RNA–Protein interactions for RNA: ENST00000465238.5

COL7A1-205, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 2

Gene COL7A1, Length 587 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-205ENST00000465238 TOMM7Q9P0U1 55 aa11.33□□□□□ -0.6
COL7A1-205ENST00000465238 LRP1Q07954 4544 aaKnown RBP11.33□□□□□ -0.6
COL7A1-205ENST00000465238 IGLV5-45A0A087WSX0 123 aa11.32□□□□□ -0.6
COL7A1-205ENST00000465238 H3BRM9 83 aa11.32□□□□□ -0.6
COL7A1-205ENST00000465238 NDUFA1O15239 70 aa11.32□□□□□ -0.6
COL7A1-205ENST00000465238 CHTOPQ9Y3Y2 248 aaKnown RBP11.32□□□□□ -0.6
COL7A1-205ENST00000465238 TRAV12-1A0A0B4J245 112 aa11.31□□□□□ -0.6
COL7A1-205ENST00000465238 FABP4P15090 132 aa11.31□□□□□ -0.6
COL7A1-205ENST00000465238 KIAA0087Q14695 138 aa11.31□□□□□ -0.6
COL7A1-205ENST00000465238 C6orf226Q5I0X4 101 aa11.31□□□□□ -0.6
COL7A1-205ENST00000465238 DPH3Q96FX2 82 aa11.31□□□□□ -0.6
COL7A1-205ENST00000465238 HSPB8Q9UJY1 196 aa11.31□□□□□ -0.6
COL7A1-205ENST00000465238 OXTP01178 125 aa11.3□□□□□ -0.6
COL7A1-205ENST00000465238 CKS1BP61024 79 aa11.29□□□□□ -0.6
COL7A1-205ENST00000465238 RNF151Q2KHN1 245 aa11.29□□□□□ -0.6
COL7A1-205ENST00000465238 UNQ6190/PRO20217Q6UXQ8 127 aa11.29□□□□□ -0.6
COL7A1-205ENST00000465238 Q8IZM0 81 aa11.29□□□□□ -0.6
COL7A1-205ENST00000465238 MRPL35Q9NZE8 188 aaKnown RBP11.29□□□□□ -0.6
COL7A1-205ENST00000465238 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP11.29□□□□□ -0.6
COL7A1-205ENST00000465238 FAT3Q8TDW7 4589 aa11.28□□□□□ -0.6
COL7A1-205ENST00000465238 LOC107984640A0A0U1RRK4 108 aa11.28□□□□□ -0.6
COL7A1-205ENST00000465238 SMIM1B2RUZ4 78 aa11.28□□□□□ -0.6
COL7A1-205ENST00000465238 H0Y8G0 127 aa11.28□□□□□ -0.6
COL7A1-205ENST00000465238 SPINK8P0C7L1 97 aa11.28□□□□□ -0.6
COL7A1-205ENST00000465238 IGKV2-24A0A0C4DH68 120 aa11.27□□□□□ -0.61
COL7A1-205ENST00000465238 C11orf86A6NJI1 115 aa11.27□□□□□ -0.61
COL7A1-205ENST00000465238 ZNF22P17026 224 aaPredicted RBP11.27□□□□□ -0.61
COL7A1-205ENST00000465238 RPL37AP61513 92 aaKnown RBP11.27□□□□□ -0.61
COL7A1-205ENST00000465238 C10orf25Q5T742 122 aa11.27□□□□□ -0.61
COL7A1-205ENST00000465238 SERTAD4-AS1Q5TG53 156 aa11.27□□□□□ -0.61
COL7A1-205ENST00000465238 C2orf82Q6UX34 121 aa11.27□□□□□ -0.61
COL7A1-205ENST00000465238 F8VRH5 84 aa11.26□□□□□ -0.61
COL7A1-205ENST00000465238 PANO1I0J062 215 aa11.26□□□□□ -0.61
COL7A1-205ENST00000465238 CHTF8P0CG12 524 aa11.26□□□□□ -0.61
COL7A1-205ENST00000465238 TMEM170BQ5T4T1 132 aa11.26□□□□□ -0.61
COL7A1-205ENST00000465238 COX7B2Q8TF08 81 aa11.26□□□□□ -0.61
COL7A1-205ENST00000465238 A0A096LNI7 61 aa11.25□□□□□ -0.61
COL7A1-205ENST00000465238 TRBV30A0A0K0K1B3 111 aa11.25□□□□□ -0.61
COL7A1-205ENST00000465238 CIRBPQ14011 172 aaKnown RBP11.25□□□□□ -0.61
COL7A1-205ENST00000465238 MAJINQ3KP22 176 aa11.25□□□□□ -0.61
COL7A1-205ENST00000465238 COA6Q5JTJ3 125 aaKnown RBP11.25□□□□□ -0.61
COL7A1-205ENST00000465238 LINC00474Q9P2X8 69 aa11.25□□□□□ -0.61
COL7A1-205ENST00000465238 C6orf48Q9UBA6 75 aa11.25□□□□□ -0.61
COL7A1-205ENST00000465238 PKHD1L1Q86WI1 4243 aa11.25□□□□□ -0.61
COL7A1-205ENST00000465238 GAGE2BQ13066 116 aa11.24□□□□□ -0.61
COL7A1-205ENST00000465238 SPACA4Q8TDM5 124 aa11.24□□□□□ -0.61
COL7A1-205ENST00000465238 MAP1LC3CQ9BXW4 147 aa11.24□□□□□ -0.61
COL7A1-205ENST00000465238 CXCL5P42830 114 aa11.23□□□□□ -0.61
COL7A1-205ENST00000465238 RPL18AQ02543 176 aaKnown RBP11.23□□□□□ -0.61
COL7A1-205ENST00000465238 ODF1Q14990 250 aa11.23□□□□□ -0.61
COL7A1-205ENST00000465238 A0A087WYN8 130 aa11.21□□□□□ -0.61
COL7A1-205ENST00000465238 IGLV5-39A0A0G2JS06 123 aa11.21□□□□□ -0.61
COL7A1-205ENST00000465238 PTTG1IPP53801 180 aa11.21□□□□□ -0.61
COL7A1-205ENST00000465238 HMCN2Q8NDA2 5059 aa11.2□□□□□ -0.62
COL7A1-205ENST00000465238 STPG4Q8N801 248 aa11.2□□□□□ -0.62
COL7A1-205ENST00000465238 TLX1NBP0CAT3 122 aa11.19□□□□□ -0.62
COL7A1-205ENST00000465238 TMEM223A0PJW6 202 aa11.18□□□□□ -0.62
COL7A1-205ENST00000465238 PLNP26678 52 aa11.18□□□□□ -0.62
COL7A1-205ENST00000465238 HNRNPA3P51991 378 aaKnown RBP11.18□□□□□ -0.62
COL7A1-205ENST00000465238 C9orf116Q5BN46 136 aaPredicted RBP11.18□□□□□ -0.62
COL7A1-205ENST00000465238 PLAC8Q9NZF1 115 aa11.18□□□□□ -0.62
COL7A1-205ENST00000465238 NDUFC2-KCTD14E9PQ53 114 aa11.17□□□□□ -0.62
COL7A1-205ENST00000465238 DPM2O94777 84 aa11.17□□□□□ -0.62
COL7A1-205ENST00000465238 Q6ZRP5 223 aa11.17□□□□□ -0.62
COL7A1-205ENST00000465238 PMCHL2Q9BQD1 86 aa11.17□□□□□ -0.62
COL7A1-205ENST00000465238 SYS1-DBNDD2H3BUS1 97 aa11.16□□□□□ -0.62
COL7A1-205ENST00000465238 GAGE2EQ4V326 116 aa11.16□□□□□ -0.62
COL7A1-205ENST00000465238 GAGE2DQ9UEU5 116 aa11.16□□□□□ -0.62
COL7A1-205ENST00000465238 IGKCP01834 107 aa11.15□□□□□ -0.62
COL7A1-205ENST00000465238 S100A6P06703 90 aa11.14□□□□□ -0.63
COL7A1-205ENST00000465238 SFTA2Q6UW10 78 aa11.13□□□□□ -0.63
COL7A1-205ENST00000465238 PET117Q6UWS5 81 aa11.13□□□□□ -0.63
COL7A1-205ENST00000465238 PLA2G2DQ9UNK4 145 aa11.13□□□□□ -0.63
COL7A1-205ENST00000465238 KRTDAPP60985 99 aa11.12□□□□□ -0.63
COL7A1-205ENST00000465238 C3orf79P0CE67 100 aa11.11□□□□□ -0.63
COL7A1-205ENST00000465238 HERVK_113P61574 105 aa11.11□□□□□ -0.63
COL7A1-205ENST00000465238 A0A1W2PNN7 141 aa11.1□□□□□ -0.63
COL7A1-205ENST00000465238 S100A2P29034 98 aa11.1□□□□□ -0.63
COL7A1-205ENST00000465238 C7orf33Q8WU49 177 aa11.1□□□□□ -0.63
COL7A1-205ENST00000465238 LINC01545Q5VT33 79 aa11.09□□□□□ -0.63
COL7A1-205ENST00000465238 ZNF625Q96I27 306 aaPredicted RBP11.09□□□□□ -0.63
COL7A1-205ENST00000465238 LEPROTO15243 131 aa11.08□□□□□ -0.64
COL7A1-205ENST00000465238 PFN2P35080 140 aa11.08□□□□□ -0.64
COL7A1-205ENST00000465238 HIST3H2BBQ8N257 126 aa11.08□□□□□ -0.64
COL7A1-205ENST00000465238 PLEKHB2Q96CS7 222 aa11.08□□□□□ -0.64
COL7A1-205ENST00000465238 ERG28Q9UKR5 140 aa11.08□□□□□ -0.64
COL7A1-205ENST00000465238 C9orf129Q5T035 196 aaKnown RBP11.07□□□□□ -0.64
COL7A1-205ENST00000465238 XAGE1AQ9HD64 81 aa11.07□□□□□ -0.64
COL7A1-205ENST00000465238 FAM168BA1KXE4 195 aa11.06□□□□□ -0.64
COL7A1-205ENST00000465238 C20orf202A1L168 122 aa11.06□□□□□ -0.64
COL7A1-205ENST00000465238 MT1HL1P0DM35 61 aa11.06□□□□□ -0.64
COL7A1-205ENST00000465238 COX17Q14061 63 aa11.06□□□□□ -0.64
COL7A1-205ENST00000465238 FAM19A5Q7Z5A7 132 aaPredicted RBP11.06□□□□□ -0.64
COL7A1-205ENST00000465238 UBR4Q5T4S7 5183 aa11.06□□□□□ -0.64
COL7A1-205ENST00000465238 NDUFA12Q9UI09 145 aa11.05□□□□□ -0.64
COL7A1-205ENST00000465238 MYMXA0A1B0GTQ4 84 aa11.04□□□□□ -0.64
COL7A1-205ENST00000465238 J3QQQ9 107 aa11.04□□□□□ -0.64
COL7A1-205ENST00000465238 LGALS3P17931 250 aaKnown RBP11.04□□□□□ -0.64
COL7A1-205ENST00000465238 SNRPEP62304 92 aaKnown RBP11.04□□□□□ -0.64
COL7A1-205ENST00000465238 HERV-K104P63124 156 aa11.04□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 118.3 ms