RNA–Protein interactions for RNA: ENST00000482879.5

SDC1-206, Transcript of syndecan 1, humanhuman

TSL 4

Gene SDC1, Length 558 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-206ENST00000482879 CXCL5P42830 114 aa7.95□□□□□ -1.14
SDC1-206ENST00000482879 Q6ZRU5 148 aa7.95□□□□□ -1.14
SDC1-206ENST00000482879 CARD19Q96LW7 228 aa7.95□□□□□ -1.14
SDC1-206ENST00000482879 HSBP1L1C9JCN9 74 aa7.94□□□□□ -1.14
SDC1-206ENST00000482879 C10orf25Q5T742 122 aa7.94□□□□□ -1.14
SDC1-206ENST00000482879 J3QQQ9 107 aa7.93□□□□□ -1.14
SDC1-206ENST00000482879 LGALS3P17931 250 aaKnown RBP7.93□□□□□ -1.14
SDC1-206ENST00000482879 TSPEAR-AS2P59090 65 aa7.93□□□□□ -1.14
SDC1-206ENST00000482879 MAJINQ3KP22 176 aa7.93□□□□□ -1.14
SDC1-206ENST00000482879 ANKRD39Q53RE8 183 aa7.93□□□□□ -1.14
SDC1-206ENST00000482879 PYY3Q5JQD4 70 aa7.93□□□□□ -1.14
SDC1-206ENST00000482879 CDPF1Q6NVV7 123 aa7.93□□□□□ -1.14
SDC1-206ENST00000482879 C9orf163Q8N9P6 203 aa7.93□□□□□ -1.14
SDC1-206ENST00000482879 LINC01620Q4KN68 170 aa7.92□□□□□ -1.14
SDC1-206ENST00000482879 C6orf48Q9UBA6 75 aa7.92□□□□□ -1.14
SDC1-206ENST00000482879 NDUFA12Q9UI09 145 aa7.92□□□□□ -1.14
SDC1-206ENST00000482879 DNAH11Q96DT5 4516 aa7.91□□□□□ -1.14
SDC1-206ENST00000482879 IGKV2D-26A0A0A0MRZ7 120 aa7.91□□□□□ -1.14
SDC1-206ENST00000482879 TRBV30A0A0K0K1B3 111 aa7.91□□□□□ -1.14
SDC1-206ENST00000482879 LOC105371267A0A1B0GV96 52 aa7.91□□□□□ -1.14
SDC1-206ENST00000482879 RNF151Q2KHN1 245 aa7.91□□□□□ -1.14
SDC1-206ENST00000482879 ZNF625Q96I27 306 aaPredicted RBP7.91□□□□□ -1.14
SDC1-206ENST00000482879 PKD1P98161 4303 aa7.91□□□□□ -1.14
SDC1-206ENST00000482879 MYMXA0A1B0GTQ4 84 aa7.9□□□□□ -1.14
SDC1-206ENST00000482879 GCSHP23434 173 aa7.9□□□□□ -1.14
SDC1-206ENST00000482879 NMUP48645 174 aa7.9□□□□□ -1.14
SDC1-206ENST00000482879 C9orf116Q5BN46 136 aaPredicted RBP7.9□□□□□ -1.14
SDC1-206ENST00000482879 SFTA2Q6UW10 78 aa7.9□□□□□ -1.14
SDC1-206ENST00000482879 C16orf90A8MZG2 172 aa7.89□□□□□ -1.15
SDC1-206ENST00000482879 HECTD4Q9Y4D8 3996 aa7.88□□□□□ -1.15
SDC1-206ENST00000482879 HERV-K104P63124 156 aa7.88□□□□□ -1.15
SDC1-206ENST00000482879 SDIM1Q6ZPB5 146 aa7.88□□□□□ -1.15
SDC1-206ENST00000482879 VAMP8Q9BV40 100 aa7.88□□□□□ -1.15
SDC1-206ENST00000482879 TTTY13Q9BZ97 58 aa7.88□□□□□ -1.15
SDC1-206ENST00000482879 LOC107984640A0A0U1RRK4 108 aa7.87□□□□□ -1.15
SDC1-206ENST00000482879 ZNF815PA8K554 130 aa7.87□□□□□ -1.15
SDC1-206ENST00000482879 PKIGQ9Y2B9 76 aa7.87□□□□□ -1.15
SDC1-206ENST00000482879 PAM16Q9Y3D7 125 aa7.87□□□□□ -1.15
SDC1-206ENST00000482879 TLX1NBP0CAT3 122 aa7.86□□□□□ -1.15
SDC1-206ENST00000482879 PFN2P35080 140 aa7.86□□□□□ -1.15
SDC1-206ENST00000482879 KRTAP10-1P60331 282 aa7.86□□□□□ -1.15
SDC1-206ENST00000482879 RPL18AQ02543 176 aaKnown RBP7.86□□□□□ -1.15
SDC1-206ENST00000482879 GAGE2BQ13066 116 aa7.86□□□□□ -1.15
SDC1-206ENST00000482879 SPATA45Q537H7 98 aa7.86□□□□□ -1.15
SDC1-206ENST00000482879 MEIG1Q5JSS6 88 aa7.86□□□□□ -1.15
SDC1-206ENST00000482879 PCP2Q8IVA1 136 aa7.86□□□□□ -1.15
SDC1-206ENST00000482879 ERG28Q9UKR5 140 aa7.86□□□□□ -1.15
SDC1-206ENST00000482879 NDUFC2-KCTD14E9PQ53 114 aa7.85□□□□□ -1.15
SDC1-206ENST00000482879 LINC00158P58513 81 aa7.85□□□□□ -1.15
SDC1-206ENST00000482879 DNAH5Q8TE73 4624 aa7.84□□□□□ -1.15
SDC1-206ENST00000482879 IGKV2-24A0A0C4DH68 120 aa7.84□□□□□ -1.15
SDC1-206ENST00000482879 A0A0J9YXY3 114 aa7.84□□□□□ -1.15
SDC1-206ENST00000482879 A0A0U1RRA0 63 aa7.84□□□□□ -1.15
SDC1-206ENST00000482879 LINC00587B1AMM8 73 aa7.84□□□□□ -1.15
SDC1-206ENST00000482879 SMIM13P0DJ93 91 aa7.84□□□□□ -1.15
SDC1-206ENST00000482879 COX17Q14061 63 aa7.84□□□□□ -1.15
SDC1-206ENST00000482879 GAGE2EQ4V326 116 aa7.84□□□□□ -1.15
SDC1-206ENST00000482879 Q6ZRP5 223 aa7.84□□□□□ -1.15
SDC1-206ENST00000482879 GAGE2DQ9UEU5 116 aa7.84□□□□□ -1.15
SDC1-206ENST00000482879 A0A096LNI7 61 aa7.83□□□□□ -1.16
SDC1-206ENST00000482879 PTTG1IPP53801 180 aa7.83□□□□□ -1.16
SDC1-206ENST00000482879 S100A12P80511 92 aa7.83□□□□□ -1.16
SDC1-206ENST00000482879 CHTF8P0CG12 524 aa7.82□□□□□ -1.16
SDC1-206ENST00000482879 SMIM6P0DI80 62 aa7.82□□□□□ -1.16
SDC1-206ENST00000482879 COX8AP10176 69 aa7.82□□□□□ -1.16
SDC1-206ENST00000482879 CIRBPQ14011 172 aaKnown RBP7.82□□□□□ -1.16
SDC1-206ENST00000482879 SCGB1D4Q6XE38 83 aa7.82□□□□□ -1.16
SDC1-206ENST00000482879 DPH3Q96FX2 82 aa7.82□□□□□ -1.16
SDC1-206ENST00000482879 C14orf144Q96I85 54 aa7.82□□□□□ -1.16
SDC1-206ENST00000482879 FAM30AQ9NZY2 134 aa7.81□□□□□ -1.16
SDC1-206ENST00000482879 LINC00474Q9P2X8 69 aa7.81□□□□□ -1.16
SDC1-206ENST00000482879 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP7.81□□□□□ -1.16
SDC1-206ENST00000482879 PKHD1P08F94 4074 aa7.81□□□□□ -1.16
SDC1-206ENST00000482879 PANO1I0J062 215 aa7.8□□□□□ -1.16
SDC1-206ENST00000482879 TIMM17BO60830 172 aa7.8□□□□□ -1.16
SDC1-206ENST00000482879 BOD1L2Q8IYS8 172 aa7.8□□□□□ -1.16
SDC1-206ENST00000482879 MIR7-3HGQ8N6C7 128 aa7.8□□□□□ -1.16
SDC1-206ENST00000482879 XAGE1AQ9HD64 81 aa7.8□□□□□ -1.16
SDC1-206ENST00000482879 DLEU1O43261 78 aa7.79□□□□□ -1.16
SDC1-206ENST00000482879 ADAMTSL4-AS1Q5T5F5 129 aa7.79□□□□□ -1.16
SDC1-206ENST00000482879 DAND5Q8N907 189 aa7.79□□□□□ -1.16
SDC1-206ENST00000482879 SPACA4Q8TDM5 124 aa7.79□□□□□ -1.16
SDC1-206ENST00000482879 SND1-IT1Q9HBX3 110 aa7.79□□□□□ -1.16
SDC1-206ENST00000482879 C9orf129Q5T035 196 aaKnown RBP7.78□□□□□ -1.16
SDC1-206ENST00000482879 SLC25A34Q6PIV7 304 aa7.78□□□□□ -1.16
SDC1-206ENST00000482879 Q6ZSA8 131 aa7.78□□□□□ -1.16
SDC1-206ENST00000482879 TP73-AS1Q9UF72 201 aa7.78□□□□□ -1.16
SDC1-206ENST00000482879 LITAFQ99732 161 aa7.77□□□□□ -1.17
SDC1-206ENST00000482879 DYNC1H1Q14204 4646 aaKnown RBP7.77□□□□□ -1.17
SDC1-206ENST00000482879 A0A087WYN8 130 aa7.76□□□□□ -1.17
SDC1-206ENST00000482879 A0A1W2PNN7 141 aa7.76□□□□□ -1.17
SDC1-206ENST00000482879 TMEM238C9JI98 176 aa7.76□□□□□ -1.17
SDC1-206ENST00000482879 C12orf57Q99622 126 aa7.76□□□□□ -1.17
SDC1-206ENST00000482879 LRP1BQ9NZR2 4599 aa7.76□□□□□ -1.17
SDC1-206ENST00000482879 FAM168BA1KXE4 195 aa7.75□□□□□ -1.17
SDC1-206ENST00000482879 NPC2P61916 151 aa7.75□□□□□ -1.17
SDC1-206ENST00000482879 HAMPP81172 84 aa7.75□□□□□ -1.17
SDC1-206ENST00000482879 DNAH8Q96JB1 4490 aa7.75□□□□□ -1.17
SDC1-206ENST00000482879 SRSF9Q13242 221 aaKnown RBP eCLIP7.74□□□□□ -1.17
SDC1-206ENST00000482879 SCXQ7RTU7 201 aa7.74□□□□□ -1.17
Retrieved 100 of 20,778 RNA–protein pairs in 54.2 ms