RNA–Protein interactions for RNA: ENST00000368440.4

SMPDL3A-201, Transcript of sphingomyelin phosphodiesterase acid like 3A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SMPDL3A, Length 1,851 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPDL3A-201ENST00000368440 IGHV3-64A0A075B6Q5 118 aa9.74□□□□□ -0.85
SMPDL3A-201ENST00000368440 COX7A2LO14548 114 aa9.74□□□□□ -0.85
SMPDL3A-201ENST00000368440 UBE2D1P51668 147 aa9.74□□□□□ -0.85
SMPDL3A-201ENST00000368440 CNBPP62633 177 aaKnown RBP9.74□□□□□ -0.85
SMPDL3A-201ENST00000368440 PCP2Q8IVA1 136 aa9.74□□□□□ -0.85
SMPDL3A-201ENST00000368440 C9orf163Q8N9P6 203 aa9.74□□□□□ -0.85
SMPDL3A-201ENST00000368440 IGHV1-58A0A0C4DH39 117 aa9.74□□□□□ -0.85
SMPDL3A-201ENST00000368440 SLC25A34Q6PIV7 304 aa9.74□□□□□ -0.85
SMPDL3A-201ENST00000368440 Q6ZSA8 131 aa9.74□□□□□ -0.85
SMPDL3A-201ENST00000368440 IGHV3OR16-9A0A0B4J2B5 98 aa9.73□□□□□ -0.85
SMPDL3A-201ENST00000368440 ZNF22P17026 224 aaPredicted RBP9.73□□□□□ -0.85
SMPDL3A-201ENST00000368440 LINC00242Q5T6M2 205 aa9.73□□□□□ -0.85
SMPDL3A-201ENST00000368440 GEMIN7Q9H840 131 aaKnown RBP9.73□□□□□ -0.85
SMPDL3A-201ENST00000368440 COX8AP10176 69 aa9.72□□□□□ -0.85
SMPDL3A-201ENST00000368440 HNRNPA3P51991 378 aaKnown RBP9.72□□□□□ -0.85
SMPDL3A-201ENST00000368440 COX6A2Q02221 97 aa9.72□□□□□ -0.85
SMPDL3A-201ENST00000368440 LINC00469Q8N7U9 141 aa9.72□□□□□ -0.85
SMPDL3A-201ENST00000368440 MALP21145 153 aa9.72□□□□□ -0.85
SMPDL3A-201ENST00000368440 TINCRA0A1B0GVN0 87 aa9.71□□□□□ -0.85
SMPDL3A-201ENST00000368440 HERVK_113P61574 105 aa9.71□□□□□ -0.85
SMPDL3A-201ENST00000368440 SPINK8P0C7L1 97 aa9.7□□□□□ -0.86
SMPDL3A-201ENST00000368440 CTAG1AP78358 180 aa9.7□□□□□ -0.86
SMPDL3A-201ENST00000368440 CDKN2A-AS1Q9UH64 79 aa9.7□□□□□ -0.86
SMPDL3A-201ENST00000368440 TRAV16A0A0A6YYK6 109 aaPredicted RBP9.69□□□□□ -0.86
SMPDL3A-201ENST00000368440 TMEM223A0PJW6 202 aa9.69□□□□□ -0.86
SMPDL3A-201ENST00000368440 E9PLD3 99 aa9.69□□□□□ -0.86
SMPDL3A-201ENST00000368440 SDIM1Q6ZPB5 146 aa9.69□□□□□ -0.86
SMPDL3A-201ENST00000368440 PANO1I0J062 215 aa9.68□□□□□ -0.86
SMPDL3A-201ENST00000368440 ZNF561-AS1K7EIQ3 104 aa9.68□□□□□ -0.86
SMPDL3A-201ENST00000368440 KRTAP4-5Q9BYR2 181 aa9.68□□□□□ -0.86
SMPDL3A-201ENST00000368440 FAM19A3Q7Z5A8 133 aa9.68□□□□□ -0.86
SMPDL3A-201ENST00000368440 BOD1L2Q8IYS8 172 aa9.68□□□□□ -0.86
SMPDL3A-201ENST00000368440 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP9.68□□□□□ -0.86
SMPDL3A-201ENST00000368440 APOMO95445 188 aa9.67□□□□□ -0.86
SMPDL3A-201ENST00000368440 SMR3BP02814 79 aaPredicted RBP9.67□□□□□ -0.86
SMPDL3A-201ENST00000368440 TSPEAR-AS2P59090 65 aa9.67□□□□□ -0.86
SMPDL3A-201ENST00000368440 HERVK_113P63121 156 aa9.67□□□□□ -0.86
SMPDL3A-201ENST00000368440 SCXQ7RTU7 201 aa9.67□□□□□ -0.86
SMPDL3A-201ENST00000368440 ORAOV1Q8WV07 137 aa9.67□□□□□ -0.86
SMPDL3A-201ENST00000368440 A0A087WZ39 114 aa9.66□□□□□ -0.86
SMPDL3A-201ENST00000368440 SPAG11BQ08648 103 aa9.66□□□□□ -0.86
SMPDL3A-201ENST00000368440 Q8N1X5 172 aa9.66□□□□□ -0.86
SMPDL3A-201ENST00000368440 SEC11AP67812 179 aa9.66□□□□□ -0.86
SMPDL3A-201ENST00000368440 BATFQ16520 125 aa9.66□□□□□ -0.86
SMPDL3A-201ENST00000368440 CARD19Q96LW7 228 aa9.66□□□□□ -0.86
SMPDL3A-201ENST00000368440 ZNF815PA8K554 130 aa9.65□□□□□ -0.86
SMPDL3A-201ENST00000368440 H3BRM9 83 aa9.65□□□□□ -0.86
SMPDL3A-201ENST00000368440 CHTF8P0CG12 524 aa9.65□□□□□ -0.86
SMPDL3A-201ENST00000368440 LGALS3P17931 250 aaKnown RBP9.65□□□□□ -0.86
SMPDL3A-201ENST00000368440 SYCNQ0VAF6 134 aa9.65□□□□□ -0.86
SMPDL3A-201ENST00000368440 Q6ZRU5 148 aa9.65□□□□□ -0.86
SMPDL3A-201ENST00000368440 C2orf91Q6ZV80 131 aa9.65□□□□□ -0.86
SMPDL3A-201ENST00000368440 J3QQQ9 107 aa9.64□□□□□ -0.87
SMPDL3A-201ENST00000368440 LEPROTO15243 131 aa9.64□□□□□ -0.87
SMPDL3A-201ENST00000368440 CIRBP-AS1Q8TBR5 109 aa9.64□□□□□ -0.87
SMPDL3A-201ENST00000368440 MYMXA0A1B0GTQ4 84 aa9.64□□□□□ -0.87
SMPDL3A-201ENST00000368440 CAMK2N2Q96S95 79 aa9.64□□□□□ -0.87
SMPDL3A-201ENST00000368440 IGLV5-45A0A087WSX0 123 aa9.63□□□□□ -0.87
SMPDL3A-201ENST00000368440 C2orf48Q96LS8 159 aa9.63□□□□□ -0.87
SMPDL3A-201ENST00000368440 FAT1Q14517 4588 aa9.62□□□□□ -0.87
SMPDL3A-201ENST00000368440 HINT1P49773 126 aaPredicted RBP9.62□□□□□ -0.87
SMPDL3A-201ENST00000368440 KIAA0087Q14695 138 aa9.62□□□□□ -0.87
SMPDL3A-201ENST00000368440 DLEU1O43261 78 aa9.62□□□□□ -0.87
SMPDL3A-201ENST00000368440 CIRBPQ14011 172 aaKnown RBP9.62□□□□□ -0.87
SMPDL3A-201ENST00000368440 PLEKHB2Q96CS7 222 aa9.62□□□□□ -0.87
SMPDL3A-201ENST00000368440 C10orf25Q5T742 122 aa9.61□□□□□ -0.87
SMPDL3A-201ENST00000368440 SCGB1D4Q6XE38 83 aa9.61□□□□□ -0.87
SMPDL3A-201ENST00000368440 LINC01561Q8N1V8 128 aa9.61□□□□□ -0.87
SMPDL3A-201ENST00000368440 A0A096LNI7 61 aa9.6□□□□□ -0.87
SMPDL3A-201ENST00000368440 SMIM1B2RUZ4 78 aa9.6□□□□□ -0.87
SMPDL3A-201ENST00000368440 SPACA4Q8TDM5 124 aa9.6□□□□□ -0.87
SMPDL3A-201ENST00000368440 SNHG12Q9BXW3 62 aa9.6□□□□□ -0.87
SMPDL3A-201ENST00000368440 IGKV2-24A0A0C4DH68 120 aa9.59□□□□□ -0.87
SMPDL3A-201ENST00000368440 Q5VSD8 79 aa9.59□□□□□ -0.87
SMPDL3A-201ENST00000368440 ABCA13Q86UQ4 5058 aa9.59□□□□□ -0.87
SMPDL3A-201ENST00000368440 C2orf82Q6UX34 121 aa9.59□□□□□ -0.87
SMPDL3A-201ENST00000368440 UNQ6190/PRO20217Q6UXQ8 127 aa9.59□□□□□ -0.87
SMPDL3A-201ENST00000368440 TOMM7Q9P0U1 55 aa9.59□□□□□ -0.87
SMPDL3A-201ENST00000368440 M0R143 59 aa9.58□□□□□ -0.88
SMPDL3A-201ENST00000368440 EPM2AB3EWF7 344 aa9.57□□□□□ -0.88
SMPDL3A-201ENST00000368440 NDUFA1O15239 70 aa9.57□□□□□ -0.88
SMPDL3A-201ENST00000368440 C6orf48Q9UBA6 75 aa9.57□□□□□ -0.88
SMPDL3A-201ENST00000368440 NDUFA12Q9UI09 145 aa9.57□□□□□ -0.88
SMPDL3A-201ENST00000368440 LINC00528Q8N1L1 170 aa9.57□□□□□ -0.88
SMPDL3A-201ENST00000368440 A0A087WYN8 130 aa9.56□□□□□ -0.88
SMPDL3A-201ENST00000368440 IGLV5-39A0A0G2JS06 123 aa9.56□□□□□ -0.88
SMPDL3A-201ENST00000368440 PCLOQ9Y6V0 5065 aa9.56□□□□□ -0.88
SMPDL3A-201ENST00000368440 LOC107984640A0A0U1RRK4 108 aa9.55□□□□□ -0.88
SMPDL3A-201ENST00000368440 F8WDY8 70 aa9.55□□□□□ -0.88
SMPDL3A-201ENST00000368440 Q8IZM0 81 aa9.55□□□□□ -0.88
SMPDL3A-201ENST00000368440 DPH3Q96FX2 82 aa9.55□□□□□ -0.88
SMPDL3A-201ENST00000368440 ZNF625Q96I27 306 aaPredicted RBP9.55□□□□□ -0.88
SMPDL3A-201ENST00000368440 RNF151Q2KHN1 245 aa9.55□□□□□ -0.88
SMPDL3A-201ENST00000368440 HIST1H4GQ99525 98 aa9.55□□□□□ -0.88
SMPDL3A-201ENST00000368440 HIGD1BQ9P298 99 aa9.55□□□□□ -0.88
SMPDL3A-201ENST00000368440 FAM229AH3BQW9 127 aa9.54□□□□□ -0.88
SMPDL3A-201ENST00000368440 PRSS2P07478 247 aa9.54□□□□□ -0.88
SMPDL3A-201ENST00000368440 PTTG1IPP53801 180 aa9.54□□□□□ -0.88
SMPDL3A-201ENST00000368440 RPL18AQ02543 176 aaKnown RBP9.54□□□□□ -0.88
SMPDL3A-201ENST00000368440 HSD52Q0P140 79 aa9.54□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 62.6 ms