RNA–Protein interactions for RNA: ENST00000461743.1

VPS52-213, Transcript of VPS52, GARP complex subunit, humanhuman

TSL 3

Gene VPS52, Length 547 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS52-213ENST00000461743 VPS13BQ7Z7G8 4022 aa7.72□□□□□ -1.17
VPS52-213ENST00000461743 IGHV1-58A0A0C4DH39 117 aa7.71□□□□□ -1.18
VPS52-213ENST00000461743 LINC01546A6NGU7 62 aa7.71□□□□□ -1.18
VPS52-213ENST00000461743 FABP2P12104 132 aa7.71□□□□□ -1.18
VPS52-213ENST00000461743 C2orf66Q6UXQ4 117 aa7.71□□□□□ -1.18
VPS52-213ENST00000461743 TMEM141Q96I45 108 aa7.71□□□□□ -1.18
VPS52-213ENST00000461743 IGLV4-3A0A075B6K6 122 aa7.7□□□□□ -1.18
VPS52-213ENST00000461743 A0A1B0GV72 72 aa7.7□□□□□ -1.18
VPS52-213ENST00000461743 XGP55808 180 aa7.7□□□□□ -1.18
VPS52-213ENST00000461743 PAPPA-AS1Q5QFB9 102 aa7.7□□□□□ -1.18
VPS52-213ENST00000461743 C9orf163Q8N9P6 203 aa7.7□□□□□ -1.18
VPS52-213ENST00000461743 FAM104AQ969W3 186 aa7.7□□□□□ -1.18
VPS52-213ENST00000461743 HIGD1BQ9P298 99 aa7.7□□□□□ -1.18
VPS52-213ENST00000461743 TRAV13-1A0A0B4J241 112 aa7.69□□□□□ -1.18
VPS52-213ENST00000461743 J3QR89 54 aa7.69□□□□□ -1.18
VPS52-213ENST00000461743 COX7A2LO14548 114 aa7.69□□□□□ -1.18
VPS52-213ENST00000461743 RNASE13Q5GAN3 156 aaKnown RBP7.69□□□□□ -1.18
VPS52-213ENST00000461743 Q8N1X5 172 aa7.69□□□□□ -1.18
VPS52-213ENST00000461743 PRSS3P2Q8NHM4 247 aa7.69□□□□□ -1.18
VPS52-213ENST00000461743 TIMM17AQ99595 171 aa7.69□□□□□ -1.18
VPS52-213ENST00000461743 PKIGQ9Y2B9 76 aa7.69□□□□□ -1.18
VPS52-213ENST00000461743 APOMO95445 188 aa7.68□□□□□ -1.18
VPS52-213ENST00000461743 TOMM6Q96B49 74 aa7.68□□□□□ -1.18
VPS52-213ENST00000461743 SIGMAR1Q99720 223 aa7.68□□□□□ -1.18
VPS52-213ENST00000461743 IGIPA6NJ69 53 aa7.67□□□□□ -1.18
VPS52-213ENST00000461743 H0Y8G0 127 aa7.67□□□□□ -1.18
VPS52-213ENST00000461743 HBDP02042 147 aa7.67□□□□□ -1.18
VPS52-213ENST00000461743 SMIM13P0DJ93 91 aa7.67□□□□□ -1.18
VPS52-213ENST00000461743 MALP21145 153 aa7.67□□□□□ -1.18
VPS52-213ENST00000461743 AMELXQ99217 191 aa7.67□□□□□ -1.18
VPS52-213ENST00000461743 FAT1Q14517 4588 aa7.66□□□□□ -1.18
VPS52-213ENST00000461743 IGHV3-64A0A075B6Q5 118 aa7.66□□□□□ -1.18
VPS52-213ENST00000461743 A0A096LNJ9 63 aa7.66□□□□□ -1.18
VPS52-213ENST00000461743 HIGD2BQ4VC39 106 aa7.66□□□□□ -1.18
VPS52-213ENST00000461743 OPRPNQ99935 248 aaPredicted RBP7.66□□□□□ -1.18
VPS52-213ENST00000461743 IGHV3OR16-9A0A0B4J2B5 98 aa7.65□□□□□ -1.18
VPS52-213ENST00000461743 ZNF561-AS1K7EIQ3 104 aa7.65□□□□□ -1.18
VPS52-213ENST00000461743 LINC01620Q4KN68 170 aa7.65□□□□□ -1.18
VPS52-213ENST00000461743 FAM19A3Q7Z5A8 133 aa7.65□□□□□ -1.18
VPS52-213ENST00000461743 CHAC1Q9BUX1 264 aa7.65□□□□□ -1.18
VPS52-213ENST00000461743 VCX2Q9H322 139 aa7.65□□□□□ -1.18
VPS52-213ENST00000461743 FAM30AQ9NZY2 134 aa7.65□□□□□ -1.18
VPS52-213ENST00000461743 F8WDY8 70 aa7.64□□□□□ -1.19
VPS52-213ENST00000461743 SLPIP03973 132 aa7.64□□□□□ -1.19
VPS52-213ENST00000461743 UBE2D1P51668 147 aa7.64□□□□□ -1.19
VPS52-213ENST00000461743 CIRBPQ14011 172 aaKnown RBP7.64□□□□□ -1.19
VPS52-213ENST00000461743 LINC01561Q8N1V8 128 aa7.64□□□□□ -1.19
VPS52-213ENST00000461743 IFI27L1Q96BM0 104 aa7.64□□□□□ -1.19
VPS52-213ENST00000461743 C2orf48Q96LS8 159 aa7.64□□□□□ -1.19
VPS52-213ENST00000461743 CARD19Q96LW7 228 aa7.64□□□□□ -1.19
VPS52-213ENST00000461743 F8W1H4 67 aa7.63□□□□□ -1.19
VPS52-213ENST00000461743 RPL24P83731 157 aaKnown RBP7.63□□□□□ -1.19
VPS52-213ENST00000461743 TAL2Q16559 108 aa7.63□□□□□ -1.19
VPS52-213ENST00000461743 LINC00242Q5T6M2 205 aa7.63□□□□□ -1.19
VPS52-213ENST00000461743 SDIM1Q6ZPB5 146 aa7.63□□□□□ -1.19
VPS52-213ENST00000461743 SCXQ7RTU7 201 aa7.63□□□□□ -1.19
VPS52-213ENST00000461743 SCGB3A1Q96QR1 104 aa7.63□□□□□ -1.19
VPS52-213ENST00000461743 SPANXB1Q9NS25 103 aaPredicted RBP7.63□□□□□ -1.19
VPS52-213ENST00000461743 A0A087WZ39 114 aa7.62□□□□□ -1.19
VPS52-213ENST00000461743 EPM2AB3EWF7 344 aa7.62□□□□□ -1.19
VPS52-213ENST00000461743 HERVK_113P63121 156 aa7.62□□□□□ -1.19
VPS52-213ENST00000461743 C5orf38Q86SI9 138 aa7.62□□□□□ -1.19
VPS52-213ENST00000461743 MTURNQ8N3F0 131 aa7.62□□□□□ -1.19
VPS52-213ENST00000461743 RAB37Q96AX2 223 aa7.62□□□□□ -1.19
VPS52-213ENST00000461743 ABCA13Q86UQ4 5058 aa7.62□□□□□ -1.19
VPS52-213ENST00000461743 IGLV4-69A0A075B6H9 119 aa7.61□□□□□ -1.19
VPS52-213ENST00000461743 E9PLD3 99 aa7.61□□□□□ -1.19
VPS52-213ENST00000461743 NMUP48645 174 aa7.61□□□□□ -1.19
VPS52-213ENST00000461743 SPAG11BQ08648 103 aa7.61□□□□□ -1.19
VPS52-213ENST00000461743 SYCNQ0VAF6 134 aa7.61□□□□□ -1.19
VPS52-213ENST00000461743 Q5VSD8 79 aa7.61□□□□□ -1.19
VPS52-213ENST00000461743 NAA38Q9BRA0 125 aaKnown RBP7.61□□□□□ -1.19
VPS52-213ENST00000461743 PCLOQ9Y6V0 5065 aa7.6□□□□□ -1.19
VPS52-213ENST00000461743 FAM229AH3BQW9 127 aa7.6□□□□□ -1.19
VPS52-213ENST00000461743 ATP5LO75964 103 aa7.6□□□□□ -1.19
VPS52-213ENST00000461743 FXYD2P54710 66 aa7.6□□□□□ -1.19
VPS52-213ENST00000461743 PCP2Q8IVA1 136 aa7.6□□□□□ -1.19
VPS52-213ENST00000461743 CEND1Q8N111 149 aa7.6□□□□□ -1.19
VPS52-213ENST00000461743 CIRBP-AS1Q8TBR5 109 aa7.6□□□□□ -1.19
VPS52-213ENST00000461743 SPACA4Q8TDM5 124 aa7.6□□□□□ -1.19
VPS52-213ENST00000461743 CAMK2N2Q96S95 79 aa7.6□□□□□ -1.19
VPS52-213ENST00000461743 LINC00474Q9P2X8 69 aa7.6□□□□□ -1.19
VPS52-213ENST00000461743 SRRM2Q9UQ35 2752 aaKnown RBP7.6□□□□□ -1.19
VPS52-213ENST00000461743 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP7.59□□□□□ -1.19
VPS52-213ENST00000461743 HAMPP81172 84 aa7.59□□□□□ -1.19
VPS52-213ENST00000461743 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP7.59□□□□□ -1.19
VPS52-213ENST00000461743 NDUFA1O15239 70 aa7.58□□□□□ -1.2
VPS52-213ENST00000461743 COX6A2Q02221 97 aa7.58□□□□□ -1.2
VPS52-213ENST00000461743 ODF1Q14990 250 aa7.58□□□□□ -1.2
VPS52-213ENST00000461743 PMVKQ15126 192 aa7.58□□□□□ -1.2
VPS52-213ENST00000461743 LINC00528Q8N1L1 170 aa7.58□□□□□ -1.2
VPS52-213ENST00000461743 KRTAP17-1Q9BYP8 105 aa7.58□□□□□ -1.2
VPS52-213ENST00000461743 GEMIN7Q9H840 131 aaKnown RBP7.58□□□□□ -1.2
VPS52-213ENST00000461743 MRPL35Q9NZE8 188 aaKnown RBP7.58□□□□□ -1.2
VPS52-213ENST00000461743 IGLV5-45A0A087WSX0 123 aa7.57□□□□□ -1.2
VPS52-213ENST00000461743 LOC107984640A0A0U1RRK4 108 aa7.57□□□□□ -1.2
VPS52-213ENST00000461743 TINCRA0A1B0GVN0 87 aa7.57□□□□□ -1.2
VPS52-213ENST00000461743 A0A1B0GWB2 263 aa7.57□□□□□ -1.2
VPS52-213ENST00000461743 DPM2O94777 84 aa7.57□□□□□ -1.2
VPS52-213ENST00000461743 IGKCP01834 107 aa7.57□□□□□ -1.2
Retrieved 100 of 20,778 RNA–protein pairs in 77.2 ms