RNA–Protein interactions for RNA: ENST00000403076.5

SDC1-203, Transcript of syndecan 1, humanhuman

TSL 1 (best) BASIC

Gene SDC1, Length 1,523 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-203ENST00000403076 SYCNQ0VAF6 134 aa11.81□□□□□ -0.52
SDC1-203ENST00000403076 UNQ6190/PRO20217Q6UXQ8 127 aa11.81□□□□□ -0.52
SDC1-203ENST00000403076 MYMXA0A1B0GTQ4 84 aa11.81□□□□□ -0.52
SDC1-203ENST00000403076 TRAV16A0A0A6YYK6 109 aaPredicted RBP11.8□□□□□ -0.52
SDC1-203ENST00000403076 LINC00518Q8N0U6 118 aa11.8□□□□□ -0.52
SDC1-203ENST00000403076 TTTY13Q9BZ97 58 aa11.8□□□□□ -0.52
SDC1-203ENST00000403076 DNAH10Q8IVF4 4471 aa11.79□□□□□ -0.52
SDC1-203ENST00000403076 ZNF815PA8K554 130 aa11.79□□□□□ -0.52
SDC1-203ENST00000403076 C10orf25Q5T742 122 aa11.79□□□□□ -0.52
SDC1-203ENST00000403076 SFTA2Q6UW10 78 aa11.79□□□□□ -0.52
SDC1-203ENST00000403076 Q6ZRU5 148 aa11.79□□□□□ -0.52
SDC1-203ENST00000403076 ZNF625Q96I27 306 aaPredicted RBP11.79□□□□□ -0.52
SDC1-203ENST00000403076 CARD19Q96LW7 228 aa11.79□□□□□ -0.52
SDC1-203ENST00000403076 RYR2Q92736 4967 aa11.78□□□□□ -0.52
SDC1-203ENST00000403076 SLPIP03973 132 aa11.78□□□□□ -0.52
SDC1-203ENST00000403076 PCP2Q8IVA1 136 aa11.78□□□□□ -0.52
SDC1-203ENST00000403076 C12orf57Q99622 126 aa11.78□□□□□ -0.52
SDC1-203ENST00000403076 DNAH2Q9P225 4427 aa11.78□□□□□ -0.52
SDC1-203ENST00000403076 CNBPP62633 177 aaKnown RBP11.76□□□□□ -0.53
SDC1-203ENST00000403076 HERV-K104P63124 156 aa11.76□□□□□ -0.53
SDC1-203ENST00000403076 RYR3Q15413 4870 aa11.76□□□□□ -0.53
SDC1-203ENST00000403076 TRBV30A0A0K0K1B3 111 aa11.76□□□□□ -0.53
SDC1-203ENST00000403076 C14orf144Q96I85 54 aa11.76□□□□□ -0.53
SDC1-203ENST00000403076 MEIG1Q5JSS6 88 aa11.75□□□□□ -0.53
SDC1-203ENST00000403076 C6orf48Q9UBA6 75 aa11.75□□□□□ -0.53
SDC1-203ENST00000403076 COX8AP10176 69 aa11.74□□□□□ -0.53
SDC1-203ENST00000403076 C9orf116Q5BN46 136 aaPredicted RBP11.74□□□□□ -0.53
SDC1-203ENST00000403076 SCGB1D4Q6XE38 83 aa11.74□□□□□ -0.53
SDC1-203ENST00000403076 IGLV5-52A0A0A0MRZ9 124 aa11.73□□□□□ -0.53
SDC1-203ENST00000403076 FUSP35637 526 aaKnown RBP eCLIP11.73□□□□□ -0.532e-6■■□□□ 12.3
SDC1-203ENST00000403076 RNF151Q2KHN1 245 aa11.72□□□□□ -0.53
SDC1-203ENST00000403076 A0A0J9YXY3 114 aa11.71□□□□□ -0.53
SDC1-203ENST00000403076 A0A0U1RRA0 63 aa11.71□□□□□ -0.53
SDC1-203ENST00000403076 PFN2P35080 140 aa11.71□□□□□ -0.53
SDC1-203ENST00000403076 SLC25A34Q6PIV7 304 aa11.71□□□□□ -0.53
SDC1-203ENST00000403076 ERG28Q9UKR5 140 aa11.71□□□□□ -0.53
SDC1-203ENST00000403076 LINC00587B1AMM8 73 aa11.7□□□□□ -0.54
SDC1-203ENST00000403076 DLEU1O43261 78 aa11.7□□□□□ -0.54
SDC1-203ENST00000403076 LINC00158P58513 81 aa11.7□□□□□ -0.54
SDC1-203ENST00000403076 KRTAP10-2P60368 255 aa11.7□□□□□ -0.54
SDC1-203ENST00000403076 BOD1L2Q8IYS8 172 aa11.7□□□□□ -0.54
SDC1-203ENST00000403076 C9orf163Q8N9P6 203 aa11.7□□□□□ -0.54
SDC1-203ENST00000403076 PGPEP1Q9NXJ5 209 aa11.7□□□□□ -0.54
SDC1-203ENST00000403076 DNAH17Q9UFH2 4485 aa11.7□□□□□ -0.54
SDC1-203ENST00000403076 CIRBPQ14011 172 aaKnown RBP11.7□□□□□ -0.54
SDC1-203ENST00000403076 SMIM13P0DJ93 91 aa11.69□□□□□ -0.54
SDC1-203ENST00000403076 LINC01620Q4KN68 170 aa11.69□□□□□ -0.54
SDC1-203ENST00000403076 PRO1933Q9H354 126 aa11.68□□□□□ -0.54
SDC1-203ENST00000403076 TP73-AS1Q9UF72 201 aa11.68□□□□□ -0.54
SDC1-203ENST00000403076 LOC107984640A0A0U1RRK4 108 aa11.67□□□□□ -0.54
SDC1-203ENST00000403076 RPL18AQ02543 176 aaKnown RBP11.67□□□□□ -0.54
SDC1-203ENST00000403076 COX17Q14061 63 aa11.67□□□□□ -0.54
SDC1-203ENST00000403076 PKIGQ9Y2B9 76 aa11.66□□□□□ -0.54
SDC1-203ENST00000403076 NDUFC2-KCTD14E9PQ53 114 aa11.65□□□□□ -0.54
SDC1-203ENST00000403076 GAGE2BQ13066 116 aa11.65□□□□□ -0.54
SDC1-203ENST00000403076 GAGE2EQ4V326 116 aa11.65□□□□□ -0.54
SDC1-203ENST00000403076 UQCR10Q9UDW1 63 aa11.65□□□□□ -0.54
SDC1-203ENST00000403076 GAGE2DQ9UEU5 116 aa11.65□□□□□ -0.54
SDC1-203ENST00000403076 FRAS1Q86XX4 4008 aa11.65□□□□□ -0.54
SDC1-203ENST00000403076 A0A1B0GVY2 172 aa11.64□□□□□ -0.55
SDC1-203ENST00000403076 TIMM17BO60830 172 aa11.64□□□□□ -0.55
SDC1-203ENST00000403076 TLX1NBP0CAT3 122 aa11.64□□□□□ -0.55
SDC1-203ENST00000403076 TMEM238C9JI98 176 aa11.63□□□□□ -0.55
SDC1-203ENST00000403076 TSTD3H0UI37 97 aa11.63□□□□□ -0.55
SDC1-203ENST00000403076 GCSHP23434 173 aa11.63□□□□□ -0.55
SDC1-203ENST00000403076 MIR7-3HGQ8N6C7 128 aa11.63□□□□□ -0.55
SDC1-203ENST00000403076 DAND5Q8N907 189 aa11.63□□□□□ -0.55
SDC1-203ENST00000403076 ADAMTSL4-AS1Q5T5F5 129 aa11.62□□□□□ -0.55
SDC1-203ENST00000403076 SDIM1Q6ZPB5 146 aa11.62□□□□□ -0.55
SDC1-203ENST00000403076 Q6ZRP5 223 aa11.62□□□□□ -0.55
SDC1-203ENST00000403076 IGKV2-24A0A0C4DH68 120 aa11.61□□□□□ -0.55
SDC1-203ENST00000403076 CTAG1AP78358 180 aa11.61□□□□□ -0.55
SDC1-203ENST00000403076 SRSF9Q13242 221 aaKnown RBP eCLIP11.61□□□□□ -0.55
SDC1-203ENST00000403076 MIEN1Q9BRT3 115 aa11.61□□□□□ -0.55
SDC1-203ENST00000403076 LITAFQ99732 161 aa11.6□□□□□ -0.55
SDC1-203ENST00000403076 XAGE1AQ9HD64 81 aa11.6□□□□□ -0.55
SDC1-203ENST00000403076 FAT2Q9NYQ8 4349 aa11.6□□□□□ -0.55
SDC1-203ENST00000403076 A0A096LNI7 61 aa11.6□□□□□ -0.55
SDC1-203ENST00000403076 SND1-IT1Q9HBX3 110 aa11.6□□□□□ -0.55
SDC1-203ENST00000403076 HIGD1BQ9P298 99 aa11.6□□□□□ -0.55
SDC1-203ENST00000403076 C16orf90A8MZG2 172 aa11.59□□□□□ -0.55
SDC1-203ENST00000403076 PTTG1IPP53801 180 aa11.59□□□□□ -0.55
SDC1-203ENST00000403076 NPC2P61916 151 aa11.59□□□□□ -0.55
SDC1-203ENST00000403076 DPH3Q96FX2 82 aa11.59□□□□□ -0.55
SDC1-203ENST00000403076 C2orf91Q6ZV80 131 aa11.58□□□□□ -0.56
SDC1-203ENST00000403076 HNRNPA3P51991 378 aaKnown RBP11.57□□□□□ -0.56
SDC1-203ENST00000403076 HIST1H4GQ99525 98 aa11.57□□□□□ -0.56
SDC1-203ENST00000403076 SPANXDQ9BXN6 97 aa11.57□□□□□ -0.56
SDC1-203ENST00000403076 SPANXB1Q9NS25 103 aaPredicted RBP11.57□□□□□ -0.56
SDC1-203ENST00000403076 SPANXCQ9NY87 97 aa11.57□□□□□ -0.56
SDC1-203ENST00000403076 CHTF8P0CG12 524 aa11.56□□□□□ -0.56
SDC1-203ENST00000403076 Q6ZVH6 145 aa11.56□□□□□ -0.56
SDC1-203ENST00000403076 LINC00474Q9P2X8 69 aa11.56□□□□□ -0.56
SDC1-203ENST00000403076 KRTAP10-1P60331 282 aa11.55□□□□□ -0.56
SDC1-203ENST00000403076 LINC00308Q8TCZ7 52 aa11.55□□□□□ -0.56
SDC1-203ENST00000403076 IFITM1P13164 125 aa11.54□□□□□ -0.56
SDC1-203ENST00000403076 C9orf129Q5T035 196 aaKnown RBP11.54□□□□□ -0.56
SDC1-203ENST00000403076 COPS9Q8WXC6 57 aa11.54□□□□□ -0.56
SDC1-203ENST00000403076 MUSTN1Q8IVN3 82 aa11.53□□□□□ -0.56
SDC1-203ENST00000403076 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP11.52□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 50 ms