RNA–Protein interactions for RNA: ENST00000414174.1

SF3B1-203, Transcript of splicing factor 3b subunit 1, humanhuman

TSL 4

Gene SF3B1, Length 593 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-203ENST00000414174 INTS1Q8N201 2190 aaKnown RBP2.2□□□□□ -2.06
SF3B1-203ENST00000414174 MALRD1Q5VYJ5 2156 aa2.19□□□□□ -2.06
SF3B1-203ENST00000414174 IGKV3OR2-268A0A0C4DH90 116 aa2.19□□□□□ -2.06
SF3B1-203ENST00000414174 A0A1W2PNU3 283 aaPredicted RBP2.19□□□□□ -2.06
SF3B1-203ENST00000414174 H0YGX0 51 aa2.19□□□□□ -2.06
SF3B1-203ENST00000414174 ZNF861PO60384 105 aa2.19□□□□□ -2.06
SF3B1-203ENST00000414174 FREM3P0C091 2139 aa2.19□□□□□ -2.06
SF3B1-203ENST00000414174 SPTBP11277 2137 aa2.19□□□□□ -2.06
SF3B1-203ENST00000414174 PI4KAP42356 2102 aa2.19□□□□□ -2.06
SF3B1-203ENST00000414174 MRGPRG-AS1Q2M3A8 158 aa2.19□□□□□ -2.06
SF3B1-203ENST00000414174 ZNF625Q96I27 306 aaPredicted RBP2.19□□□□□ -2.06
SF3B1-203ENST00000414174 WFDC10AQ9H1F0 79 aa2.19□□□□□ -2.06
SF3B1-203ENST00000414174 KLK9Q9UKQ9 250 aa2.19□□□□□ -2.06
SF3B1-203ENST00000414174 TNRC6BQ9UPQ9 1833 aaKnown RBP2.19□□□□□ -2.06
SF3B1-203ENST00000414174 LOC110117498A0A087WWA1 95 aa2.18□□□□□ -2.06
SF3B1-203ENST00000414174 DEFB116Q30KQ4 102 aa2.18□□□□□ -2.06
SF3B1-203ENST00000414174 C4orf3Q8WVX3 66 aa2.18□□□□□ -2.06
SF3B1-203ENST00000414174 DEFB132Q7Z7B7 95 aa2.17□□□□□ -2.06
SF3B1-203ENST00000414174 PATE1Q8WXA2 126 aa2.17□□□□□ -2.06
SF3B1-203ENST00000414174 GAFA1Q96PS6 74 aa2.17□□□□□ -2.06
SF3B1-203ENST00000414174 PLXNB2O15031 1838 aa2.17□□□□□ -2.06
SF3B1-203ENST00000414174 KIAA0100Q14667 2235 aaKnown RBP2.16□□□□□ -2.06
SF3B1-203ENST00000414174 TRGV4A0A0C4DH28 118 aa2.16□□□□□ -2.06
SF3B1-203ENST00000414174 LINC00959A0A1B0GUT2 108 aa2.16□□□□□ -2.06
SF3B1-203ENST00000414174 NDUFA4O00483 81 aa2.16□□□□□ -2.06
SF3B1-203ENST00000414174 TET1Q8NFU7 2136 aa2.16□□□□□ -2.06
SF3B1-203ENST00000414174 PRO2289Q9P1D8 64 aa2.16□□□□□ -2.06
SF3B1-203ENST00000414174 PSORS1C2Q9UIG4 136 aa2.16□□□□□ -2.06
SF3B1-203ENST00000414174 DIDO1Q9BTC0 2240 aaKnown RBP2.15□□□□□ -2.06
SF3B1-203ENST00000414174 SDK2Q58EX2 2172 aa2.15□□□□□ -2.07
SF3B1-203ENST00000414174 A0A087WTM6 91 aa2.15□□□□□ -2.07
SF3B1-203ENST00000414174 FAM168BA1KXE4 195 aa2.15□□□□□ -2.07
SF3B1-203ENST00000414174 IGKV3-15P01624 115 aa2.15□□□□□ -2.07
SF3B1-203ENST00000414174 IGLV3-1P01715 115 aa2.15□□□□□ -2.07
SF3B1-203ENST00000414174 RNASE3P12724 160 aaKnown RBP2.15□□□□□ -2.07
SF3B1-203ENST00000414174 TFF3Q07654 80 aa2.15□□□□□ -2.07
SF3B1-203ENST00000414174 KCNQ1DNQ9H478 68 aa2.15□□□□□ -2.07
SF3B1-203ENST00000414174 ZGRF1Q86YA3 2104 aa2.15□□□□□ -2.07
SF3B1-203ENST00000414174 IGLV4-69A0A075B6H9 119 aa2.14□□□□□ -2.07
SF3B1-203ENST00000414174 KRTAP10-3P60369 221 aa2.14□□□□□ -2.07
SF3B1-203ENST00000414174 DEFB112Q30KQ8 113 aa2.14□□□□□ -2.07
SF3B1-203ENST00000414174 SPINK14Q6IE38 97 aa2.14□□□□□ -2.07
SF3B1-203ENST00000414174 COA5Q86WW8 74 aa2.14□□□□□ -2.07
SF3B1-203ENST00000414174 ARHGAP5-AS1Q96IT6 56 aa2.14□□□□□ -2.07
SF3B1-203ENST00000414174 CNFNQ9BYD5 112 aa2.14□□□□□ -2.07
SF3B1-203ENST00000414174 COL5A1P20908 1838 aaPredicted RBP2.14□□□□□ -2.07
SF3B1-203ENST00000414174 CR1P17927 2039 aa2.13□□□□□ -2.07
SF3B1-203ENST00000414174 MDC1Q14676 2089 aaKnown RBP2.13□□□□□ -2.07
SF3B1-203ENST00000414174 CABIN1Q9Y6J0 2220 aa2.13□□□□□ -2.07
SF3B1-203ENST00000414174 ETDCA0A1B0GVM5 59 aa2.13□□□□□ -2.07
SF3B1-203ENST00000414174 A0A1B0GVY2 172 aa2.13□□□□□ -2.07
SF3B1-203ENST00000414174 CPSF4LA6NMK7 179 aaKnown RBP2.13□□□□□ -2.07
SF3B1-203ENST00000414174 IAPPP10997 89 aa2.13□□□□□ -2.07
SF3B1-203ENST00000414174 HAMPP81172 84 aa2.13□□□□□ -2.07
SF3B1-203ENST00000414174 LINC01590Q5TEZ4 76 aa2.13□□□□□ -2.07
SF3B1-203ENST00000414174 TYMSOSQ8TAI1 123 aa2.13□□□□□ -2.07
SF3B1-203ENST00000414174 LINC00472Q9H8W2 130 aa2.13□□□□□ -2.07
SF3B1-203ENST00000414174 MED12Q93074 2177 aa2.13□□□□□ -2.07
SF3B1-203ENST00000414174 PRRC2BQ5JSZ5 2229 aaKnown RBP2.13□□□□□ -2.07
SF3B1-203ENST00000414174 TRGV2A0A075B6R0 118 aa2.12□□□□□ -2.07
SF3B1-203ENST00000414174 IGKV2-40A0A087WW87 121 aaPredicted RBP2.12□□□□□ -2.07
SF3B1-203ENST00000414174 NCR3O14931 201 aa2.12□□□□□ -2.07
SF3B1-203ENST00000414174 IGKV2D-40P01614 121 aaPredicted RBP2.12□□□□□ -2.07
SF3B1-203ENST00000414174 COX17Q14061 63 aa2.12□□□□□ -2.07
SF3B1-203ENST00000414174 Q6ZTI0 123 aa2.12□□□□□ -2.07
SF3B1-203ENST00000414174 ARHGAP32A7KAX9 2087 aa2.11□□□□□ -2.07
SF3B1-203ENST00000414174 SRCAPQ6ZRS2 3230 aa2.11□□□□□ -2.07
SF3B1-203ENST00000414174 NBDYA0A0U1RRE5 68 aa2.11□□□□□ -2.07
SF3B1-203ENST00000414174 TRBV6-4A0A1B0GX49 114 aa2.11□□□□□ -2.07
SF3B1-203ENST00000414174 IGKV4-1P06312 121 aa2.11□□□□□ -2.07
SF3B1-203ENST00000414174 SPINT4Q6UDR6 99 aa2.11□□□□□ -2.07
SF3B1-203ENST00000414174 DNAJC13O75165 2243 aa2.11□□□□□ -2.07
SF3B1-203ENST00000414174 COL4A5P29400 1685 aa2.1□□□□□ -2.07
SF3B1-203ENST00000414174 IGLV4-60A0A075B6I1 120 aa2.1□□□□□ -2.07
SF3B1-203ENST00000414174 A0A1W2PNN7 141 aa2.1□□□□□ -2.07
SF3B1-203ENST00000414174 FXYD4P59646 89 aa2.1□□□□□ -2.07
SF3B1-203ENST00000414174 SMIM2Q9BVW6 85 aa2.1□□□□□ -2.07
SF3B1-203ENST00000414174 R4GN34 69 aa2.1□□□□□ -2.07
SF3B1-203ENST00000414174 ARFGEF3Q5TH69 2177 aa2.1□□□□□ -2.07
SF3B1-203ENST00000414174 NOTCH2Q04721 2471 aa2.09□□□□□ -2.07
SF3B1-203ENST00000414174 IGKV2-29A2NJV5 120 aaPredicted RBP2.09□□□□□ -2.07
SF3B1-203ENST00000414174 COX7BP24311 80 aa2.09□□□□□ -2.07
SF3B1-203ENST00000414174 LCE3CQ5T5A8 94 aa2.09□□□□□ -2.07
SF3B1-203ENST00000414174 LCE3AQ5TA76 89 aa2.09□□□□□ -2.07
SF3B1-203ENST00000414174 LINC00308Q8TCZ7 52 aa2.09□□□□□ -2.07
SF3B1-203ENST00000414174 Q96NJ1 140 aa2.09□□□□□ -2.07
SF3B1-203ENST00000414174 ESPL1Q14674 2120 aa2.09□□□□□ -2.08
SF3B1-203ENST00000414174 SSC5DA1L4H1 1573 aa2.08□□□□□ -2.08
SF3B1-203ENST00000414174 CUL9Q8IWT3 2517 aa2.08□□□□□ -2.08
SF3B1-203ENST00000414174 TRGV1A0A0A0MS02 117 aa2.08□□□□□ -2.08
SF3B1-203ENST00000414174 A0A0J9YWU9 116 aa2.08□□□□□ -2.08
SF3B1-203ENST00000414174 TTTY10Q9BZA0 68 aa2.08□□□□□ -2.08
SF3B1-203ENST00000414174 ZFHX3Q15911 3703 aa2.08□□□□□ -2.08
SF3B1-203ENST00000414174 LOC730098B7Z3J9 87 aa2.07□□□□□ -2.08
SF3B1-203ENST00000414174 RPL37AP61513 92 aaKnown RBP2.07□□□□□ -2.08
SF3B1-203ENST00000414174 KRTAP7-1Q8IUC3 87 aa2.07□□□□□ -2.08
SF3B1-203ENST00000414174 C5orf56Q8N8D9 126 aa2.07□□□□□ -2.08
SF3B1-203ENST00000414174 PRRC2AP48634 2157 aaKnown RBP2.07□□□□□ -2.08
SF3B1-203ENST00000414174 IGKV2D-29A0A075B6S2 120 aaPredicted RBP2.06□□□□□ -2.08
SF3B1-203ENST00000414174 A0A1B0GU69 56 aa2.06□□□□□ -2.08
Retrieved 100 of 20,778 RNA–protein pairs in 67.6 ms