2□□□□□ -0.94
USP40-214ENST00000483519 C2CD3Q4AC94 2353 aa9.19□□□□□ -0.94
USP40-214ENST00000483519 CCL24O00175 119 aa9.19□□□□□ -0.94
USP40-214ENST00000483519 COX17Q14061 63 aa9.19□□□□□ -0.94
USP40-214ENST00000483519 ZANQ9Y493 2812 aa9.18□□□□□ -0.94
USP40-214ENST00000483519 SERTAD4-AS1Q5TG53 156 aa9.18□□□□□ -0.94
USP40-214ENST00000483519 PKIGQ9Y2B9 76 aa9.18□□□□□ -0.94
USP40-214ENST00000483519 BCE1O60756 84 aa9.18□□□□□ -0.94
USP40-214ENST00000483519 PRR3P79522 188 aaKnown RBP9.18□□□□□ -0.94
USP40-214ENST00000483519 C20orf197Q8N268 126 aa9.18□□□□□ -0.94
USP40-214ENST00000483519 A0A1B0GUV1 79 aa9.17□□□□□ -0.94
USP40-214ENST00000483519 RNASE1P07998 156 aaKnown RBP9.17□□□□□ -0.94
USP40-214ENST00000483519 Q5XG85 94 aa9.17□□□□□ -0.94
USP40-214ENST00000483519 MTORP42345 2549 aa9.16□□□□□ -0.94
USP40-214ENST00000483519 FAM236DA0A1B0GTK5 79 aa9.16□□□□□ -0.94
USP40-214ENST00000483519 FAM236CP0DP71 79 aa9.16□□□□□ -0.94
USP40-214ENST00000483519 RBM3P98179 157 aaKnown RBP9.16□□□□□ -0.94
USP40-214ENST00000483519 CSNK1G2-AS1Q8NCQ2 148 aa9.16□□□□□ -0.94
USP40-214ENST00000483519 FN1P02751 2386 aaKnown RBP9.15□□□□□ -0.94
USP40-214ENST00000483519 C6orf99Q4VX62 202 aa9.15□□□□□ -0.94
USP40-214ENST00000483519 PRO0628Q9UI54 55 aa9.15□□□□□ -0.94
USP40-214ENST00000483519 Q6ZQT0 140 aa9.15□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 161.5 ms