RNA–Protein interactions for RNA: ENST00000412061.3

BRCA1-204, Transcript of BRCA1, DNA repair associated, humanhuman

TSL 1 (best)

Gene BRCA1, Length 1,312 nt, Biotype non stop decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1-204ENST00000412061 NHSL1Q5SYE7 1610 aa1.76□□□□□ -2.13
BRCA1-204ENST00000412061 CICQ96RK0 1608 aaPredicted RBP1.76□□□□□ -2.13
BRCA1-204ENST00000412061 TJP1Q07157 1748 aa1.76□□□□□ -2.13
BRCA1-204ENST00000412061 FMN2Q9NZ56 1722 aa1.76□□□□□ -2.13
BRCA1-204ENST00000412061 ZNF236Q9UL36 1845 aa1.75□□□□□ -2.13
BRCA1-204ENST00000412061 PDCD11Q14690 1871 aaKnown RBP1.75□□□□□ -2.13
BRCA1-204ENST00000412061 LY6G6CO95867 125 aa1.75□□□□□ -2.13
BRCA1-204ENST00000412061 LYNX1P0DP58 116 aa1.75□□□□□ -2.13
BRCA1-204ENST00000412061 HMGN3Q15651 99 aa1.75□□□□□ -2.13
BRCA1-204ENST00000412061 S100A16Q96FQ6 103 aaKnown RBP1.75□□□□□ -2.13
BRCA1-204ENST00000412061 FLG2Q5D862 2391 aaPredicted RBP1.75□□□□□ -2.13
BRCA1-204ENST00000412061 TOGARAM1Q9Y4F4 1720 aa1.75□□□□□ -2.13
BRCA1-204ENST00000412061 SORL1Q92673 2214 aa1.74□□□□□ -2.13
BRCA1-204ENST00000412061 RGPD8O14715 1765 aaPredicted RBP1.74□□□□□ -2.13
BRCA1-204ENST00000412061 RGPD5Q99666 1765 aa1.74□□□□□ -2.13
BRCA1-204ENST00000412061 FAM223AQ8IWN6 122 aa1.74□□□□□ -2.13
BRCA1-204ENST00000412061 S100A13Q99584 98 aa1.74□□□□□ -2.13
BRCA1-204ENST00000412061 PLCH1Q4KWH8 1693 aa1.74□□□□□ -2.13
BRCA1-204ENST00000412061 PMCHL1Q16048 86 aa1.73□□□□□ -2.13
BRCA1-204ENST00000412061 NCBP2-AS2Q69YL0 99 aa1.73□□□□□ -2.13
BRCA1-204ENST00000412061 ALKAL2Q6UX46 152 aa1.73□□□□□ -2.13
BRCA1-204ENST00000412061 BAGE2Q86Y30 109 aa1.73□□□□□ -2.13
BRCA1-204ENST00000412061 TOMM5Q8N4H5 51 aa1.73□□□□□ -2.13
BRCA1-204ENST00000412061 AMELXQ99217 191 aa1.73□□□□□ -2.13
BRCA1-204ENST00000412061 ABRACLQ9P1F3 81 aa1.73□□□□□ -2.13
BRCA1-204ENST00000412061 F5P12259 2224 aa1.73□□□□□ -2.13
BRCA1-204ENST00000412061 DIP2BQ9P265 1576 aa1.73□□□□□ -2.13
BRCA1-204ENST00000412061 PAPPAQ13219 1627 aa1.73□□□□□ -2.13
BRCA1-204ENST00000412061 C5P01031 1676 aa1.73□□□□□ -2.13
BRCA1-204ENST00000412061 DDX60LQ5H9U9 1706 aaKnown RBP1.73□□□□□ -2.13
BRCA1-204ENST00000412061 MYO7BQ6PIF6 2116 aa1.73□□□□□ -2.13
BRCA1-204ENST00000412061 TRBV25-1A0A075B6N4 114 aa1.72□□□□□ -2.13
BRCA1-204ENST00000412061 ZNF137PP52743 207 aa1.72□□□□□ -2.13
BRCA1-204ENST00000412061 SMIM11AP58511 58 aa1.72□□□□□ -2.13
BRCA1-204ENST00000412061 SPINK13Q1W4C9 94 aa1.72□□□□□ -2.13
BRCA1-204ENST00000412061 TDRG1Q3Y452 100 aa1.72□□□□□ -2.13
BRCA1-204ENST00000412061 PLAC4Q8WY50 150 aa1.72□□□□□ -2.13
BRCA1-204ENST00000412061 LINC01558Q9Y6Z2 57 aa1.72□□□□□ -2.13
BRCA1-204ENST00000412061 NRXN3Q9Y4C0 1643 aa1.72□□□□□ -2.13
BRCA1-204ENST00000412061 ARFGEF2Q9Y6D5 1785 aa1.72□□□□□ -2.13
BRCA1-204ENST00000412061 BTAF1O14981 1849 aa1.72□□□□□ -2.13
BRCA1-204ENST00000412061 A0A087WWC5 75 aa1.71□□□□□ -2.14
BRCA1-204ENST00000412061 KANTRA0A1W2PQU2 76 aa1.71□□□□□ -2.14
BRCA1-204ENST00000412061 FAM223BA6NKX1 122 aa1.71□□□□□ -2.14
BRCA1-204ENST00000412061 C10orf142B7Z368 130 aa1.71□□□□□ -2.14
BRCA1-204ENST00000412061 F2Z2F3 143 aa1.71□□□□□ -2.14
BRCA1-204ENST00000412061 UQCR11O14957 56 aa1.71□□□□□ -2.14
BRCA1-204ENST00000412061 SAA2P0DJI9 122 aaPredicted RBP1.71□□□□□ -2.14
BRCA1-204ENST00000412061 S100A3P33764 101 aa1.71□□□□□ -2.14
BRCA1-204ENST00000412061 KRTAP12-4P60329 112 aa1.71□□□□□ -2.14
BRCA1-204ENST00000412061 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa1.71□□□□□ -2.14
BRCA1-204ENST00000412061 HEPN1Q6WQI6 88 aa1.71□□□□□ -2.14
BRCA1-204ENST00000412061 RPS27LQ71UM5 84 aaKnown RBP1.71□□□□□ -2.14
BRCA1-204ENST00000412061 SMIM4Q8WVI0 70 aa1.71□□□□□ -2.14
BRCA1-204ENST00000412061 HIGD1BQ9P298 99 aa1.71□□□□□ -2.14
BRCA1-204ENST00000412061 RGPD2P0DJD1 1756 aa1.71□□□□□ -2.14
BRCA1-204ENST00000412061 SCN11AQ9UI33 1791 aa1.71□□□□□ -2.14
BRCA1-204ENST00000412061 NUP188Q5SRE5 1749 aa1.71□□□□□ -2.14
BRCA1-204ENST00000412061 TNRC6CQ9HCJ0 1690 aaKnown RBP1.71□□□□□ -2.14
BRCA1-204ENST00000412061 KCPQ6ZWJ8 1503 aa1.71□□□□□ -2.14
BRCA1-204ENST00000412061 MYO7AQ13402 2215 aa1.7□□□□□ -2.14
BRCA1-204ENST00000412061 FXYD6-FXYD2A0A087WZ82 144 aa1.7□□□□□ -2.14
BRCA1-204ENST00000412061 C7orf77A4D0Y5 90 aa1.7□□□□□ -2.14
BRCA1-204ENST00000412061 PRB1P04280 392 aa1.7□□□□□ -2.14
BRCA1-204ENST00000412061 PSMG4Q5JS54 123 aa1.7□□□□□ -2.14
BRCA1-204ENST00000412061 FXYD6Q9H0Q3 95 aa1.7□□□□□ -2.14
BRCA1-204ENST00000412061 ALS2Q96Q42 1657 aa1.7□□□□□ -2.14
BRCA1-204ENST00000412061 ZDBF2Q9HCK1 2354 aa1.69□□□□□ -2.14
BRCA1-204ENST00000412061 A0A096LNT2 108 aa1.69□□□□□ -2.14
BRCA1-204ENST00000412061 ZNF815PA8K554 130 aa1.69□□□□□ -2.14
BRCA1-204ENST00000412061 M0R3E3 92 aa1.69□□□□□ -2.14
BRCA1-204ENST00000412061 SFTA3P0C7M3 94 aa1.69□□□□□ -2.14
BRCA1-204ENST00000412061 CFAP126Q5VTH2 177 aa1.69□□□□□ -2.14
BRCA1-204ENST00000412061 NMES1Q9C002 83 aa1.69□□□□□ -2.14
BRCA1-204ENST00000412061 DOT1LQ8TEK3 1739 aa1.69□□□□□ -2.14
BRCA1-204ENST00000412061 NRAPQ86VF7 1730 aa1.69□□□□□ -2.14
BRCA1-204ENST00000412061 RPL37P61927 97 aaKnown RBP1.68□□□□□ -2.14
BRCA1-204ENST00000412061 Q6ZSA8 131 aa1.68□□□□□ -2.14
BRCA1-204ENST00000412061 DEFB106AQ8N104 65 aa1.68□□□□□ -2.14
BRCA1-204ENST00000412061 SMIM11BQ8TCY0 68 aa1.68□□□□□ -2.14
BRCA1-204ENST00000412061 RABAC1Q9UI14 185 aa1.68□□□□□ -2.14
BRCA1-204ENST00000412061 FBN1P35555 2871 aaKnown RBP1.68□□□□□ -2.14
BRCA1-204ENST00000412061 TRIOBPQ9H2D6 2365 aa1.68□□□□□ -2.14
BRCA1-204ENST00000412061 LOC730098B7Z3J9 87 aa1.67□□□□□ -2.14
BRCA1-204ENST00000412061 RPL38P63173 70 aaKnown RBP1.67□□□□□ -2.14
BRCA1-204ENST00000412061 COX17Q14061 63 aa1.67□□□□□ -2.14
BRCA1-204ENST00000412061 CNTRLQ7Z7A1 2325 aa1.67□□□□□ -2.14
BRCA1-204ENST00000412061 NHSQ6T4R5 1651 aa1.67□□□□□ -2.14
BRCA1-204ENST00000412061 LTN1O94822 1766 aa1.67□□□□□ -2.14
BRCA1-204ENST00000412061 RP1L1Q8IWN7 2480 aaPredicted RBP1.67□□□□□ -2.14
BRCA1-204ENST00000412061 KNTC1P50748 2209 aa1.67□□□□□ -2.14
BRCA1-204ENST00000412061 GVQW2A0A096LPI5 108 aaPredicted RBP1.66□□□□□ -2.14
BRCA1-204ENST00000412061 A0A1B0GWA3 101 aa1.66□□□□□ -2.14
BRCA1-204ENST00000412061 UMAD1C9J7I0 102 aa1.66□□□□□ -2.14
BRCA1-204ENST00000412061 MGPP08493 103 aa1.66□□□□□ -2.14
BRCA1-204ENST00000412061 SPINT3P49223 89 aa1.66□□□□□ -2.14
BRCA1-204ENST00000412061 ETDBQ3ZM63 59 aa1.66□□□□□ -2.14
BRCA1-204ENST00000412061 PRR15LQ9BU68 103 aa1.66□□□□□ -2.14
BRCA1-204ENST00000412061 SPCS1Q9Y6A9 102 aa1.66□□□□□ -2.14
BRCA1-204ENST00000412061 SSC5DA1L4H1 1573 aa1.66□□□□□ -2.14
Retrieved 100 of 20,778 RNA–protein pairs in 93.4 ms