RNA–Protein interactions for RNA: ENST00000338963.6

NEDD4-201, Transcript of neural precursor cell expressed, developmentally down-regulated 4, E3 ubiquitin protein ligase, humanhuman

TSL 1 (best) BASIC

Gene NEDD4, Length 7,019 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD4-201ENST00000338963 UNQ6190/PRO20217Q6UXQ8 127 aa2.68□□□□□ -1.98
NEDD4-201ENST00000338963 C6orf48Q9UBA6 75 aa2.68□□□□□ -1.98
NEDD4-201ENST00000338963 IGLV8-61A0A075B6I0 122 aa2.67□□□□□ -1.98
NEDD4-201ENST00000338963 DOCK3Q8IZD9 2030 aa2.67□□□□□ -1.98
NEDD4-201ENST00000338963 PCOTHQ58A44 107 aa2.67□□□□□ -1.98
NEDD4-201ENST00000338963 NUMA1Q14980 2115 aa2.67□□□□□ -1.98
NEDD4-201ENST00000338963 PLA2G2DQ9UNK4 145 aa2.66□□□□□ -1.98
NEDD4-201ENST00000338963 DEFB109BQ30KR1 87 aa2.66□□□□□ -1.98
NEDD4-201ENST00000338963 Q6ZR54 194 aa2.66□□□□□ -1.98
NEDD4-201ENST00000338963 LY6EQ16553 131 aa2.66□□□□□ -1.98
NEDD4-201ENST00000338963 KIAA1549Q9HCM3 1950 aa2.66□□□□□ -1.98
NEDD4-201ENST00000338963 Q8N377 158 aa2.66□□□□□ -1.98
NEDD4-201ENST00000338963 C2orf16Q68DN1 1984 aa2.66□□□□□ -1.98
NEDD4-201ENST00000338963 EML5Q05BV3 1969 aa2.65□□□□□ -1.98
NEDD4-201ENST00000338963 C7orf33Q8WU49 177 aa2.65□□□□□ -1.98
NEDD4-201ENST00000338963 IGKV2-24A0A0C4DH68 120 aa2.65□□□□□ -1.99
NEDD4-201ENST00000338963 DEFB132Q7Z7B7 95 aa2.65□□□□□ -1.99
NEDD4-201ENST00000338963 RALGAPA1Q6GYQ0 2036 aa2.65□□□□□ -1.99
NEDD4-201ENST00000338963 ADM2Q7Z4H4 148 aa2.64□□□□□ -1.99
NEDD4-201ENST00000338963 PCDH15Q96QU1 1955 aa2.64□□□□□ -1.99
NEDD4-201ENST00000338963 C4orf3Q8WVX3 66 aa2.64□□□□□ -1.99
NEDD4-201ENST00000338963 GTF3C1Q12789 2109 aa2.64□□□□□ -1.99
NEDD4-201ENST00000338963 AGRNO00468 2067 aa2.64□□□□□ -1.99
NEDD4-201ENST00000338963 EXPH5Q8NEV8 1989 aa2.64□□□□□ -1.99
NEDD4-201ENST00000338963 INAFM1C9JVW0 142 aa2.64□□□□□ -1.99
NEDD4-201ENST00000338963 LELP1Q5T871 98 aa2.64□□□□□ -1.99
NEDD4-201ENST00000338963 MED12LQ86YW9 2145 aa2.64□□□□□ -1.99
NEDD4-201ENST00000338963 NUPR2A6NF83 97 aa2.64□□□□□ -1.99
NEDD4-201ENST00000338963 RPL37AP61513 92 aaKnown RBP2.64□□□□□ -1.99
NEDD4-201ENST00000338963 TANC2Q9HCD6 1990 aa2.63□□□□□ -1.99
NEDD4-201ENST00000338963 TET1Q8NFU7 2136 aa2.63□□□□□ -1.99
NEDD4-201ENST00000338963 HCFC1P51610 2035 aa2.63□□□□□ -1.99
NEDD4-201ENST00000338963 MMP24-AS1A0A0U1RRL7 71 aa2.62□□□□□ -1.99
NEDD4-201ENST00000338963 BRD3OSQ6XYD6 125 aa2.62□□□□□ -1.99
NEDD4-201ENST00000338963 NCOA6Q14686 2063 aaPredicted RBP2.62□□□□□ -1.99
NEDD4-201ENST00000338963 RAI1Q7Z5J4 1906 aaPredicted RBP2.62□□□□□ -1.99
NEDD4-201ENST00000338963 ZNF861PO60384 105 aa2.62□□□□□ -1.99
NEDD4-201ENST00000338963 CLPSL2Q6UWE3 100 aa2.62□□□□□ -1.99
NEDD4-201ENST00000338963 CHTF8P0CG12 524 aa2.61□□□□□ -1.99
NEDD4-201ENST00000338963 IGFL1Q6UW32 110 aa2.61□□□□□ -1.99
NEDD4-201ENST00000338963 TMEM105Q8N8V8 129 aa2.61□□□□□ -1.99
NEDD4-201ENST00000338963 Q8NDZ9 215 aa2.61□□□□□ -1.99
NEDD4-201ENST00000338963 DSCAMO60469 2012 aa2.61□□□□□ -1.99
NEDD4-201ENST00000338963 DEFB130BP0DP73 79 aa2.61□□□□□ -1.99
NEDD4-201ENST00000338963 DEFB130AP0DP74 79 aa2.61□□□□□ -1.99
NEDD4-201ENST00000338963 SPRR1AP35321 89 aa2.61□□□□□ -1.99
NEDD4-201ENST00000338963 DEFB116Q30KQ4 102 aa2.61□□□□□ -1.99
NEDD4-201ENST00000338963 MRPL34Q9BQ48 92 aaKnown RBP2.61□□□□□ -1.99
NEDD4-201ENST00000338963 C8orf17Q9NRJ1 99 aa2.61□□□□□ -1.99
NEDD4-201ENST00000338963 PRR34Q9NV39 138 aa2.61□□□□□ -1.99
NEDD4-201ENST00000338963 TLX1NBP0CAT3 122 aa2.61□□□□□ -1.99
NEDD4-201ENST00000338963 ALPK2Q86TB3 2170 aa2.6□□□□□ -1.99
NEDD4-201ENST00000338963 IGLV7-43P04211 117 aa2.6□□□□□ -1.99
NEDD4-201ENST00000338963 SPINT4Q6UDR6 99 aa2.6□□□□□ -1.99
NEDD4-201ENST00000338963 PTPRBP23467 1997 aa2.6□□□□□ -1.99
NEDD4-201ENST00000338963 C15orf56Q8N910 161 aa2.6□□□□□ -1.99
NEDD4-201ENST00000338963 SPRR1BP22528 89 aa2.59□□□□□ -1.99
NEDD4-201ENST00000338963 SPTBP11277 2137 aa2.59□□□□□ -2
NEDD4-201ENST00000338963 PATE3B3GLJ2 98 aa2.59□□□□□ -2
NEDD4-201ENST00000338963 LUZP6Q538Z0 58 aa2.59□□□□□ -2
NEDD4-201ENST00000338963 LINC00483Q53H64 154 aa2.59□□□□□ -2
NEDD4-201ENST00000338963 PRO3102Q9H379 93 aa2.59□□□□□ -2
NEDD4-201ENST00000338963 LINC00472Q9H8W2 130 aa2.59□□□□□ -2
NEDD4-201ENST00000338963 HEATR1Q9H583 2144 aaKnown RBP2.58□□□□□ -2
NEDD4-201ENST00000338963 IGLV9-49A0A0B4J1Y8 123 aa2.58□□□□□ -2
NEDD4-201ENST00000338963 FAM229AH3BQW9 127 aa2.58□□□□□ -2
NEDD4-201ENST00000338963 SLURP1P55000 103 aa2.58□□□□□ -2
NEDD4-201ENST00000338963 LY6G6CO95867 125 aa2.58□□□□□ -2
NEDD4-201ENST00000338963 CCL19Q99731 98 aa2.58□□□□□ -2
NEDD4-201ENST00000338963 C20orf166-AS1Q96NR2 134 aa2.57□□□□□ -2
NEDD4-201ENST00000338963 CEP192Q8TEP8 1941 aa2.57□□□□□ -2
NEDD4-201ENST00000338963 CABIN1Q9Y6J0 2220 aa2.57□□□□□ -2
NEDD4-201ENST00000338963 CACNA1DQ01668 2161 aa2.57□□□□□ -2
NEDD4-201ENST00000338963 DEFB113Q30KQ7 82 aa2.57□□□□□ -2
NEDD4-201ENST00000338963 ANAPC11Q9NYG5 84 aa2.57□□□□□ -2
NEDD4-201ENST00000338963 MYO9BQ13459 2157 aa2.57□□□□□ -2
NEDD4-201ENST00000338963 A0A1B0GVX0 72 aa2.57□□□□□ -2
NEDD4-201ENST00000338963 EML6Q6ZMW3 1958 aa2.57□□□□□ -2
NEDD4-201ENST00000338963 IGLV5-52A0A0A0MRZ9 124 aa2.57□□□□□ -2
NEDD4-201ENST00000338963 CAMK2N1Q7Z7J9 78 aa2.57□□□□□ -2
NEDD4-201ENST00000338963 CSNK1G2-AS1Q8NCQ2 148 aa2.57□□□□□ -2
NEDD4-201ENST00000338963 ARID1BQ8NFD5 2236 aaPredicted RBP2.56□□□□□ -2
NEDD4-201ENST00000338963 DNAH10OSP0CZ25 163 aa2.56□□□□□ -2
NEDD4-201ENST00000338963 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP2.55□□□□□ -2
NEDD4-201ENST00000338963 USF3Q68DE3 2245 aa2.55□□□□□ -2
NEDD4-201ENST00000338963 A0A1W2PNU3 283 aaPredicted RBP2.55□□□□□ -2
NEDD4-201ENST00000338963 A8MUU9 505 aa2.55□□□□□ -2
NEDD4-201ENST00000338963 KRTAP4-16G5E9R7 235 aaPredicted RBP2.55□□□□□ -2
NEDD4-201ENST00000338963 DEFB123Q8N688 67 aa2.55□□□□□ -2
NEDD4-201ENST00000338963 H3BNG1 76 aa2.55□□□□□ -2
NEDD4-201ENST00000338963 GON4LQ3T8J9 2241 aa2.55□□□□□ -2
NEDD4-201ENST00000338963 SPART-AS1P0CW21 52 aa2.54□□□□□ -2
NEDD4-201ENST00000338963 DEFB136Q30KP8 78 aa2.54□□□□□ -2
NEDD4-201ENST00000338963 CASC10Q5T4H9 136 aa2.54□□□□□ -2
NEDD4-201ENST00000338963 Q5W150 140 aa2.54□□□□□ -2
NEDD4-201ENST00000338963 UNC13CQ8NB66 2214 aa2.54□□□□□ -2
NEDD4-201ENST00000338963 SSBP3-AS1Q7Z2R9 100 aa2.54□□□□□ -2
NEDD4-201ENST00000338963 FAM168BA1KXE4 195 aa2.54□□□□□ -2
NEDD4-201ENST00000338963 A0A096LPF7 62 aa2.53□□□□□ -2
NEDD4-201ENST00000338963 KRTAP26-1Q6PEX3 210 aa2.53□□□□□ -2
Retrieved 100 of 20,778 RNA–protein pairs in 113.4 ms