RNA–Protein interactions for RNA: ENST00000483506.1

HDAC6-225, Transcript of histone deacetylase 6, humanhuman

TSL 4

Gene HDAC6, Length 545 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-225ENST00000483506 C7orf33Q8WU49 177 aa11.29□□□□□ -0.6
HDAC6-225ENST00000483506 PACRGQ96M98 296 aaPredicted RBP11.29□□□□□ -0.6
HDAC6-225ENST00000483506 ATP5LO75964 103 aa11.28□□□□□ -0.6
HDAC6-225ENST00000483506 TRGC2P03986 189 aa11.28□□□□□ -0.6
HDAC6-225ENST00000483506 PRSS2P07478 247 aa11.28□□□□□ -0.6
HDAC6-225ENST00000483506 IGLC3P0DOY3 106 aa11.28□□□□□ -0.6
HDAC6-225ENST00000483506 COLCA2A8K830 154 aa11.27□□□□□ -0.61
HDAC6-225ENST00000483506 Q6ZRP5 223 aa11.27□□□□□ -0.61
HDAC6-225ENST00000483506 A0A1W2PNN7 141 aa11.26□□□□□ -0.61
HDAC6-225ENST00000483506 CXCL5P42830 114 aa11.26□□□□□ -0.61
HDAC6-225ENST00000483506 C6orf226Q5I0X4 101 aa11.26□□□□□ -0.61
HDAC6-225ENST00000483506 TOMM7Q9P0U1 55 aa11.26□□□□□ -0.61
HDAC6-225ENST00000483506 HNRNPA3P51991 378 aaKnown RBP11.25□□□□□ -0.61
HDAC6-225ENST00000483506 CKS1BP61024 79 aa11.25□□□□□ -0.61
HDAC6-225ENST00000483506 NDUFC2-KCTD14E9PQ53 114 aa11.24□□□□□ -0.61
HDAC6-225ENST00000483506 C9orf116Q5BN46 136 aaPredicted RBP11.24□□□□□ -0.61
HDAC6-225ENST00000483506 F8VRH5 84 aa11.23□□□□□ -0.61
HDAC6-225ENST00000483506 H3BRM9 83 aa11.23□□□□□ -0.61
HDAC6-225ENST00000483506 KRTAP29-1A8MX34 341 aaPredicted RBP11.22□□□□□ -0.61
HDAC6-225ENST00000483506 NDUFA6P56556 154 aa11.22□□□□□ -0.61
HDAC6-225ENST00000483506 PRR3P79522 188 aaKnown RBP11.22□□□□□ -0.61
HDAC6-225ENST00000483506 LRP1Q07954 4544 aaKnown RBP11.22□□□□□ -0.61
HDAC6-225ENST00000483506 BAGE3Q86Y29 109 aa11.22□□□□□ -0.61
HDAC6-225ENST00000483506 COX7B2Q8TF08 81 aa11.22□□□□□ -0.61
HDAC6-225ENST00000483506 FAT3Q8TDW7 4589 aa11.22□□□□□ -0.61
HDAC6-225ENST00000483506 IGLV5-39A0A0G2JS06 123 aa11.21□□□□□ -0.61
HDAC6-225ENST00000483506 SPINK8P0C7L1 97 aa11.21□□□□□ -0.61
HDAC6-225ENST00000483506 ZNF22P17026 224 aaPredicted RBP11.21□□□□□ -0.61
HDAC6-225ENST00000483506 LINC00310P59036 64 aa11.21□□□□□ -0.61
HDAC6-225ENST00000483506 TRAV12-1A0A0B4J245 112 aa11.2□□□□□ -0.62
HDAC6-225ENST00000483506 HSBP1O75506 76 aa11.2□□□□□ -0.62
HDAC6-225ENST00000483506 GAGE2EQ4V326 116 aa11.2□□□□□ -0.62
HDAC6-225ENST00000483506 IFI27L1Q96BM0 104 aa11.2□□□□□ -0.62
HDAC6-225ENST00000483506 GAGE2DQ9UEU5 116 aa11.2□□□□□ -0.62
HDAC6-225ENST00000483506 HERC1Q15751 4861 aa11.19□□□□□ -0.62
HDAC6-225ENST00000483506 C11orf86A6NJI1 115 aa11.18□□□□□ -0.62
HDAC6-225ENST00000483506 C9orf129Q5T035 196 aaKnown RBP11.18□□□□□ -0.62
HDAC6-225ENST00000483506 FAM19A2Q8N3H0 131 aa11.18□□□□□ -0.62
HDAC6-225ENST00000483506 FAM168BA1KXE4 195 aa11.17□□□□□ -0.62
HDAC6-225ENST00000483506 SERF1AO75920 110 aa11.17□□□□□ -0.62
HDAC6-225ENST00000483506 OXTP01178 125 aa11.17□□□□□ -0.62
HDAC6-225ENST00000483506 KRTAP7-1Q8IUC3 87 aa11.17□□□□□ -0.62
HDAC6-225ENST00000483506 CHTOPQ9Y3Y2 248 aaKnown RBP11.17□□□□□ -0.62
HDAC6-225ENST00000483506 SCO1O75880 301 aa11.16□□□□□ -0.62
HDAC6-225ENST00000483506 ODF1Q14990 250 aa11.15□□□□□ -0.62
HDAC6-225ENST00000483506 PHF5AQ7RTV0 110 aaKnown RBP11.15□□□□□ -0.62
HDAC6-225ENST00000483506 FAM19A5Q7Z5A7 132 aaPredicted RBP11.14□□□□□ -0.63
HDAC6-225ENST00000483506 TMEM170BQ5T4T1 132 aa11.13□□□□□ -0.63
HDAC6-225ENST00000483506 J3QL48 77 aa11.12□□□□□ -0.63
HDAC6-225ENST00000483506 NUPR1O60356 82 aa11.12□□□□□ -0.63
HDAC6-225ENST00000483506 LEPROTL1O95214 131 aa11.12□□□□□ -0.63
HDAC6-225ENST00000483506 PSORS1C2Q9UIG4 136 aa11.12□□□□□ -0.63
HDAC6-225ENST00000483506 TMEM223A0PJW6 202 aa11.1□□□□□ -0.63
HDAC6-225ENST00000483506 M0QXV9 152 aa11.1□□□□□ -0.63
HDAC6-225ENST00000483506 SRSF9Q13242 221 aaKnown RBP eCLIP11.1□□□□□ -0.63
HDAC6-225ENST00000483506 SFTA2Q6UW10 78 aa11.1□□□□□ -0.63
HDAC6-225ENST00000483506 XAGE1AQ9HD64 81 aa11.1□□□□□ -0.63
HDAC6-225ENST00000483506 HIST1H2BKO60814 126 aa11.09□□□□□ -0.63
HDAC6-225ENST00000483506 HIST1H2BJP06899 126 aa11.09□□□□□ -0.63
HDAC6-225ENST00000483506 HIST1H2BOP23527 126 aa11.09□□□□□ -0.63
HDAC6-225ENST00000483506 HIST1H2BBP33778 126 aa11.09□□□□□ -0.63
HDAC6-225ENST00000483506 HIST1H2BDP58876 126 aa11.09□□□□□ -0.63
HDAC6-225ENST00000483506 HIST1H2BCP62807 126 aa11.09□□□□□ -0.63
HDAC6-225ENST00000483506 HIST2H2BEQ16778 126 aa11.09□□□□□ -0.63
HDAC6-225ENST00000483506 HIST2H2BFQ5QNW6 126 aaPredicted RBP11.09□□□□□ -0.63
HDAC6-225ENST00000483506 SERTAD4-AS1Q5TG53 156 aa11.09□□□□□ -0.63
HDAC6-225ENST00000483506 SPINK6Q6UWN8 80 aa11.09□□□□□ -0.63
HDAC6-225ENST00000483506 HIST1H2BHQ93079 126 aa11.09□□□□□ -0.63
HDAC6-225ENST00000483506 HIST1H2BNQ99877 126 aa11.09□□□□□ -0.63
HDAC6-225ENST00000483506 HIST1H2BMQ99879 126 aa11.09□□□□□ -0.63
HDAC6-225ENST00000483506 HSPB8Q9UJY1 196 aa11.09□□□□□ -0.63
HDAC6-225ENST00000483506 KRTAP11-1Q8IUC1 163 aa11.08□□□□□ -0.64
HDAC6-225ENST00000483506 ZNF625Q96I27 306 aaPredicted RBP11.08□□□□□ -0.64
HDAC6-225ENST00000483506 TP73-AS1Q9UF72 201 aa11.07□□□□□ -0.64
HDAC6-225ENST00000483506 PLA2G2DQ9UNK4 145 aa11.07□□□□□ -0.64
HDAC6-225ENST00000483506 COX17Q14061 63 aa11.06□□□□□ -0.64
HDAC6-225ENST00000483506 C1orf137Q5JT78 98 aa11.05□□□□□ -0.64
HDAC6-225ENST00000483506 ERG28Q9UKR5 140 aa11.05□□□□□ -0.64
HDAC6-225ENST00000483506 C22orf24Q9Y442 160 aa11.05□□□□□ -0.64
HDAC6-225ENST00000483506 IGLV5-37A0A075B6J1 123 aa11.03□□□□□ -0.64
HDAC6-225ENST00000483506 H0Y8G0 127 aa11.03□□□□□ -0.64
HDAC6-225ENST00000483506 FABP4P15090 132 aa11.03□□□□□ -0.64
HDAC6-225ENST00000483506 PLNP26678 52 aa11.03□□□□□ -0.64
HDAC6-225ENST00000483506 TNXBP22105 4242 aa11.02□□□□□ -0.65
HDAC6-225ENST00000483506 MT1HL1P0DM35 61 aa11.02□□□□□ -0.65
HDAC6-225ENST00000483506 UBE2BP63146 152 aa11.02□□□□□ -0.65
HDAC6-225ENST00000483506 LBHQ53QV2 105 aaPredicted RBP11.02□□□□□ -0.65
HDAC6-225ENST00000483506 IGLV7-43P04211 117 aa11.01□□□□□ -0.65
HDAC6-225ENST00000483506 PFN2P35080 140 aa11.01□□□□□ -0.65
HDAC6-225ENST00000483506 MRPL55Q7Z7F7 128 aaKnown RBP11.01□□□□□ -0.65
HDAC6-225ENST00000483506 COA6Q5JTJ3 125 aaKnown RBP11□□□□□ -0.65
HDAC6-225ENST00000483506 LINC01600Q96MT4 127 aa11□□□□□ -0.65
HDAC6-225ENST00000483506 DPM2O94777 84 aa10.99□□□□□ -0.65
HDAC6-225ENST00000483506 REG3GQ6UW15 175 aa10.99□□□□□ -0.65
HDAC6-225ENST00000483506 MAP1LC3CQ9BXW4 147 aa10.99□□□□□ -0.65
HDAC6-225ENST00000483506 SND1-IT1Q9HBX3 110 aa10.99□□□□□ -0.65
HDAC6-225ENST00000483506 IGKCP01834 107 aa10.97□□□□□ -0.65
HDAC6-225ENST00000483506 S100A1P23297 94 aa10.97□□□□□ -0.65
HDAC6-225ENST00000483506 LEPROTO15243 131 aa10.96□□□□□ -0.65
HDAC6-225ENST00000483506 HERV-K104P63124 156 aa10.96□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 99.1 ms