RNA–Protein interactions for RNA: ENST00000474929.1

USP54-211, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 4

Gene USP54, Length 590 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-211ENST00000474929 KRTAP4-11Q9BYQ6 195 aa4.49□□□□□ -1.69
USP54-211ENST00000474929 OSTCQ9NRP0 149 aa4.49□□□□□ -1.69
USP54-211ENST00000474929 IGLV8-61A0A075B6I0 122 aa4.48□□□□□ -1.69
USP54-211ENST00000474929 LINC00959A0A1B0GUT2 108 aa4.48□□□□□ -1.69
USP54-211ENST00000474929 FAM168BA1KXE4 195 aa4.48□□□□□ -1.69
USP54-211ENST00000474929 HIGD1CA8MV81 97 aa4.48□□□□□ -1.69
USP54-211ENST00000474929 COX7A2LO14548 114 aa4.48□□□□□ -1.69
USP54-211ENST00000474929 NCR2O95944 276 aa4.48□□□□□ -1.69
USP54-211ENST00000474929 C4orf48Q5BLP8 95 aa4.48□□□□□ -1.69
USP54-211ENST00000474929 GATD1Q8NB37 220 aa4.48□□□□□ -1.69
USP54-211ENST00000474929 PACRGQ96M98 296 aaPredicted RBP4.48□□□□□ -1.69
USP54-211ENST00000474929 CNFNQ9BYD5 112 aa4.48□□□□□ -1.69
USP54-211ENST00000474929 NIT2Q9NQR4 276 aa4.48□□□□□ -1.69
USP54-211ENST00000474929 V9GYV3 84 aa4.48□□□□□ -1.69
USP54-211ENST00000474929 A0A1B0GUT8 65 aa4.47□□□□□ -1.69
USP54-211ENST00000474929 KRTAP4-16G5E9R7 235 aaPredicted RBP4.47□□□□□ -1.69
USP54-211ENST00000474929 BCE1O60756 84 aa4.47□□□□□ -1.69
USP54-211ENST00000474929 HIST1H2BKO60814 126 aa4.47□□□□□ -1.69
USP54-211ENST00000474929 HIST1H2BJP06899 126 aa4.47□□□□□ -1.69
USP54-211ENST00000474929 HIST1H2BOP23527 126 aa4.47□□□□□ -1.69
USP54-211ENST00000474929 HIST1H2BBP33778 126 aa4.47□□□□□ -1.69
USP54-211ENST00000474929 HIST1H2BDP58876 126 aa4.47□□□□□ -1.69
USP54-211ENST00000474929 HIST1H2BCP62807 126 aa4.47□□□□□ -1.69
USP54-211ENST00000474929 SPAG11BQ08648 103 aa4.47□□□□□ -1.69
USP54-211ENST00000474929 RIGQ13278 110 aa4.47□□□□□ -1.69
USP54-211ENST00000474929 HIST2H2BEQ16778 126 aa4.47□□□□□ -1.69
USP54-211ENST00000474929 CT83Q5H943 113 aa4.47□□□□□ -1.69
USP54-211ENST00000474929 HIST2H2BFQ5QNW6 126 aaPredicted RBP4.47□□□□□ -1.69
USP54-211ENST00000474929 OR10D4PQ8NGN7 298 aa4.47□□□□□ -1.69
USP54-211ENST00000474929 HIST1H2BHQ93079 126 aa4.47□□□□□ -1.69
USP54-211ENST00000474929 RPL39LQ96EH5 51 aaKnown RBP4.47□□□□□ -1.69
USP54-211ENST00000474929 HIST1H2BNQ99877 126 aa4.47□□□□□ -1.69
USP54-211ENST00000474929 HIST1H2BMQ99879 126 aa4.47□□□□□ -1.69
USP54-211ENST00000474929 A6NJY4 79 aa4.46□□□□□ -1.7
USP54-211ENST00000474929 NDUFA1O15239 70 aa4.46□□□□□ -1.7
USP54-211ENST00000474929 MRPL52Q86TS9 123 aaKnown RBP4.46□□□□□ -1.7
USP54-211ENST00000474929 OPRPNQ99935 248 aaPredicted RBP4.46□□□□□ -1.7
USP54-211ENST00000474929 SMKR1H3BMG3 65 aa4.45□□□□□ -1.7
USP54-211ENST00000474929 APCSP02743 223 aa4.45□□□□□ -1.7
USP54-211ENST00000474929 RAB4AP20338 218 aa4.45□□□□□ -1.7
USP54-211ENST00000474929 PMCHP20382 165 aa4.45□□□□□ -1.7
USP54-211ENST00000474929 AMN1Q8IY45 258 aa4.45□□□□□ -1.7
USP54-211ENST00000474929 HIST3H2BBQ8N257 126 aa4.45□□□□□ -1.7
USP54-211ENST00000474929 NAT8BQ9UHF3 227 aa4.45□□□□□ -1.7
USP54-211ENST00000474929 FLGP20930 4061 aaPredicted RBP4.45□□□□□ -1.7
USP54-211ENST00000474929 SMIM27A0A1W2PRY6 76 aa4.44□□□□□ -1.7
USP54-211ENST00000474929 SDHAF1A6NFY7 115 aa4.44□□□□□ -1.7
USP54-211ENST00000474929 TSTD3H0UI37 97 aa4.44□□□□□ -1.7
USP54-211ENST00000474929 TRGC2P03986 189 aa4.44□□□□□ -1.7
USP54-211ENST00000474929 NDUFA6P56556 154 aa4.44□□□□□ -1.7
USP54-211ENST00000474929 JOSD1Q15040 202 aaPredicted RBP4.44□□□□□ -1.7
USP54-211ENST00000474929 GAGE2EQ4V326 116 aa4.44□□□□□ -1.7
USP54-211ENST00000474929 MRPL54Q6P161 138 aaKnown RBP4.44□□□□□ -1.7
USP54-211ENST00000474929 TMEM18Q96B42 140 aa4.44□□□□□ -1.7
USP54-211ENST00000474929 TMEM191AQ9H0A3 160 aa4.44□□□□□ -1.7
USP54-211ENST00000474929 ST20Q9HBF5 79 aa4.44□□□□□ -1.7
USP54-211ENST00000474929 GAGE2DQ9UEU5 116 aa4.44□□□□□ -1.7
USP54-211ENST00000474929 IGKV2D-29A0A075B6S2 120 aaPredicted RBP4.43□□□□□ -1.7
USP54-211ENST00000474929 TGIF2-C20orf24A0A0A6YYL0 155 aa4.43□□□□□ -1.7
USP54-211ENST00000474929 IGKV2-29A2NJV5 120 aaPredicted RBP4.43□□□□□ -1.7
USP54-211ENST00000474929 PCP4L1A6NKN8 68 aa4.43□□□□□ -1.7
USP54-211ENST00000474929 I3L3M4 83 aa4.43□□□□□ -1.7
USP54-211ENST00000474929 ANAPC11Q9NYG5 84 aa4.43□□□□□ -1.7
USP54-211ENST00000474929 TMEM238LA0A1B0GVL6 79 aa4.42□□□□□ -1.7
USP54-211ENST00000474929 SPINK1P00995 79 aa4.42□□□□□ -1.7
USP54-211ENST00000474929 MRPL51Q4U2R6 128 aaKnown RBP4.42□□□□□ -1.7
USP54-211ENST00000474929 PYY3Q5JQD4 70 aa4.42□□□□□ -1.7
USP54-211ENST00000474929 FAM104BQ5XKR9 115 aa4.42□□□□□ -1.7
USP54-211ENST00000474929 MRAP2Q96G30 205 aa4.42□□□□□ -1.7
USP54-211ENST00000474929 MUC12Q9UKN1 5478 aa4.42□□□□□ -1.7
USP54-211ENST00000474929 TRBV6-5A0A0K0K1A5 114 aa4.41□□□□□ -1.7
USP54-211ENST00000474929 IFITM10A6NMD0 228 aa4.41□□□□□ -1.7
USP54-211ENST00000474929 VCYO14598 125 aa4.41□□□□□ -1.7
USP54-211ENST00000474929 CKS2P33552 79 aa4.41□□□□□ -1.7
USP54-211ENST00000474929 UBE2AP49459 152 aa4.41□□□□□ -1.7
USP54-211ENST00000474929 POLR2KP53803 58 aaKnown RBP4.41□□□□□ -1.7
USP54-211ENST00000474929 SMAGPQ0VAQ4 97 aa4.41□□□□□ -1.7
USP54-211ENST00000474929 PCOTHQ58A44 107 aa4.41□□□□□ -1.7
USP54-211ENST00000474929 HIST1H2BLQ99880 126 aa4.41□□□□□ -1.7
USP54-211ENST00000474929 GNB1LQ9BYB4 327 aa4.41□□□□□ -1.7
USP54-211ENST00000474929 TP73-AS1Q9UF72 201 aa4.41□□□□□ -1.7
USP54-211ENST00000474929 A0A1B0GW15 77 aa4.4□□□□□ -1.71
USP54-211ENST00000474929 NDUFC2-KCTD14E9PQ53 114 aa4.4□□□□□ -1.71
USP54-211ENST00000474929 FCER1GP30273 86 aa4.4□□□□□ -1.71
USP54-211ENST00000474929 RPS29P62273 56 aaKnown RBP4.4□□□□□ -1.71
USP54-211ENST00000474929 HBBP68871 147 aa4.4□□□□□ -1.71
USP54-211ENST00000474929 KRTAP7-1Q8IUC3 87 aa4.4□□□□□ -1.71
USP54-211ENST00000474929 LINC00469Q8N7U9 141 aa4.4□□□□□ -1.71
USP54-211ENST00000474929 NRACQ8N912 160 aa4.4□□□□□ -1.71
USP54-211ENST00000474929 TRBV30A0A0K0K1B3 111 aa4.39□□□□□ -1.71
USP54-211ENST00000474929 A0A1B0GXF2 115 aa4.39□□□□□ -1.71
USP54-211ENST00000474929 LINC00587B1AMM8 73 aa4.39□□□□□ -1.71
USP54-211ENST00000474929 D6R8Y8 96 aa4.39□□□□□ -1.71
USP54-211ENST00000474929 PPP1R17O96001 155 aa4.39□□□□□ -1.71
USP54-211ENST00000474929 FABP4P15090 132 aa4.39□□□□□ -1.71
USP54-211ENST00000474929 DDTP30046 118 aa4.39□□□□□ -1.71
USP54-211ENST00000474929 SUMO2P61956 95 aaKnown RBP4.39□□□□□ -1.71
USP54-211ENST00000474929 TMEM136Q6ZRR5 245 aa4.39□□□□□ -1.71
USP54-211ENST00000474929 TRAPPC1Q9Y5R8 145 aa4.39□□□□□ -1.71
USP54-211ENST00000474929 TRBV27A0A0K0K1C4 114 aa4.38□□□□□ -1.71
Retrieved 100 of 20,778 RNA–protein pairs in 10.8 ms