RNA–Protein interactions for RNA: ENST00000459667.1

VARS-218, Transcript of valyl-tRNA synthetase, humanhuman

TSL 3

Gene VARS, Length 793 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VARS-218ENST00000459667 C7orf33Q8WU49 177 aa13.06□□□□□ -0.32
VARS-218ENST00000459667 TOMM7Q9P0U1 55 aa13.06□□□□□ -0.32
VARS-218ENST00000459667 IGLV5-45A0A087WSX0 123 aa13.05□□□□□ -0.32
VARS-218ENST00000459667 H3BRM9 83 aa13.05□□□□□ -0.32
VARS-218ENST00000459667 C6orf48Q9UBA6 75 aa13.05□□□□□ -0.32
VARS-218ENST00000459667 CKS1BP61024 79 aa13.04□□□□□ -0.32
VARS-218ENST00000459667 C6orf226Q5I0X4 101 aa13.04□□□□□ -0.32
VARS-218ENST00000459667 Q8IZM0 81 aa13.04□□□□□ -0.32
VARS-218ENST00000459667 IGLC3P0DOY3 106 aa13.03□□□□□ -0.32
VARS-218ENST00000459667 C2orf82Q6UX34 121 aa13.03□□□□□ -0.32
VARS-218ENST00000459667 IFI27L1Q96BM0 104 aa13.03□□□□□ -0.32
VARS-218ENST00000459667 SERF1AO75920 110 aa13.02□□□□□ -0.33
VARS-218ENST00000459667 TRBV30A0A0K0K1B3 111 aa13.01□□□□□ -0.33
VARS-218ENST00000459667 HNRNPA3P51991 378 aaKnown RBP13.01□□□□□ -0.33
VARS-218ENST00000459667 FAM19A2Q8N3H0 131 aa13.01□□□□□ -0.33
VARS-218ENST00000459667 SMIM1B2RUZ4 78 aa13□□□□□ -0.33
VARS-218ENST00000459667 TLX1NBP0CAT3 122 aa13□□□□□ -0.33
VARS-218ENST00000459667 CXCL5P42830 114 aa13□□□□□ -0.33
VARS-218ENST00000459667 S100A1P23297 94 aa12.99□□□□□ -0.33
VARS-218ENST00000459667 Q6ZRP5 223 aa12.99□□□□□ -0.33
VARS-218ENST00000459667 A0A1W2PNN7 141 aa12.98□□□□□ -0.33
VARS-218ENST00000459667 SPINK8P0C7L1 97 aa12.98□□□□□ -0.33
VARS-218ENST00000459667 C9orf116Q5BN46 136 aaPredicted RBP12.98□□□□□ -0.33
VARS-218ENST00000459667 CHTOPQ9Y3Y2 248 aaKnown RBP12.98□□□□□ -0.33
VARS-218ENST00000459667 DMBT1Q9UGM3 2413 aaPredicted RBP12.97□□□□□ -0.33
VARS-218ENST00000459667 PKHD1L1Q86WI1 4243 aa12.97□□□□□ -0.33
VARS-218ENST00000459667 TRAV12-1A0A0B4J245 112 aa12.97□□□□□ -0.33
VARS-218ENST00000459667 LEPROTL1O95214 131 aa12.97□□□□□ -0.33
VARS-218ENST00000459667 COX7B2Q8TF08 81 aa12.97□□□□□ -0.33
VARS-218ENST00000459667 ZNF22P17026 224 aaPredicted RBP12.96□□□□□ -0.33
VARS-218ENST00000459667 LINC00310P59036 64 aa12.96□□□□□ -0.33
VARS-218ENST00000459667 GAGE2EQ4V326 116 aa12.96□□□□□ -0.33
VARS-218ENST00000459667 GAGE2DQ9UEU5 116 aa12.96□□□□□ -0.33
VARS-218ENST00000459667 HSPB8Q9UJY1 196 aa12.96□□□□□ -0.33
VARS-218ENST00000459667 KRTAP29-1A8MX34 341 aaPredicted RBP12.95□□□□□ -0.34
VARS-218ENST00000459667 F8VRH5 84 aa12.95□□□□□ -0.34
VARS-218ENST00000459667 J3QL48 77 aa12.95□□□□□ -0.34
VARS-218ENST00000459667 PRR3P79522 188 aaKnown RBP12.95□□□□□ -0.34
VARS-218ENST00000459667 TMEM170BQ5T4T1 132 aa12.95□□□□□ -0.34
VARS-218ENST00000459667 C11orf86A6NJI1 115 aa12.93□□□□□ -0.34
VARS-218ENST00000459667 NDUFC2-KCTD14E9PQ53 114 aa12.93□□□□□ -0.34
VARS-218ENST00000459667 HIST1H2BKO60814 126 aa12.93□□□□□ -0.34
VARS-218ENST00000459667 HIST1H2BJP06899 126 aa12.93□□□□□ -0.34
VARS-218ENST00000459667 HIST1H2BOP23527 126 aa12.93□□□□□ -0.34
VARS-218ENST00000459667 HIST1H2BBP33778 126 aa12.93□□□□□ -0.34
VARS-218ENST00000459667 HIST1H2BDP58876 126 aa12.93□□□□□ -0.34
VARS-218ENST00000459667 HIST1H2BCP62807 126 aa12.93□□□□□ -0.34
VARS-218ENST00000459667 HIST2H2BEQ16778 126 aa12.93□□□□□ -0.34
VARS-218ENST00000459667 HIST2H2BFQ5QNW6 126 aaPredicted RBP12.93□□□□□ -0.34
VARS-218ENST00000459667 HIST1H2BHQ93079 126 aa12.93□□□□□ -0.34
VARS-218ENST00000459667 HIST1H2BNQ99877 126 aa12.93□□□□□ -0.34
VARS-218ENST00000459667 HIST1H2BMQ99879 126 aa12.93□□□□□ -0.34
VARS-218ENST00000459667 ATP6V1G1O75348 118 aa12.92□□□□□ -0.34
VARS-218ENST00000459667 NUPR1O60356 82 aa12.91□□□□□ -0.34
VARS-218ENST00000459667 FABP4P15090 132 aa12.91□□□□□ -0.34
VARS-218ENST00000459667 IGLV5-39A0A0G2JS06 123 aa12.9□□□□□ -0.34
VARS-218ENST00000459667 FAM168BA1KXE4 195 aa12.9□□□□□ -0.34
VARS-218ENST00000459667 H0Y8G0 127 aa12.9□□□□□ -0.34
VARS-218ENST00000459667 OXTP01178 125 aa12.89□□□□□ -0.35
VARS-218ENST00000459667 PHF5AQ7RTV0 110 aaKnown RBP12.89□□□□□ -0.35
VARS-218ENST00000459667 FAM19A5Q7Z5A7 132 aaPredicted RBP12.89□□□□□ -0.35
VARS-218ENST00000459667 HERC1Q15751 4861 aa12.88□□□□□ -0.35
VARS-218ENST00000459667 LRP1Q07954 4544 aaKnown RBP12.87□□□□□ -0.35
VARS-218ENST00000459667 C9orf129Q5T035 196 aaKnown RBP12.87□□□□□ -0.35
VARS-218ENST00000459667 FAT3Q8TDW7 4589 aa12.87□□□□□ -0.35
VARS-218ENST00000459667 ODF1Q14990 250 aa12.86□□□□□ -0.35
VARS-218ENST00000459667 SFTA2Q6UW10 78 aa12.86□□□□□ -0.35
VARS-218ENST00000459667 MAP1LC3CQ9BXW4 147 aa12.86□□□□□ -0.35
VARS-218ENST00000459667 TMEM223A0PJW6 202 aa12.84□□□□□ -0.35
VARS-218ENST00000459667 PLNP26678 52 aa12.84□□□□□ -0.35
VARS-218ENST00000459667 KRTAP7-1Q8IUC3 87 aa12.83□□□□□ -0.36
VARS-218ENST00000459667 PSORS1C2Q9UIG4 136 aa12.83□□□□□ -0.36
VARS-218ENST00000459667 M0QXV9 152 aa12.82□□□□□ -0.36
VARS-218ENST00000459667 XAGE1AQ9HD64 81 aa12.82□□□□□ -0.36
VARS-218ENST00000459667 DPM2O94777 84 aa12.8□□□□□ -0.36
VARS-218ENST00000459667 COA6Q5JTJ3 125 aaKnown RBP12.8□□□□□ -0.36
VARS-218ENST00000459667 SPINK6Q6UWN8 80 aa12.79□□□□□ -0.36
VARS-218ENST00000459667 IGKCP01834 107 aa12.78□□□□□ -0.36
VARS-218ENST00000459667 HERVK_113P61574 105 aa12.78□□□□□ -0.36
VARS-218ENST00000459667 C1orf137Q5JT78 98 aa12.78□□□□□ -0.36
VARS-218ENST00000459667 SERTAD4-AS1Q5TG53 156 aa12.78□□□□□ -0.36
VARS-218ENST00000459667 UBE2BP63146 152 aa12.77□□□□□ -0.37
VARS-218ENST00000459667 COX17Q14061 63 aa12.77□□□□□ -0.37
VARS-218ENST00000459667 KRTAP11-1Q8IUC1 163 aa12.77□□□□□ -0.37
VARS-218ENST00000459667 ERG28Q9UKR5 140 aa12.77□□□□□ -0.37
VARS-218ENST00000459667 PFN2P35080 140 aa12.76□□□□□ -0.37
VARS-218ENST00000459667 SRSF9Q13242 221 aaKnown RBP eCLIP12.76□□□□□ -0.37
VARS-218ENST00000459667 SYS1-DBNDD2H3BUS1 97 aa12.75□□□□□ -0.37
VARS-218ENST00000459667 ZNF625Q96I27 306 aaPredicted RBP12.75□□□□□ -0.37
VARS-218ENST00000459667 PMCHL2Q9BQD1 86 aa12.75□□□□□ -0.37
VARS-218ENST00000459667 PLEKHB2Q96CS7 222 aa12.73□□□□□ -0.37
VARS-218ENST00000459667 C22orf24Q9Y442 160 aa12.73□□□□□ -0.37
VARS-218ENST00000459667 HERV-K104P63124 156 aa12.72□□□□□ -0.37
VARS-218ENST00000459667 PET117Q6UWS5 81 aa12.72□□□□□ -0.37
VARS-218ENST00000459667 LEPROTO15243 131 aa12.71□□□□□ -0.37
VARS-218ENST00000459667 IGLV7-43P04211 117 aa12.71□□□□□ -0.37
VARS-218ENST00000459667 MT1HL1P0DM35 61 aa12.71□□□□□ -0.37
VARS-218ENST00000459667 LBHQ53QV2 105 aaPredicted RBP12.71□□□□□ -0.37
VARS-218ENST00000459667 REG3GQ6UW15 175 aa12.71□□□□□ -0.37
VARS-218ENST00000459667 NDUFA12Q9UI09 145 aa12.71□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 79.2 ms