RNA–Protein interactions for RNA: ENST00000471702.2

NPHP3-ACAD11-201, Transcript of NPHP3-ACAD11 readthrough (NMD candidate), humanhuman

TSL 2 BASIC

Gene NPHP3-ACAD11, Length 7,784 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP3-ACAD11-201ENST00000471702 C1orf134Q5TEV5 83 aa9.74□□□□□ -0.85
NPHP3-ACAD11-201ENST00000471702 C9orf116Q5BN46 136 aaPredicted RBP9.73□□□□□ -0.85
NPHP3-ACAD11-201ENST00000471702 ODF3BA8MYP8 253 aa9.73□□□□□ -0.85
NPHP3-ACAD11-201ENST00000471702 REG3GQ6UW15 175 aa9.73□□□□□ -0.85
NPHP3-ACAD11-201ENST00000471702 SMIM11BQ8TCY0 68 aa9.73□□□□□ -0.85
NPHP3-ACAD11-201ENST00000471702 DEFB116Q30KQ4 102 aa9.72□□□□□ -0.85
NPHP3-ACAD11-201ENST00000471702 C6orf223Q8N319 242 aa9.72□□□□□ -0.85
NPHP3-ACAD11-201ENST00000471702 NDUFA7O95182 113 aa9.72□□□□□ -0.85
NPHP3-ACAD11-201ENST00000471702 ODF3Q96PU9 254 aa9.71□□□□□ -0.85
NPHP3-ACAD11-201ENST00000471702 IGLV8-61A0A075B6I0 122 aa9.71□□□□□ -0.85
NPHP3-ACAD11-201ENST00000471702 MAPKAPK5-AS1Q8N8E1 139 aa9.71□□□□□ -0.85
NPHP3-ACAD11-201ENST00000471702 LINC00959A0A1B0GUT2 108 aa9.71□□□□□ -0.86
NPHP3-ACAD11-201ENST00000471702 SPACA4Q8TDM5 124 aa9.71□□□□□ -0.86
NPHP3-ACAD11-201ENST00000471702 SPRY4Q9C004 299 aa9.7□□□□□ -0.86
NPHP3-ACAD11-201ENST00000471702 SOSTDC1Q6X4U4 206 aa9.7□□□□□ -0.86
NPHP3-ACAD11-201ENST00000471702 CYSRT1A8MQ03 144 aa9.7□□□□□ -0.86
NPHP3-ACAD11-201ENST00000471702 ZNF702PQ9H963 129 aa9.7□□□□□ -0.86
NPHP3-ACAD11-201ENST00000471702 PRR3P79522 188 aaKnown RBP9.69□□□□□ -0.86
NPHP3-ACAD11-201ENST00000471702 H0Y9P7 68 aa9.69□□□□□ -0.86
NPHP3-ACAD11-201ENST00000471702 ZNF73O43830 326 aaPredicted RBP9.69□□□□□ -0.86
NPHP3-ACAD11-201ENST00000471702 CRIP1P50238 77 aa9.69□□□□□ -0.86
NPHP3-ACAD11-201ENST00000471702 TMEM254Q8TBM7 123 aa9.69□□□□□ -0.86
NPHP3-ACAD11-201ENST00000471702 A0A1B0GU69 56 aa9.69□□□□□ -0.86
NPHP3-ACAD11-201ENST00000471702 CRIP2P52943 208 aaPredicted RBP9.68□□□□□ -0.86
NPHP3-ACAD11-201ENST00000471702 C1orf229Q6ZS94 237 aaPredicted RBP9.68□□□□□ -0.86
NPHP3-ACAD11-201ENST00000471702 PYGO1Q9Y3Y4 419 aa9.67□□□□□ -0.86
NPHP3-ACAD11-201ENST00000471702 CCDC179H3BU77 68 aa9.67□□□□□ -0.86
NPHP3-ACAD11-201ENST00000471702 UNQ6190/PRO20217Q6UXQ8 127 aa9.67□□□□□ -0.86
NPHP3-ACAD11-201ENST00000471702 U3KQK5 164 aa9.66□□□□□ -0.86
NPHP3-ACAD11-201ENST00000471702 MRPS12O15235 138 aaKnown RBP9.66□□□□□ -0.86
NPHP3-ACAD11-201ENST00000471702 PSMG3-AS1Q96PY0 264 aa9.66□□□□□ -0.86
NPHP3-ACAD11-201ENST00000471702 MRGPRG-AS1Q2M3A8 158 aa9.65□□□□□ -0.86
NPHP3-ACAD11-201ENST00000471702 SSBP3-AS1Q7Z2R9 100 aa9.65□□□□□ -0.86
NPHP3-ACAD11-201ENST00000471702 Q6ZTC4 211 aa9.65□□□□□ -0.86
NPHP3-ACAD11-201ENST00000471702 COX6A2Q02221 97 aa9.65□□□□□ -0.87
NPHP3-ACAD11-201ENST00000471702 CEP350Q5VT06 3117 aa9.64□□□□□ -0.87
NPHP3-ACAD11-201ENST00000471702 LINC00575Q6W349 94 aa9.64□□□□□ -0.87
NPHP3-ACAD11-201ENST00000471702 Q9BRP9 147 aa9.64□□□□□ -0.87
NPHP3-ACAD11-201ENST00000471702 EDN2P20800 178 aa9.64□□□□□ -0.87
NPHP3-ACAD11-201ENST00000471702 TSHBP01222 138 aa9.63□□□□□ -0.87
NPHP3-ACAD11-201ENST00000471702 EP400Q96L91 3159 aa9.63□□□□□ -0.87
NPHP3-ACAD11-201ENST00000471702 COL4A4P53420 1690 aaPredicted RBP9.62□□□□□ -0.87
NPHP3-ACAD11-201ENST00000471702 LINC00694P0DN24 101 aa9.62□□□□□ -0.87
NPHP3-ACAD11-201ENST00000471702 PCSK5Q92824 1860 aa9.62□□□□□ -0.87
NPHP3-ACAD11-201ENST00000471702 EPG5Q9HCE0 2579 aa9.62□□□□□ -0.87
NPHP3-ACAD11-201ENST00000471702 HCG22E2RYF7 251 aa9.62□□□□□ -0.87
NPHP3-ACAD11-201ENST00000471702 MBD6Q96DN6 1003 aa9.61□□□□□ -0.87
NPHP3-ACAD11-201ENST00000471702 PRR9Q5T870 116 aa9.61□□□□□ -0.87
NPHP3-ACAD11-201ENST00000471702 COX17Q14061 63 aa9.6□□□□□ -0.87
NPHP3-ACAD11-201ENST00000471702 KRTAP10-9P60411 292 aa9.6□□□□□ -0.87
NPHP3-ACAD11-201ENST00000471702 C11orf71Q6IPW1 123 aa9.59□□□□□ -0.87
NPHP3-ACAD11-201ENST00000471702 TRBV10-3A0A0K0K1G6 114 aa9.59□□□□□ -0.88
NPHP3-ACAD11-201ENST00000471702 CDSNQ15517 529 aa9.59□□□□□ -0.88
NPHP3-ACAD11-201ENST00000471702 ATP11AUNQ6ZP68 121 aa9.58□□□□□ -0.88
NPHP3-ACAD11-201ENST00000471702 BRWD1-AS2P59051 145 aa9.58□□□□□ -0.88
NPHP3-ACAD11-201ENST00000471702 APLNQ9ULZ1 77 aa9.58□□□□□ -0.88
NPHP3-ACAD11-201ENST00000471702 GAS8-AS1O95177 125 aa9.57□□□□□ -0.88
NPHP3-ACAD11-201ENST00000471702 KIAA0087Q14695 138 aa9.57□□□□□ -0.88
NPHP3-ACAD11-201ENST00000471702 TRBV7-7A0A0K0K1E9 115 aa9.57□□□□□ -0.88
NPHP3-ACAD11-201ENST00000471702 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP9.57□□□□□ -0.88
NPHP3-ACAD11-201ENST00000471702 LTBP2Q14767 1821 aa9.57□□□□□ -0.88
NPHP3-ACAD11-201ENST00000471702 NRACQ8N912 160 aa9.56□□□□□ -0.88
NPHP3-ACAD11-201ENST00000471702 A8MTW9 85 aa9.56□□□□□ -0.88
NPHP3-ACAD11-201ENST00000471702 C16orf90A8MZG2 172 aa9.56□□□□□ -0.88
NPHP3-ACAD11-201ENST00000471702 CDC42SE2Q9NRR3 84 aa9.56□□□□□ -0.88
NPHP3-ACAD11-201ENST00000471702 AVPP01185 164 aa9.56□□□□□ -0.88
NPHP3-ACAD11-201ENST00000471702 SMIM26A0A096LP01 95 aa9.55□□□□□ -0.88
NPHP3-ACAD11-201ENST00000471702 CRIPTQ9P021 101 aa9.55□□□□□ -0.88
NPHP3-ACAD11-201ENST00000471702 Q8IZM0 81 aa9.54□□□□□ -0.88
NPHP3-ACAD11-201ENST00000471702 NTM-AS1Q6ZSK4 140 aa9.54□□□□□ -0.88
NPHP3-ACAD11-201ENST00000471702 A0A087WSZ3 146 aa9.54□□□□□ -0.88
NPHP3-ACAD11-201ENST00000471702 CEP295Q9C0D2 2601 aa9.54□□□□□ -0.88
NPHP3-ACAD11-201ENST00000471702 Q9UF83 564 aa9.54□□□□□ -0.88
NPHP3-ACAD11-201ENST00000471702 TYMSOSQ8TAI1 123 aa9.54□□□□□ -0.88
NPHP3-ACAD11-201ENST00000471702 IGLV4-60A0A075B6I1 120 aa9.53□□□□□ -0.88
NPHP3-ACAD11-201ENST00000471702 Q6JHZ5 121 aa9.52□□□□□ -0.89
NPHP3-ACAD11-201ENST00000471702 Q6ZPA2 131 aa9.52□□□□□ -0.89
NPHP3-ACAD11-201ENST00000471702 C11orf21Q9P2W6 132 aa9.52□□□□□ -0.89
NPHP3-ACAD11-201ENST00000471702 MRPS36P82909 103 aaKnown RBP9.51□□□□□ -0.89
NPHP3-ACAD11-201ENST00000471702 LINC00574Q9H8X3 128 aa9.51□□□□□ -0.89
NPHP3-ACAD11-201ENST00000471702 TRAV7A0A075B6U4 112 aa9.51□□□□□ -0.89
NPHP3-ACAD11-201ENST00000471702 ATRQ13535 2644 aa9.5□□□□□ -0.89
NPHP3-ACAD11-201ENST00000471702 P0C879 139 aa9.5□□□□□ -0.89
NPHP3-ACAD11-201ENST00000471702 UTRNP46939 3433 aa9.5□□□□□ -0.89
NPHP3-ACAD11-201ENST00000471702 KLLNB2CW77 178 aa9.49□□□□□ -0.89
NPHP3-ACAD11-201ENST00000471702 Q8N814 137 aa9.49□□□□□ -0.89
NPHP3-ACAD11-201ENST00000471702 MOBPQ13875 183 aa9.49□□□□□ -0.89
NPHP3-ACAD11-201ENST00000471702 COL27A1Q8IZC6 1860 aaPredicted RBP9.49□□□□□ -0.89
NPHP3-ACAD11-201ENST00000471702 LINC00313P59037 77 aa9.49□□□□□ -0.89
NPHP3-ACAD11-201ENST00000471702 LINC01554Q52M75 96 aa9.49□□□□□ -0.89
NPHP3-ACAD11-201ENST00000471702 LUZP6Q538Z0 58 aa9.49□□□□□ -0.89
NPHP3-ACAD11-201ENST00000471702 A0A087WYN8 130 aa9.49□□□□□ -0.89
NPHP3-ACAD11-201ENST00000471702 ODF3L2Q3SX64 289 aa9.49□□□□□ -0.89
NPHP3-ACAD11-201ENST00000471702 C1orf64Q8NEQ6 169 aa9.48□□□□□ -0.89
NPHP3-ACAD11-201ENST00000471702 HECTD1Q9ULT8 2610 aa9.48□□□□□ -0.89
NPHP3-ACAD11-201ENST00000471702 A0A087WVE0 104 aa9.48□□□□□ -0.89
NPHP3-ACAD11-201ENST00000471702 CSNK1G2-AS1Q8NCQ2 148 aa9.48□□□□□ -0.89
NPHP3-ACAD11-201ENST00000471702 EGFEM1PQ0D2K5 195 aa9.47□□□□□ -0.89
NPHP3-ACAD11-201ENST00000471702 COX7CP15954 63 aa9.47□□□□□ -0.89
NPHP3-ACAD11-201ENST00000471702 IGLV1-40P01703 118 aa9.46□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 11.1 ms